Report for Sequence Feature Glyma15g17060
Feature Type: gene_model
Chromosome: Gm15
Start: 13354389
stop: 13358921
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g17060
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G19760 AT
Annotation by Michelle Graham. TAIR10: eukaryotic initiation factor 4A-III | chr3:6863790-6866242 FORWARD LENGTH=408
SoyBase E_val: 0 ISS
GO:0001666 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to hypoxia
SoyBase N/A ISS
GO:0006397 GO-bp
Annotation by Michelle Graham. GO Biological Process: mRNA processing
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005654 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleoplasm
SoyBase N/A ISS
GO:0005730 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleolus
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0016607 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nuclear speck
SoyBase N/A ISS
GO:0035145 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: exon-exon junction complex
SoyBase N/A ISS
GO:0003676 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding
SoyBase N/A ISS
GO:0004386 GO-mf
Annotation by Michelle Graham. GO Molecular Function: helicase activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0008026 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity
SoyBase N/A ISS
KOG0328
KOG
Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily
JGI ISS
PTHR24031 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24031:SF143 Panther
JGI ISS
PF00270 PFAM
DEAD/DEAH box helicase
JGI ISS
PF00271 PFAM
Helicase conserved C-terminal domain
JGI ISS
UniRef100_A8DX61 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: DH n=1 Tax=Medicago sativa RepID=A8DX61_MEDSA
SoyBase E_val: 0 ISS
UniRef100_UPI0001B63AF3 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0001B63AF3 related cluster n=1 Tax=unknown RepID=UPI0001B63AF3
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g17060
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma15g17060
Paralog Evidence Comments
Glyma09g05810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g17060 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g158800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g17060
Coding sequences of Glyma15g17060
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g17060.2 sequence type=CDS gene model=Glyma15g17060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAACGACGTCGGTGGTGCCGGCGAACCGGCGTCGCGCGGCGAACCCCGCGGAGGAGATGGACTTCGAGACGACGGAGGGCGTGAAGGCCATCGCAAGCTTCGAGGAGATGGGGATCAAGGACGATCTGCTCCGCGGAATCTACCAGTACGGCTTCGAGAAGCCCTCCGCCATTCAGCAGCGGGCCGTCACGCCCATCATTCAGGGCCGTGACGTCATCGCTCAGGCCCAATCCGGAACGGGGAAAACGTCCATGATTGCTCTCACCGTTTGCCAGGTCGTCGATACCTCCGTCAGAGAGGTTCAGGCATTGATATTGTCACCAACGAGGGAACTGGCCTCACAGACTGAGAAAGTTATATTGGCTATTGGGGATTTCATTAATATACAAGCTCATGCATGCGTTGGTGGTAAAAGTGTGGGAGAAGATATAAGGAAACTTGAGTATGGAGTTCATGTGGTGTCTGGAACTCCTGGCCGAGTTTGTGACATGATCAAAAGGAGAACATTGCGCACGAGAGCTATCAAGATGCTAGTTCTTGATGAATCTGATGAAATGTTGAGCAGAGGGTTTAAAGATCAAATTTATGATGTGTATAGATATCTCCCACCCGACCTTCAGGTTTGCTTGATTTCTGCTACCCTTCCTCATGAAATACTGGAGATGACAAACAAATTCATGACAGATCCAGTAAGGATCCTTGTAAAACGTGATGAATTGACATTGGAGGGCATCAAACAATTTTTTGTTGCCGTTGAAAGGGAGGAATGGAAGTTTGATACCCTGTGTGATCTTTATGATACCCTCACTATCACTCAAGCTGTTATATTCTGTAACACTAAGCGAAAGGTGGACTGGTTAACTGAAAAAATGCGTAACAATAATTTCACTGTCTCATCAATGCATGGTGACATGCCTCAGAAAGAAAGAGATGCTATTATGGGAGAATTTCGTGCTGGAACAACCCGTGTACTAATAACAACTGATGTTTGGGCCCGTGGTCTTGATGTACAGCAGGTTTCTCTAGTTATCAATTATGACCTTCCAAATAATCGTGAGCTTTACATTCATCGAATTGGCCGTTCTGGACGTTTTGGAAGAAAGGGTGTTGCGATAAATTTTGTGAAGAGCGATGACATCAAGATCTTGAGAGACATTGAACAATACTACAGTACTCAGATTGATGAAATGCCAATGAATGTTGCTGATCTTATATAA
Predicted protein sequences of Glyma15g17060
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g17060.2 sequence type=predicted peptide gene model=Glyma15g17060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MATTSVVPANRRRAANPAEEMDFETTEGVKAIASFEEMGIKDDLLRGIYQYGFEKPSAIQQRAVTPIIQGRDVIAQAQSGTGKTSMIALTVCQVVDTSVREVQALILSPTRELASQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKMLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMGEFRAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI*