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Report for Sequence Feature Glyma16g34720

Feature Type:gene_model
Chromosome:Gm16
Start:37295191
stop:37299534
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma16g34720
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G38600AT Annotation by Michelle Graham. TAIR10: HAD superfamily, subfamily IIIB acid phosphatase | chr2:16145907-16146857 FORWARD LENGTH=251 SoyBaseE_val: 1.00E-94ISS
GO:0003993GO-mf Annotation by Michelle Graham. GO Molecular Function: acid phosphatase activity SoyBaseN/AISS
PTHR11726Panther 60S RIBOSOMAL PROTEIN L10 JGI ISS
PTHR11726:SF1Panther 50S RIBOSOMAL PROTEIN L10E JGI ISS
PF03767PFAM HAD superfamily, subfamily IIIB (Acid phosphatase) JGI ISS
UniRef100_I1MQP9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MQP9_SOYBN SoyBaseE_val: 3.00E-173ISS
UniRef100_Q8S8Z7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Syringolide-induced protein B15-3-5 n=1 Tax=Glycine max RepID=Q8S8Z7_SOYBN SoyBaseE_val: 2.00E-140ISS

Expression Patterns of Glyma16g34720
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g34720
ParalogEvidenceComments
Glyma03g00380 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g34720 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g220900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma16g34720
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma16g34720
>Glyma16g34720.2   sequence type=CDS   gene model=Glyma16g34720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGTTGAAGATAAAAATTGTGCAGCGAATAGTTGCGGGACTAACATATTTGTTAGCCTTATTAACCAAACTAGTATTGATGAACCAAAAGGTAAAGGTTCAGAAGAAAACCGATGATGAGTCAGACAGGTATGGTCTGAGTTGGAGGCTGGCGGTTGAAACAAACAATGCGTATCCATGGCGAACGGTCCCAGAGAAGTGCTACAACCACGTCCAGAACTACATATCTGGCGGTCAATACCACAATGACCTCGAAGTTATCGTGGAACATATCTTGTCATATGCCTCTAAGATTCCTCTTGCCGGTGATGGCATGGATGCCTGGATTTTGGATGTTGACGACACTTGCATCTCCAACATATCTTATTACAAAGGAAGAAGATTCGGGTGCGACCCATTTGACTCAGCGATATTCAAGGCATGGATTATGAAGGGAATGTGTCCCGCAAATCCTGCCGTGCAGCGATTGTTTAATGAGTTGATAGAGAGAGGATTCAAAGTGTTCTTGTTAACAGGTAGAGACGAAGCAACTCTCGGTGAAATCACCATTGGCAACTTGCGTAACGAGGGATTCATCGGCTACCAACGTCTTATTTTGAGGAGCGCTCAATACAAAGGGCAAAGTGCAGTGAGATACAAGTCTGCAATTCGGAAGGAGATAGAAGGAGAAGGGTACAGGATATGGGGAAATGTGGGAGATCAGTGGAGTGATCTTCAAGGAGAGTGTTTGGGCAAACGTACTTTCAAGCTCCCCAATCCCATGTATTTCATTTCCTGA
Predicted protein sequences of Glyma16g34720
>Glyma16g34720.2   sequence type=predicted peptide   gene model=Glyma16g34720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRLKIKIVQRIVAGLTYLLALLTKLVLMNQKVKVQKKTDDESDRYGLSWRLAVETNNAYPWRTVPEKCYNHVQNYISGGQYHNDLEVIVEHILSYASKIPLAGDGMDAWILDVDDTCISNISYYKGRRFGCDPFDSAIFKAWIMKGMCPANPAVQRLFNELIERGFKVFLLTGRDEATLGEITIGNLRNEGFIGYQRLILRSAQYKGQSAVRYKSAIRKEIEGEGYRIWGNVGDQWSDLQGECLGKRTFKLPNPMYFIS*






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