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Report for Sequence Feature Glyma17g13280

Feature Type:gene_model
Chromosome:Gm17
Start:10165899
stop:10172722
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G68710AT Annotation by Michelle Graham. TAIR10: ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | chr1:25793498-25797975 REVERSE LENGTH=1200 SoyBaseE_val: 0ISS
GO:0006812GO-bp Annotation by Michelle Graham. GO Biological Process: cation transport SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0015914GO-bp Annotation by Michelle Graham. GO Biological Process: phospholipid transport SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0000287GO-mf Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004012GO-mf Annotation by Michelle Graham. GO Molecular Function: phospholipid-translocating ATPase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0015662GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism SoyBaseN/AISS
GO:0046872GO-mf Annotation by Michelle Graham. GO Molecular Function: metal ion binding SoyBaseN/AISS
KOG0206 KOG P-type ATPase JGI ISS
PTHR24092Panther FAMILY NOT NAMED JGI ISS
PTHR24092:SF18Panther SUBFAMILY NOT NAMED JGI ISS
PF00122PFAM E1-E2 ATPase JGI ISS
PF00702PFAM haloacid dehalogenase-like hydrolase JGI ISS
UniRef100_G7JT17UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phospholipid-transporting ATPase n=1 Tax=Medicago truncatula RepID=G7JT17_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1MUI4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MUI4_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma05g07730 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g123800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma17g13280.1   sequence type=CDS   gene model=Glyma17g13280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGTGGGAGAAGGAGGAGGCACCACTTCGGCAGAATCCATGCATTCACGTGTGGTAGAGCTTCTATGAAAGAGGAGCATTCACTAATAGGAGGCCCTGGCTTCTCAAGGAAAGTCTATTGCAATGACCCTGAACGTGCCACAGCGAGTCTTCTAAACTATGGTGACAATTATGTCAGAACAACTAAGTATACATTGGCCACGTTCCTCCCCAAGTCCCTGTTTGAGCAGTTCAGGAGGGTTGCCAATTTCTACTTCCTTGTTTGTGCAGTTTTGTCTTTCTTTCCGGTGTCCCCTTACTCAGGCATCAGTAATGTTGTCCCTCTACTGGTTGTGGTTGCTGCCACAATGGTCAAAGAGTTCATTGAGGATTTTAGGAGGAAAAAACAGGATATAGAGATGAATAACAGAAAAGTTAAACTGCATCGTGGAGGTGGTGTTTTTGACTATTCTAAATGGAGGGATTTGAAAGTAGGAGATGTAGTGAGGGTGGAAAAAGATGAATTTTTTCCTGCTGATCTCATCTTACTTGCATCAAACTATGATGATGCAATTTGCTATGTTGAGACCATGAATCTTGATGGAGAGACAAATCTGAAGCTGAAACAAGCACCCGAAGCAACTTCAAAGTTGCAAGAAGACTCGAACGTTCAAAATTTCAGGGCTGTCATCAAATGTGAAGACCCAAATGCTAATCTGTACACATTTGTTGGTAGTATGGAGCTCGGGGATCAACAATACCCTCTTGCACCTCAACAGCTACTGCTTAGGGACTCTAAGCTGAGGAACACAGATTTTGTTTATGGCGTGGTAATATTTACTGGACATGATACAAAGGTTATGCAGAATGCAACAGATCCTCCATCCAAGAGAAGCAAAATTGAGAAAAGGATGGATAAGATTATCTACTGCCTCTTCTTTGTACTCATTTTGATTTCTTTCATTGGGTCCATATTCTTTGGGATTGCAACAAATGATGACCTTGAAAATGGAAGAATGAAGAGATGGTACCTTAGACCAGATGATACCGAAATTTACTATGATCCAAATGAACCAGTAGCTGCAGCAATTCTGCATTTCTTCACTGCACTTATGTTGTATAGTTACTTGATTCCAATTTCCTTATATGTATCCATTGAAATTGTAAAGGTTCTTCAAAGCGTGTTCATCAACCAAGATGTGCACATGTATTATGAGGAAACTGACAAGCCGGCACATGCTCGTACATCAAATTTGAATGAAGAACTTGGTCAAGTTGATACTATACTTTCAGATAAGACAGGAACTTTGACTTGCAATTCTATGGAATTCATCAAGTGTTCTATAGCTGGGGTTGCTTATGGACGAGGAGTTACTGAAGTTGAGAGAGCTCTATCTAGGAGACATGAATCACATCCAGGCCAAGAGTTGAAAAAGATTAGTGAATCAAAGTCATCCATTAAAGGGTTTAACTTTATGGATGAAAGGGTCATGAATGGAAATTGGATCAAAGAACCCAATGCCAATGTAATCCAGAACTTCCTACGGTTGCTGGCTGTATGCCATACTGCAATACCTGAAGTTGATGAAGAAACTGGTAAGGTTTCATATGAAGCTGAATCACCAGATGAGGCAGCTTTTGTGATTGCAGCCAGGGAACTTGGATTTGAATTTTATGAAAGGACACATACAACTATTTCACTGCGTGAATTAGACACCATATCAGGCCAGAAAATCAACAGGTCCTACAAACTTTTGAATATATTAGAGTTTACTAGTGCGAGAAAGCGGATGTCTGTAATTGTGAAAGATGAGGAGGGGAAACTATTACTACTTAGCAAAGGGGCTGACAGTGTAATGTTTGAACAAATTGCAAAGAATGGAAGGGATTTTGAAGAGAAGACAAAGCAGCACATTGCTGAATATGCTGATTCTGGTTTGAGGACCTTGATACTTGCATATCGTGAACTTAATGATGAAGAGTACAATAAATTTAATAAAGAGTTTACAGAGGCCAAGAACTTAGTAAGTGAAGACCAGGAGCAGATTGTTGAGGGGATAATACAAAATATTGAGAAGGATTTAATTCTTCTTGGTGCTACTGCAGTTGAAGACAAACTACAAGATGGGGTTCCTGAATGCATTGACAAGCTAGCTCAGGCTGGGATTAAGCTATGGGTTTTAACTGGTGATAAAATGGAGACAGCAATTAATATTGGATTTGCTTGTAGTTTACTCAGACAAGGAATGAAACAAATTATAATTAGCTCAGATACTCCAGAAACTAAATCATTGGAGAAAATGGAGGACAAGTCTGCTGCTGAAGCGGCAATTAAGTCAAGTGTTCTTCGTCAACTAAGGGAGTCAAAGGCATTGCTTTCTACAGCAGATGAAAACTATGAGGCCTTAGCCCTGATCATTGATGGGAAGTCTCTTACTTATGCACTAGAAGATGATGTAAAGGACTTGTTTCTTGAACTTGCCATTGGCTGTGCGTCTGTTATCTGCTGTCGTTCATCTCCCAAACAGAAAGCACTTGTTACAAGACTGGTGAAGATGAGAACTGGTAGTACAACACTAGCTATTGGAGACGGGGCAAATGATGTTGGAATGCTTCAAGAAGCAGACATTGGAATTGGTATCAGTGGCGTGGAAGGAATGCAGGCAGTTATGTCAAGTGATATTGCAATAGCCCAATTTCGGTTTCTAGAGCGCTTACTTCTTGTGCATGGACATTGGTGTTACAGAAGGATCTCGTCAATGATCTGCTATTTCTTTTACAAGAATATTGCCTTCGGCTTCACTCTGTTCTTCTTTGAGATGTATGCCTCATTCTCAGGGCAAGCTGCATACAATGATTGGTTCATGTCACTATACAATGTATTCTTCACTTCACTTCCTGTAATTGCATTAGGAGTTTTTGATCAGGACGTATCTTCTAAATTATGTCTCAAGTTTCCATTATTATATCAAGAAGGCACCCAAAACATCCTATTTAGCTGGAAACGAATCATCGGTTGGGCATTGAATGGAGTTGTGACTTCTGCCATTGTATTCTTCTTTTGCATCCGTAGTATGGAATACCAGGCATTCCGTAAAGGCGGTGAAGTCATGGGGCTGGAAGTTCTTGGTGCCACCATGTACACCTGTGTTGTGTGGGTGGTGAATTGCCAAATGGCATTATCTATCAGTTACTTCACTTACATACAACATATATTCATCTGGGGAAGCATTCTATTCTGGTATATATTCCTCCTGGCATATGGAGCAATAGACCCTTCCTTCTCAACCACAGCCTATAAGGTCTTCATTGAAGCTCTTGCACCAGCCCCATCTTTCTGGATCGTAACTTTCCTCATTCTTATTGCTTCCCTCCTTCCATATTTCGTCTATGCTTCCATCCAATTGCGTTTCTTCCCTATGTATCATCAAATGATTCAGTGGATGAGAAACGACAGGCAAACAAGTGATCCAGAATACTGTAATGTGGTAAGGCAGCGATCGATAAGACACACAACAGTTGGATTCACTGCTCGTTTGGAAGCATCCAAACGTTTTGAAGCATCCAGAAGAGTTGAAGCATCCAACCCTTTTGAAGCATCCAATCATTTTGATGCATCCAAAAGACTTGAAGCATCCAAACGTTCTGAAGGGAAGTTTGAGGATAGATAA

>Glyma17g13280.1   sequence type=predicted peptide   gene model=Glyma17g13280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGGRRRRHHFGRIHAFTCGRASMKEEHSLIGGPGFSRKVYCNDPERATASLLNYGDNYVRTTKYTLATFLPKSLFEQFRRVANFYFLVCAVLSFFPVSPYSGISNVVPLLVVVAATMVKEFIEDFRRKKQDIEMNNRKVKLHRGGGVFDYSKWRDLKVGDVVRVEKDEFFPADLILLASNYDDAICYVETMNLDGETNLKLKQAPEATSKLQEDSNVQNFRAVIKCEDPNANLYTFVGSMELGDQQYPLAPQQLLLRDSKLRNTDFVYGVVIFTGHDTKVMQNATDPPSKRSKIEKRMDKIIYCLFFVLILISFIGSIFFGIATNDDLENGRMKRWYLRPDDTEIYYDPNEPVAAAILHFFTALMLYSYLIPISLYVSIEIVKVLQSVFINQDVHMYYEETDKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGVAYGRGVTEVERALSRRHESHPGQELKKISESKSSIKGFNFMDERVMNGNWIKEPNANVIQNFLRLLAVCHTAIPEVDEETGKVSYEAESPDEAAFVIAARELGFEFYERTHTTISLRELDTISGQKINRSYKLLNILEFTSARKRMSVIVKDEEGKLLLLSKGADSVMFEQIAKNGRDFEEKTKQHIAEYADSGLRTLILAYRELNDEEYNKFNKEFTEAKNLVSEDQEQIVEGIIQNIEKDLILLGATAVEDKLQDGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQGMKQIIISSDTPETKSLEKMEDKSAAEAAIKSSVLRQLRESKALLSTADENYEALALIIDGKSLTYALEDDVKDLFLELAIGCASVICCRSSPKQKALVTRLVKMRTGSTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRFLERLLLVHGHWCYRRISSMICYFFYKNIAFGFTLFFFEMYASFSGQAAYNDWFMSLYNVFFTSLPVIALGVFDQDVSSKLCLKFPLLYQEGTQNILFSWKRIIGWALNGVVTSAIVFFFCIRSMEYQAFRKGGEVMGLEVLGATMYTCVVWVVNCQMALSISYFTYIQHIFIWGSILFWYIFLLAYGAIDPSFSTTAYKVFIEALAPAPSFWIVTFLILIASLLPYFVYASIQLRFFPMYHQMIQWMRNDRQTSDPEYCNVVRQRSIRHTTVGFTARLEASKRFEASRRVEASNPFEASNHFDASKRLEASKRSEGKFEDR*







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