Report for Sequence Feature Glyma17g14530
Feature Type: gene_model
Chromosome: Gm17
Start: 11275929
stop: 11279878
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g14530
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G12420 AT
Annotation by Michelle Graham. TAIR10: ACT domain repeat 8 | chr1:4226673-4228917 REVERSE LENGTH=441
SoyBase E_val: 0 ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0009737 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus
SoyBase N/A ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
GO:0016597 GO-mf
Annotation by Michelle Graham. GO Molecular Function: amino acid binding
SoyBase N/A ISS
PTHR13734 Panther
TRNA-NUCLEOTIDYLTRANSFERASE 1
JGI ISS
PTHR13734:SF23 Panther
ACR3 (ACT DOMAIN REPEAT 3)
JGI ISS
PF01842 PFAM
ACT domain
JGI ISS
UniRef100_B9RBU8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Amino acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RBU8_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1MUV8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MUV8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g14530
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma17g14530
Paralog Evidence Comments
Glyma05g04050 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g14530 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g136300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g14530
Coding sequences of Glyma17g14530
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g14530.1 sequence type=CDS gene model=Glyma17g14530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATGGAGTGGCCAGCATGTACCGATGAGTACGAGAAACTCGTAATTCGCATGAGCACCCCCAGGGTTGTCATAGACAATGCCGTGTGCTCCACTGCGACAATAGTCAAGGTTGATAGCGCCAGAAAGCATGGGATCCTTATTGATGCCGTACAAGTTCTCTCTGATCTTAACCTTTCAATTAAGAAGGCTTACATTTCTTCTGATGGCAGGTGGTTCATGGATGTTTTCCATGTCACGGATCAAAACGGAAACAAGCTCACAGATGAGAGCGTCTTAAGCTATATTGAACAGTCACTTGGTAGCATTCACAATGGAAAAACCAGTCACTCAAACGGTCTCACGATCCTTGAATTAACCGGCACTGACCGCGTTGGTCTTCTTTCGGAGGTGTTTGCTGTTCTGGCTGAACAGCAATGTGATGTGGTCGATGCTAAGGTTTGGACTCACAATGGCCGGATTGCCTCCTTAATCTACGTGAAAGACTCCAATTCTGAGACTCCTATTGAGGACTCTCAGAGAATCAGTACCATTGAAGCACGTTTGAGAAATGTTTTAAAGGGTGACAACGATATTAGGAATGCAAAAACTTCCGTCACTAATGCTGTTTTGCATGCCGAAAGAAGGTTGCACCAAATGATGTACACTGACCGTGATTACCAGAGGAATCCCATTTTCAAATTCTCTTCTGATACCCCAATTGTCACCGTCCAAAATTGGGCAGAAAGGGGTTATTCTGTCGTCAATGTTCAGTGCAAAGATCGAGTTAAGCTTTTGTTTGATGTCGTGTGCAATTTGACAGAAATGGAATATGTTGTGTTCCATGCCACTATCAAGACAACAATCGACCAAGCGTATCTGGAGTTTTATATAAGACACAAGGATGGCACCCCAATTAGTTCAGAACCAGAGCGACACCGTGTGATTCAATGCTTGCAAGCTGCAGTGGAGAGAAGGGCATTTGAGGGTGTTAGGCTAGAGTTATGCACCGAAGACAGACAAGGACTTCTTGCAGAAGTGATGAGAACTTTCCGAGAAAATGGGCTGAATGTGACAAGGGCAGAGATATCTACCATAGGGGACATGGCATCAAATGTTTTCTATGTAACAGATGCGATAGGATACCCTGCTGATCCAAAAATCGTGGAATCTGTAAGGCAGAAAGTAGGGTTAAGCAATTTAAAAGTCAAGGAGTTGCCATTGGTATGCCATGAGAAGGCAGAAAGGGAGGATCAACCAGTTGGGGTTGGTGGGGCAGTGTTACTGTGTCTGGGGAGCCTCGTGAGAAGGAATCTTTACAATTTGGGTTTGATAAAATCTTGTTCTTAA
Predicted protein sequences of Glyma17g14530
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g14530.1 sequence type=predicted peptide gene model=Glyma17g14530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MMEWPACTDEYEKLVIRMSTPRVVIDNAVCSTATIVKVDSARKHGILIDAVQVLSDLNLSIKKAYISSDGRWFMDVFHVTDQNGNKLTDESVLSYIEQSLGSIHNGKTSHSNGLTILELTGTDRVGLLSEVFAVLAEQQCDVVDAKVWTHNGRIASLIYVKDSNSETPIEDSQRISTIEARLRNVLKGDNDIRNAKTSVTNAVLHAERRLHQMMYTDRDYQRNPIFKFSSDTPIVTVQNWAERGYSVVNVQCKDRVKLLFDVVCNLTEMEYVVFHATIKTTIDQAYLEFYIRHKDGTPISSEPERHRVIQCLQAAVERRAFEGVRLELCTEDRQGLLAEVMRTFRENGLNVTRAEISTIGDMASNVFYVTDAIGYPADPKIVESVRQKVGLSNLKVKELPLVCHEKAEREDQPVGVGGAVLLCLGSLVRRNLYNLGLIKSCS*