Report for Sequence Feature Glyma18g01510
Feature Type: gene_model
Chromosome: Gm18
Start: 817957
stop: 821165
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g01510
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G67730 AT
Annotation by Michelle Graham. TAIR10: beta-ketoacyl reductase 1 | chr1:25391676-25393365 FORWARD LENGTH=318
SoyBase E_val: 9.00E-164 ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0009790 GO-bp
Annotation by Michelle Graham. GO Biological Process: embryo development
SoyBase N/A ISS
GO:0016126 GO-bp
Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process
SoyBase N/A ISS
GO:0042335 GO-bp
Annotation by Michelle Graham. GO Biological Process: cuticle development
SoyBase N/A ISS
GO:0042761 GO-bp
Annotation by Michelle Graham. GO Biological Process: very long-chain fatty acid biosynthetic process
SoyBase N/A ISS
GO:0046520 GO-bp
Annotation by Michelle Graham. GO Biological Process: sphingoid biosynthetic process
SoyBase N/A ISS
GO:0005783 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0016491 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity
SoyBase N/A ISS
GO:0018454 GO-mf
Annotation by Michelle Graham. GO Molecular Function: acetoacetyl-CoA reductase activity
SoyBase N/A ISS
GO:0045703 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ketoreductase activity
SoyBase N/A ISS
KOG1014
KOG
17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3
JGI ISS
PTHR24316 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24316:SF38 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00106 PFAM
short chain dehydrogenase
JGI ISS
UniRef100_C6TME1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TME1_SOYBN
SoyBase E_val: 0 ISS
UniRef100_G7J2K6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Short-chain dehydrogenase/reductase n=1 Tax=Medicago truncatula RepID=G7J2K6_MEDTR
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g01510
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma18g01510
Paralog Evidence Comments
Glyma11g37560 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g01510 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g011600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g01510
Coding sequences of Glyma18g01510
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g01510.1 sequence type=CDS gene model=Glyma18g01510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAATGCTGCATAATCGCCAGGCTCAAGACCCAACCTTTATGGTTCGCGCTGCTCTTCGTTGTCGGATTGTTAACGATTCTCAAATTGGCTTTCGTTGTTTTCAGATGGGTCTACGTCAATTTCCTCCGACCACCGAAGAATCTCAAAAAGTACGGATCTTGGGCAGTGGTTACTGGACCCACTGACGGCATTGGAAAGAGCTTCGCTTTCGAGCTCGCTCGCAAGGGCCTGAACCTCGTCCTTGTCGGAAGGAACCCCGACAAGCTCAAAGACGTGTCGGATTCGATCGCGGCGAAGTTCAGAAGAACCGAGGTTAAGACCGTCGTGGTTGACTTCTCCGGGGATCTGGACGAGGGCGTGAAGAAGATTAGCGAAGCGATTGAAGGGTTGGAAGTTGGAGTGCTCGTTAACAATGTGGGAGTTTCGTATCCTTACGCGAGGTTCTTCCACGAAGTGGACGAGGGGCTTCTCAACAACCTTATTAAGGTTAACGTTGTTGGAACCACTAAGGTCACGCAAGCTGTTCTGCCAGGGATGCTCAGGAGAAAGAAGGGGGCGATTGTTAACATTGGTTCTGGAGCTGCTATTGTTATTCCTTCTGATCCTCTTTATGCTGTTTATGCCGCCACCAAAGCGTACATCGACCAGTTTTCGAGATGTCTCTATGTTGAATACAAGAAGAGTGGGATTGACGTTCAGTGTCAGATTCCATTATATGTGGCAACCAAGATGGCATCAATCAGGAAATCTTCATTCTTTGTTCCATCAACAGATGGCTATGCCAAAGCAGGTGTGAAATGGATAGGCTATGAGCCTCGTTGCACACCATACTGGCCGCATACTCTTCTTTGGGCTGTGGCATTCTCATTGCCCGAGTTTGTTGTTGATGCTTGGCGCCTGTGGTTTTGCTTGGGTATTCGAAAGAGGGGACAGCGCAAAGAGTCCATGAAGAAGGAATAA
Predicted protein sequences of Glyma18g01510
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g01510.1 sequence type=predicted peptide gene model=Glyma18g01510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MECCIIARLKTQPLWFALLFVVGLLTILKLAFVVFRWVYVNFLRPPKNLKKYGSWAVVTGPTDGIGKSFAFELARKGLNLVLVGRNPDKLKDVSDSIAAKFRRTEVKTVVVDFSGDLDEGVKKISEAIEGLEVGVLVNNVGVSYPYARFFHEVDEGLLNNLIKVNVVGTTKVTQAVLPGMLRRKKGAIVNIGSGAAIVIPSDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQIPLYVATKMASIRKSSFFVPSTDGYAKAGVKWIGYEPRCTPYWPHTLLWAVAFSLPEFVVDAWRLWFCLGIRKRGQRKESMKKE*