Report for Sequence Feature Glyma18g04540
Feature Type: gene_model
Chromosome: Gm18
Start: 3317468
stop: 3321851
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g04540
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G37710 AT
Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr5:14979159-14981400 FORWARD LENGTH=436
SoyBase E_val: 0 ISS
GO:0006629 GO-bp
Annotation by Michelle Graham. GO Biological Process: lipid metabolic process
SoyBase N/A ISS
GO:0016042 GO-bp
Annotation by Michelle Graham. GO Biological Process: lipid catabolic process
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0004806 GO-mf
Annotation by Michelle Graham. GO Molecular Function: triglyceride lipase activity
SoyBase N/A ISS
GO:0005516 GO-mf
Annotation by Michelle Graham. GO Molecular Function: calmodulin binding
SoyBase N/A ISS
KOG2088
KOG
Predicted lipase/calmodulin-binding heat-shock protein
JGI ISS
PTHR21493 Panther
CGI-141-RELATED/LIPASE CONTAINING PROTEIN
JGI ISS
PTHR21493:SF1 Panther
CALMODULIN-BINDING HEAT-SHOCK PROTEIN
JGI ISS
PF01764 PFAM
Lipase (class 3)
JGI ISS
PF03893 PFAM
Lipase 3 N-terminal region
JGI ISS
UniRef100_Q41251 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin-binding heat-shock protein n=1 Tax=Nicotiana tabacum RepID=Q41251_TOBAC
SoyBase E_val: 0 ISS
UniRef100_UPI000233EFC9 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233EFC9 related cluster n=1 Tax=unknown RepID=UPI000233EFC9
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g04540
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma18g04540
Paralog Evidence Comments
Glyma11g33660 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g04540 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g040500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g04540
Coding sequences of Glyma18g04540
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g04540.1 sequence type=CDS gene model=Glyma18g04540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCCGCCTCATGCGGGGTGGTGGAGTGCGTTTTCGTTCTGGGCTGCGCGCGGTGGCTGTGGAAGCGCTGCACCTACGTGGGCAGCTACGACAGCGCCACTTGGCCCGCCGCCACCGCCGACGAGTTCGACCGGGTGCCGCGCGTCTGCCGCCTCATCCTCGCCAACTACGAGCCCGATCTCCGCACCCCGCAGTACCAAAAACCCACCTCCGCCACCGGCCACCGCCTGAACCCGGACTGCGTCATCAAGCGCGTGACCTACGAGGACACGCTGGGCCACGCGCCTCCGTACATAATCTACCTCGACCACGAGAACAAGGAGATCGTGCTCGCCGTGCGTGGGCTGAACCTCGCCAAAGAGAGCGACTACAAGGTTCTCCTCGATAACCGGTTAGGGCAACAAATGTTTGATGGTGGGTATGTTCATCATGGGTTGTTGAAATCGGCAGTGTGGTTGTTGAACCGTGAATCGGAGACGCTGAAGCGGTTGTGGGTGGAGAATGGTTCGGAGTATGAGATGGTTTTCGCGGGGCACTCGTTGGGTTCTGGGGTGGTGTCGCTGTTGACCATTTTGGTTGTGAATCATAGGGACCGTTTGGGTGGGATTCCCAAGGAGAAGATTCGGTGCTATGCGCTTGCTCCAGCTAGGTGTATGTCCCTGAATTTGGCTGTCAAGTATGCCAATGTCATTCATTCTATTGTTTTGCAGGATGATTTCTTGCCAAGAACGGCCACTCCATTGGAAGATATATTCAAATCAATATTCTGCTTGCCCTGCTTGTTGTTCTTGGTTTGCCTGAGAGACACCTTCATACCTGAGGGTAGAAAGCTTAGAGATCCAAGGAGACTTTATGCACCTGGAAGAATGTACCATATTGTGGAGAGAAAATTCTGCAGATGTGGGAGATTTCCTCCTGAAGTGAGGACTGCTATTCCTGTTGATGGAAGATTTGAGCATATTGTCTTGTCCTGTAATGCAACATCGGATCATGGAATTATTTGGATTGAAAGGGAGGCTGAGAAAGCCTTACAATTAATGAAGGCTCAGAGCTCTGAAACTGTGACAGACCCTCCAACAGTACAAAAGTTTCAGAGGTTGAAGACCATAGAGAAAGAACATAGAGATGCTTTGGAAAGAGCTGTTAGCCTGAATGTACCTCATGCAGTGGACACTGCTGAGAAAGAAACATCTGAGAACAATGAAGGTGACGACGATGCATCCGCCAGTGCAAACAATAACGTCTCAAGTAACCAATCAAAATCTAGTGGTGGAAGGTCGAACTGGGATGAGGTAGTTGAAAAACTTCTAAAGAAGAAGAGTGAAACGGGAGAACAAAACCTGGAAAGGGATACGAATGTCACACAATAA
Predicted protein sequences of Glyma18g04540
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g04540.1 sequence type=predicted peptide gene model=Glyma18g04540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSASCGVVECVFVLGCARWLWKRCTYVGSYDSATWPAATADEFDRVPRVCRLILANYEPDLRTPQYQKPTSATGHRLNPDCVIKRVTYEDTLGHAPPYIIYLDHENKEIVLAVRGLNLAKESDYKVLLDNRLGQQMFDGGYVHHGLLKSAVWLLNRESETLKRLWVENGSEYEMVFAGHSLGSGVVSLLTILVVNHRDRLGGIPKEKIRCYALAPARCMSLNLAVKYANVIHSIVLQDDFLPRTATPLEDIFKSIFCLPCLLFLVCLRDTFIPEGRKLRDPRRLYAPGRMYHIVERKFCRCGRFPPEVRTAIPVDGRFEHIVLSCNATSDHGIIWIEREAEKALQLMKAQSSETVTDPPTVQKFQRLKTIEKEHRDALERAVSLNVPHAVDTAEKETSENNEGDDDASASANNNVSSNQSKSSGGRSNWDEVVEKLLKKKSETGEQNLERDTNVTQ*