Glyma18g16160 - SoyBase

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Report for Sequence Feature Glyma18g16160

Feature Type:	gene_model
Chromosome:	Gm18
Start:	16490332
stop:	16496475
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g16160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G02760	AT	Annotation by Michelle Graham. TAIR10: ubiquiting-conjugating enzyme 2 \| chr2:774271-775149 FORWARD LENGTH=152	SoyBase	E_val: 2.00E-78	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0009650	GO-bp	Annotation by Michelle Graham. GO Biological Process: UV protection	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0033523	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H2B ubiquitination	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0016881	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity	SoyBase	N/A	ISS
KOG0419	KOG	Ubiquitin-protein ligase	JGI		ISS
PTHR24067	Panther	UBIQUITIN-CONJUGATING ENZYME E2	JGI		ISS
PF00179	PFAM	Ubiquitin-conjugating enzyme	JGI		ISS
UniRef100_A9PD36	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Histone ubiquitination proteins group n=1 Tax=Populus trichocarpa RepID=A9PD36_POPTR	SoyBase	E_val: 1.00E-76	ISS
UniRef100_I1N181	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N181_SOYBN	SoyBase	E_val: 1.00E-86	ISS

Expression Patterns of Glyma18g16160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g16160

Paralog	Evidence	Comments
Glyma08g40860	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g16160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g124600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g16160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g16160

Limit To All Plant Sequences

>Glyma18g16160.4   sequence type=transcript   gene model=Glyma18g16160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTCTATAAAATCAAAATAATTGAAACCAAAGATTCTCTCTCTCTCTCTCATGATCCCTACGCCATGGAACCATTTCCCTCATAAAATTCTCTCTTCCTTTTTGGGTTCTCCTCAATCCATTCCAAGCTTCAATCTTTTCTCTCTTCTGCCCTCTGCACCTCCCCTCACACCCTTCCTCATTCGCAGAATCCCTTGTTTTGTGGGTGGCTTCCTACTTTGTGGTGGAATTGGAGAAATCGATCTGGGATATAGGAGGTGAAGATGTCGACCCCGGCAAGGAAGAGACTGATGAGGGATTTTAAAAGATTGCAACAAGATCCTCCTGCTGGCATCAGTGGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCTGTTATCTTTGGACCAGATGACACCCCTTGGGATGGAGGTACGTTTAAGTTGACACTTCAGTTTACAGAGGATTATCCTAATAAACCACCTACTGTGCGTTTTGTTTCTCGAATGTTTCATCCTAACATTTATGCGGATGGCAGTATATGCTTGGACATTTTACAGAATCAGTGGAGCCCTATTTATGACGTAGCTGCAATTCTTACCTCAATCCAGTCATTGCTGTGTGATCCAAACCCAAATTCACCAGCAAATTCTGAAGCTGCTCGGATGTTCAGTGAAAACAAGCGTGAATACAACAGAAGAGTACGTGAGATTGTTGAGCAGAGTTGGACTGCTGACTAATCATCATAGATAAGATAGGGCTTCTGTGACAATCAAAAGGTTGTCAAAAGGATATATGATTGAATAACCAGCAGACTTCAAAAAGAACCATTATGATTTTCTAGTCCTTGACACTGTGCTTGCTCAAACTCTATGAGTTAATGTTCCACCTTATTTTCTCCATGTTGTGTGGTTCATTTTGTGTCTTTGGTGACAACTTTATCATTATAACATAGGATGGCGTAGCTAACCGGCGATATTTTTAGCAATAAACAAAATGGTCCTTACCCTTGGAAAGGCACAATGGGACTCAAGGGAGCATGTGTACGTGGCACTAAAAGTAGGATGCCAACTTGATTGAATAGAGTGAGGTATTATTTGAGGACCACTATTTTATAAGGATGAATTTCTATCATCATTAGTTAAGTGTATTTAATTTTATTAGAAAATAGTTAATAAT

>Glyma18g16160.5   sequence type=transcript   gene model=Glyma18g16160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGAGTTCGTAGCAAGTTGCCAAGAAAAGCAGACATCATCACAGAGAGAGAGAGAGTATTTAGGATTGGGACGACTCAGCTGACTCGACCATTCTATAAAATCAAAATAATTGAAACCAAAGATTCTCTCTCTCTCTCTCATGATCCCTACGCCATGGAACCATTTCCCTCATAAAATTCTCTCTTCCTTTTTGGGTTCTCCTCAATCCATTCCAAGCTTCAATCTTTTCTCTCTTCTGCCCTCTGCACCTCCCCTCACACCCTTCCTCATTCGCAGATATAGGAGGTGAAGATGTCGACCCCGGCAAGGAAGAGACTGATGAGGGATTTTAAAAGATTGCAACAAGATCCTCCTGCTGGCATCAGTGGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCTGTTATCTTTGGACCAGATGACACCCCTTGGGATGGAGGTACGTTTAAGTTGACACTTCAGTTTACAGAGGATTATCCTAATAAACCACCTACTGTGCGTTTTGTTTCTCGAATGTTTCATCCTAACATTTATGCGGATGGCAGTATATGCTTGGACATTTTACAGAATCAGTGGAGCCCTATTTATGACGTAGCTGCAATTCTTACCTCAATCCAGTCATTGCTGTGTGATCCAAACCCAAATTCACCAGCAAATTCTGAAGCTGCTCGGATGTTCAGTGAAAACAAGCGTGAATACAACAGAAGAGTACGTGAGATTGTTGAGCAGAGTTGGACTGCTGACTAATCATCATAGATAAGATAGGGCTTCTGTGACAATCAAAAGGTTGTCAAAAGGATATATGATTGAATAACCAGCAGACTTCAAAAAGAACCATTATGATTTTCTAGTCCTTGACACTGTGCTTGCTCAAACTCTATGAGTTAATGTTCCACCTTATTTTCTCCATGTTGTGTGGTTCATTTTGTGTCTTTGGTGACAACTTTATCATTATAACATAGGATGGCGTAGCTAACCGGCGATATTTTTAGCAATAAACAAAATGGTCCTTACCCTTGGAAAGGCACAATGGGACTCAAGGGAGCATGTGTACGTGGCACTAAAAGTAGGATGCCAACTTGATTGAATAGAGTGAGGTATTATTTGAGGACCACTATTTTATAAGGATGAATTTCTATCATCATTAGTTAAGTGTATTTAATTTTATTAGAAAATAGTTAATAAT

Coding sequences of Glyma18g16160

Limit To All Plant Sequences

>Glyma18g16160.3   sequence type=CDS   gene model=Glyma18g16160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGACCCCGGCAAGGAAGAGACTGATGAGGGATTTTAAAAGATTGCAACAAGATCCTCCTGCTGGCATCAGTGGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCTGTTATCTTTGGACCAGATGACACCCCTTGGGATGGAGGTACGTTTAAGTTGACACTTCAGTTTACAGAGGATTATCCTAATAAACCACCTACTGTGCGTTTTGTTTCTCGAATGTTTCATCCTAACATTTATGCGGATGGCAGTATATGCTTGGACATTTTACAGAATCAGTGGAGCCCTATTTATGACGTAGCTGCAATTCTTACCTCAATCCAGTCATTTGAATTCAGTCTATGCTATGAATCAGGGAAACCTAAACTTTGA

>Glyma18g16160.4   sequence type=CDS   gene model=Glyma18g16160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGACCCCGGCAAGGAAGAGACTGATGAGGGATTTTAAAAGATTGCAACAAGATCCTCCTGCTGGCATCAGTGGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCTGTTATCTTTGGACCAGATGACACCCCTTGGGATGGAGGTACGTTTAAGTTGACACTTCAGTTTACAGAGGATTATCCTAATAAACCACCTACTGTGCGTTTTGTTTCTCGAATGTTTCATCCTAACATTTATGCGGATGGCAGTATATGCTTGGACATTTTACAGAATCAGTGGAGCCCTATTTATGACGTAGCTGCAATTCTTACCTCAATCCAGTCATTGCTGTGTGATCCAAACCCAAATTCACCAGCAAATTCTGAAGCTGCTCGGATGTTCAGTGAAAACAAGCGTGAATACAACAGAAGAGTACGTGAGATTGTTGAGCAGAGTTGGACTGCTGACTAA

>Glyma18g16160.5   sequence type=CDS   gene model=Glyma18g16160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGACCCCGGCAAGGAAGAGACTGATGAGGGATTTTAAAAGATTGCAACAAGATCCTCCTGCTGGCATCAGTGGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCTGTTATCTTTGGACCAGATGACACCCCTTGGGATGGAGGTACGTTTAAGTTGACACTTCAGTTTACAGAGGATTATCCTAATAAACCACCTACTGTGCGTTTTGTTTCTCGAATGTTTCATCCTAACATTTATGCGGATGGCAGTATATGCTTGGACATTTTACAGAATCAGTGGAGCCCTATTTATGACGTAGCTGCAATTCTTACCTCAATCCAGTCATTGCTGTGTGATCCAAACCCAAATTCACCAGCAAATTCTGAAGCTGCTCGGATGTTCAGTGAAAACAAGCGTGAATACAACAGAAGAGTACGTGAGATTGTTGAGCAGAGTTGGACTGCTGACTAA

Predicted protein sequences of Glyma18g16160

Limit To All Plant Sequences

>Glyma18g16160.3   sequence type=predicted peptide   gene model=Glyma18g16160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSFEFSLCYESGKPKL*

>Glyma18g16160.4   sequence type=predicted peptide   gene model=Glyma18g16160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD*

>Glyma18g16160.5   sequence type=predicted peptide   gene model=Glyma18g16160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD*

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