Report for Sequence Feature Glyma18g39570
Feature Type: gene_model
Chromosome: Gm18
Start: 47615652
stop: 47626020
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g39570
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G09410 AT
Annotation by Michelle Graham. TAIR10: Pectinacetylesterase family protein | chr3:2898243-2900984 REVERSE LENGTH=427
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
KOG4287
KOG
Pectin acetylesterase and similar proteins
JGI ISS
PTHR21562 Panther
NOTUM-RELATED
JGI ISS
PTHR21562:SF1 Panther
PECTIN ACETYLESTERASE
JGI ISS
PF03283 PFAM
Pectinacetylesterase
JGI ISS
UniRef100_G7L4F5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Notum-like protein n=1 Tax=Medicago truncatula RepID=G7L4F5_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233E10A UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233E10A related cluster n=1 Tax=unknown RepID=UPI000233E10A
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g39570
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma18g39570
Paralog Evidence Comments
Glyma07g15737 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g39570 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g179800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g39570
Transcripts of Glyma18g39570
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g39570.2 sequence type=transcript gene model=Glyma18g39570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CTCAAATCAAACTAGAATAGGAAACAAAATAATCTAGCATTAGATTTAGAGCACATTGAGCACGTTGGACAACAAATAAAACTAAACATCTTCATTGCGTTGACTCCAACTACTTGAACTCACTCCTGCAGTGTCCTTCTTCAATCCCATTCATTCATTCTCCCCCGACAACAACGCCATGCCTTCATGGTCGTCTTCTTCTTCCGCTCTAACCGCTCCCAATTTGCGTCTTCGCACTCTCAGAATTTGGTCCTCCAAGGACTATGCAATCGCCGCATTCATTTTCCTCATTCTCTTCTCTCTCCTTCTCTTCTCCCACTTGGATTCCCGTTACGATTCCCAGCCCCATCACTCCAAGCTCGTTCCGTTAACCCTCCTCCGCAACGCCAACCAAACGCGCGCGCTTTGCTTGGACGGGAGCGCTCCCGGTTACCATTTCCAAAGCGGGTTCGGATCCGGATCCCGCAATTGGCTGATCCACATTGAGGGAGGAGGGTGGTGCAATTCGATACCTTCTTGCTACCAGCGAAAATTCACTCATTTGGGGTCTTCCGATCATATGGAGAAGCTTATTCCTTTTTCAGGAATTTTGAGCTCTGACCCTGCTCAGAACCCTGATTTCTTTAACTGGAACAAGGTGAAGATACGTTATTGTGACGGTGCATCTTTTGCGGGTCATCCAGAGAGTGAGAGAGGAAGTGGGTTGTTCTTCAGAGGCCAGGTCATATGGGAAGCTATTATGGATGAACTCTTATCAACTGGCCTGTCTAATGCAAAGCAGGCTTTGCTTTCAGGATGCTCTGCTGGAGGGTTGGCAACTCTTATACACTGTGATAGTTTCCGACAAGTACTTCCAAAGGAAGCAACTGTCAAGTGTCTTGCTGATGCAGGCTTCTTCCTAGATGAGAAGGATATTAGTGGAAACAGTACAATGAGATCTTTCTATCATGATGTTGCCCAGCTTCAGGGTCTTGCAAAAAGTTTGCACAAAGATTGCATTGCTAAAATGGAACCATCTAAGTGTCTCTTTCCATCAGAAATTGCTAAAAACATAAAGACTCCACTGTTCCTTGTTCATCCAGCTTATGATTTCTGGCAGATACGCAATATTTTGGTGCCTCAAGGATCAGATCCTGATGGTCACTGGCAAAGGTGCAGACTGGACATTCGCAGTTGTAATGCTAATATGATTGATAAACTTGACAGTTACCGTGGCTCTTTGCTGAAGGCTGTGAATGAATTCCAACAACGAAAGGAGATTGGAATGTTTATAGATTCATGCTTCGTCCATTGCCAGACTGAGATGGAAGTGACGTGGCATTCACCCAACTCTCCTAAAATAAATGATAAGACAATTGCGGAATCTGTTGGTGATTGGTACTTTGACCGAGAAGCGGTAAAGCGCATTGACTGCTCTTCTTTTTCGTGCAACCCCACTTGCCACAACATGGATTTCACCTGAATATAAAATAAAGCTATGAGCCCCATTTTTTATTGCAACTTTTATCCCGGATCTTGGTTGCTTGAAGTTCATGAAGGAATATCCTCATTTATATCCGTTACGTGAATTTGGCTTCAATTGATTTAGAGTTAGAGAATATGCTGGGGAGTTCATCTTATTCACTTGTATGATATGGGTTCTACAGTCTATAGATTATTAAGCCATGCAGCATGTGTCCCCTTGATCAAGTGATTCAATTGTTATATAAATCAATTGTGTAATTGATTTGTTAGTTTCTTCTTAACTTTGTAATTTTTTTATGGATCCCTAATCCAGCACATTAGATTTTTGTGAATTACAAATTTATTATATTGATGCTCTATTAGCAACTCCAAAATCTCCGAATAAATGCAACCGTAATGAAAAGGGTATGTTGTGCCAGTAGTTTTCTTTCAATAAAAAATATTGGCCCCCTTTTCTTAT
Coding sequences of Glyma18g39570
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g39570.1 sequence type=CDS gene model=Glyma18g39570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGAAGCTTATTCCTTTTTCAGGAATTTTGAGCTCTGACCCTGCTCAGAACCCTGATTTCTTTAACTGGAACAAGGTGAAGATACGTTATTGTGACGGTGCATCTTTTGCGGGTCATCCAGAGAGTGAGAGAGGAAGTGGGTTGTTCTTCAGAGGCCAGGTCATATGGGAAGCTATTATGGATGAACTCTTATCAACTGGCCTGTCTAATGCAAAGCAGGCTTTGCTTTCAGGATGCTCTGCTGGAGGGTTGGCAACTCTTATACACTGTGATAGTTTCCGACAAGTACTTCCAAAGGAAGCAACTGTCAAGTGTCTTGCTGATGCAGGCTTCTTCCTAGATGAGAAGGATATTAGTGGAAACAGTACAATGAGATCTTTCTATCATGATGTTGCCCAGCTTCAGGGTCTTGCAAAAAGTTTGCACAAAGATTGCATTGCTAAAATGGAACCATCTAAGTGTCTCTTTCCATCAGAAATTGCTAAAAACATAAAGACTCCACTGTTCCTTGTTCATCCAGCTTATGATTTCTGGCAGATACGCAATATTTTGGTGCCTCAAGGATCAGATCCTGATGGTCACTGGCAAAGGTGCAGACTGGACATTCGCAGTTGTAATGCTAATATGATTGATAAACTTGACAGTTACCGTGGCTCTTTGCTGAAGGCTGTGAATGAATTCCAACAACGAAAGGAGATTGGAATGTTTATAGATTCATGCTTCGTCCATTGCCAGACTGAGATGGAAGTGACGTGGCATTCACCCAACTCTCCTAAAATAAATGATAAGACAATTGCGGAATCTGTTGGTGATTGGTACTTTGACCGAGAAGCGGTAAAGCGCATTGACTGCTCTTCTTTTTCGTGCAACCCCACTTGCCACAACATGGATTTCACCTGA
>Glyma18g39570.2 sequence type=CDS gene model=Glyma18g39570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCTTCATGGTCGTCTTCTTCTTCCGCTCTAACCGCTCCCAATTTGCGTCTTCGCACTCTCAGAATTTGGTCCTCCAAGGACTATGCAATCGCCGCATTCATTTTCCTCATTCTCTTCTCTCTCCTTCTCTTCTCCCACTTGGATTCCCGTTACGATTCCCAGCCCCATCACTCCAAGCTCGTTCCGTTAACCCTCCTCCGCAACGCCAACCAAACGCGCGCGCTTTGCTTGGACGGGAGCGCTCCCGGTTACCATTTCCAAAGCGGGTTCGGATCCGGATCCCGCAATTGGCTGATCCACATTGAGGGAGGAGGGTGGTGCAATTCGATACCTTCTTGCTACCAGCGAAAATTCACTCATTTGGGGTCTTCCGATCATATGGAGAAGCTTATTCCTTTTTCAGGAATTTTGAGCTCTGACCCTGCTCAGAACCCTGATTTCTTTAACTGGAACAAGGTGAAGATACGTTATTGTGACGGTGCATCTTTTGCGGGTCATCCAGAGAGTGAGAGAGGAAGTGGGTTGTTCTTCAGAGGCCAGGTCATATGGGAAGCTATTATGGATGAACTCTTATCAACTGGCCTGTCTAATGCAAAGCAGGCTTTGCTTTCAGGATGCTCTGCTGGAGGGTTGGCAACTCTTATACACTGTGATAGTTTCCGACAAGTACTTCCAAAGGAAGCAACTGTCAAGTGTCTTGCTGATGCAGGCTTCTTCCTAGATGAGAAGGATATTAGTGGAAACAGTACAATGAGATCTTTCTATCATGATGTTGCCCAGCTTCAGGGTCTTGCAAAAAGTTTGCACAAAGATTGCATTGCTAAAATGGAACCATCTAAGTGTCTCTTTCCATCAGAAATTGCTAAAAACATAAAGACTCCACTGTTCCTTGTTCATCCAGCTTATGATTTCTGGCAGATACGCAATATTTTGGTGCCTCAAGGATCAGATCCTGATGGTCACTGGCAAAGGTGCAGACTGGACATTCGCAGTTGTAATGCTAATATGATTGATAAACTTGACAGTTACCGTGGCTCTTTGCTGAAGGCTGTGAATGAATTCCAACAACGAAAGGAGATTGGAATGTTTATAGATTCATGCTTCGTCCATTGCCAGACTGAGATGGAAGTGACGTGGCATTCACCCAACTCTCCTAAAATAAATGATAAGACAATTGCGGAATCTGTTGGTGATTGGTACTTTGACCGAGAAGCGGTAAAGCGCATTGACTGCTCTTCTTTTTCGTGCAACCCCACTTGCCACAACATGGATTTCACCTGA
Predicted protein sequences of Glyma18g39570
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g39570.1 sequence type=predicted peptide gene model=Glyma18g39570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEKLIPFSGILSSDPAQNPDFFNWNKVKIRYCDGASFAGHPESERGSGLFFRGQVIWEAIMDELLSTGLSNAKQALLSGCSAGGLATLIHCDSFRQVLPKEATVKCLADAGFFLDEKDISGNSTMRSFYHDVAQLQGLAKSLHKDCIAKMEPSKCLFPSEIAKNIKTPLFLVHPAYDFWQIRNILVPQGSDPDGHWQRCRLDIRSCNANMIDKLDSYRGSLLKAVNEFQQRKEIGMFIDSCFVHCQTEMEVTWHSPNSPKINDKTIAESVGDWYFDREAVKRIDCSSFSCNPTCHNMDFT*
>Glyma18g39570.2 sequence type=predicted peptide gene model=Glyma18g39570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPSWSSSSSALTAPNLRLRTLRIWSSKDYAIAAFIFLILFSLLLFSHLDSRYDSQPHHSKLVPLTLLRNANQTRALCLDGSAPGYHFQSGFGSGSRNWLIHIEGGGWCNSIPSCYQRKFTHLGSSDHMEKLIPFSGILSSDPAQNPDFFNWNKVKIRYCDGASFAGHPESERGSGLFFRGQVIWEAIMDELLSTGLSNAKQALLSGCSAGGLATLIHCDSFRQVLPKEATVKCLADAGFFLDEKDISGNSTMRSFYHDVAQLQGLAKSLHKDCIAKMEPSKCLFPSEIAKNIKTPLFLVHPAYDFWQIRNILVPQGSDPDGHWQRCRLDIRSCNANMIDKLDSYRGSLLKAVNEFQQRKEIGMFIDSCFVHCQTEMEVTWHSPNSPKINDKTIAESVGDWYFDREAVKRIDCSSFSCNPTCHNMDFT*