Report for Sequence Feature Glyma18g42530
Feature Type: gene_model
Chromosome: Gm18
Start: 51658008
stop: 51661158
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g42530
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G38090 AT
Annotation by Michelle Graham. TAIR10: Duplicated homeodomain-like superfamily protein | chr2:15945278-15946775 FORWARD LENGTH=298
SoyBase E_val: 5.00E-115 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
KOG0724
KOG
Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains
JGI ISS
PTHR25040 Panther
FAMILY NOT NAMED
JGI ISS
PTHR25040:SF29 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00249 PFAM
Myb-like DNA-binding domain
JGI ISS
UniRef100_D5FFG7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: MYB transcription factor MYB33 n=1 Tax=Medicago truncatula RepID=D5FFG7_MEDTR
SoyBase E_val: 3.00E-161 ISS
UniRef100_I1N2U6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N2U6_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g42530
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma18g42530
Paralog Evidence Comments
Glyma07g17660 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g42530 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g197500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g42530
Coding sequences of Glyma18g42530
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g42530.1 sequence type=CDS gene model=Glyma18g42530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAATAGGGGAATTGAAGTGCTCTCTCCAGCCTCCTATCTCCAAAACTCCAATTGGTTGTTCCAGGAAAGCAAGGAAGCAAGATGGACTGCAGAAGAGAACAAACTGTTTGAAAATGCCTTGGCTTACTATGATAAGGACACCCCAGATAGATGGATGAGGGTGGCAGCCATGATTCCAGGGAAAACTGTTGGTGATGTGATCAAACAGTACAGAGAGCTTGAGGAAGATGTGAGTGTCATTGAAGCAGGTTTGATCCCAGTTCCTGGCTATACTACTGCCAGTTCTTTCACATTGGAGTGGGTTAACAATCAAGGCTATGATGAGTTCAAGCAGTTCTGTAATGTTGGTGCGAAAAGGGGTGCATCCACGAGGCCAACTGAGCAGGAAAGGAAGAAAGGAGTGCCATGGACTGAAGAGGAGCACAGGCAATTTCTGCTGGGTCTCAAGAAGTATGGTAAAGGGGATTGGAGAAACATCTCTAGGAACTTTGTGACCACAAGGACACCAACTCAGGTTGCAAGTCATGCTCAGAAGTACTTCATCAGGCAGCTTACAGGAGGGAAGGATAAGAGAAGATCCAGTATCCATGACATCACAATGGTTAATCTCCAAGAAACAAAATCTCCTTCATCAGACACTACCAAACCCTCTTCTCCACTTCAGAATCAGGCATTGTCTAGCATGGTTAAGGAGGAATATGAGTGGAAATTGCCATGTGAGGGCATGCCCATTGTTTTCAATTCCACAAGTGGAAACATGTTCATGTCAGCACCACTGCATGGCATTTCTTCATATGAATCTAGACCACAGGAGCAAAATTTACTTAGACATTCTCCATGGATGCCAGTTTTCACCTTGTGA
Predicted protein sequences of Glyma18g42530
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g42530.1 sequence type=predicted peptide gene model=Glyma18g42530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNRGIEVLSPASYLQNSNWLFQESKEARWTAEENKLFENALAYYDKDTPDRWMRVAAMIPGKTVGDVIKQYRELEEDVSVIEAGLIPVPGYTTASSFTLEWVNNQGYDEFKQFCNVGAKRGASTRPTEQERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLTGGKDKRRSSIHDITMVNLQETKSPSSDTTKPSSPLQNQALSSMVKEEYEWKLPCEGMPIVFNSTSGNMFMSAPLHGISSYESRPQEQNLLRHSPWMPVFTL*