Report for Sequence Feature Glyma18g47980
Feature Type: gene_model
Chromosome: Gm18
Start: 57505944
stop: 57510762
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g47980
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G17430 AT
Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein | chr5:5742542-5745568 REVERSE LENGTH=584
SoyBase E_val: 4.00E-144 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0009887 GO-bp
Annotation by Michelle Graham. GO Biological Process: organ morphogenesis
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
PTHR11795 Panther
PROTEIN KINASE
JGI ISS
PTHR11795:SF332 Panther
JGI ISS
PF00847 PFAM
AP2 domain
JGI ISS
UniRef100_E3V057 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Babyboom 1 n=1 Tax=Glycine max RepID=E3V057_SOYBN
SoyBase E_val: 0 ISS
UniRef100_UPI000152A5EE UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000152A5EE related cluster n=1 Tax=unknown RepID=UPI000152A5EE
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g47980
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g47980
Paralog Evidence Comments
Glyma09g38370 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g47980 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g244600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g47980
Coding sequences of Glyma18g47980
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g47980.2 sequence type=CDS gene model=Glyma18g47980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGGTCTATGAATTTGTTAGGTTTTTCTCTCTCTCCTCAAGAACACCCTTCTAGTCAAGATCACTCTCAAACGGCACCTTCTCGTTTTTGCTTCAACCCTGATGGAATCTCAAGCACTGATGTAGCAGGAGACTGCTTTGATCTCACTTCTGACTCAACTCCTCATTTACTCAACCTTCCCTCTTACGGCATATACGAAGCTTTTCATAGGAGCAACAATATTCACACCACTCAAGATTGGAAGGAGAACTACAACAGCCAAAACTTGCTATTGGGAACTTCATGCAGCAACCAAAACATGAACCACAACCATCAGCAACAACAACAACAACAGCCAAAGCTTGAAAACTTCCTCGGTGGACACTCATTTGGTGAACATGAGCAACCCTACGGTGGTAACTCAGCCTCTACAGAATACATGTTCCCGGCTCAGCCGGTATTGGCCGGTGGCGGCGGCGGTGGTAGCAATAGCAGCAACACAAGCAACAGTAGCTCCATAGGGTTATCCATGATAAAGACATGGTTGAGGAACCAACCACCACACTCAGAAAACAACAATAACAACAACAATGAAAGTGGTGGCAATAGTAGAAGCAGTGTGCAGCAGACTCTATCACTTTCCATGAGTACTGGTTCACAATCAAGCACATCACTACCCCTTCTCACTGCTAGTGTGGATAATGGAGAGAGTTCTTCTGATAACAAACAACCACATACCACGGCTGCACTTGATACAACCCAAACCGGAGCCATTGAAACTGCACCCAGAAAGTCCATTGACACTTTTGGACAGAGAACTTCTATCTACCGTGGTGTAACAAGGCATAGGTGGACGGGGAGGTATGAGGCTCACCTGTGGGATAATAGTTGTAGAAGAGAGGGACAAACTCGCAAAGGAAGGCAAGTTTACTTGGGAGGTTATGACAAAGAAGAAAAGGCAGCTAGAGCCTACGATTTGGCAGCACTAAAATACTGGGGAACAACTACGACAACAAATTTTCCAATTAGCCACTATGAGAAAGAGTTGGAAGAAATGAAGCACATGACTAGGCAAGAGTACGTTGCGTCATTGAGAAGGAAGAGTAGTGGGTTTTCTCGCGGGGCATCCATTTATCGAGGTGTGACGAGACACCATCAACATGGAAGATGGCAAGCGAGGATTGGAAGAGTTGCTGGCAACAAGGATCTCTACTTGGGAACTTTCAGCACCCAAGAGGAGGCAGCAGAAGCATATGATGTAGCAGCAATCAAATTCAGAGGACTAAGTGCTGTTACAAACTTTGACATGAGCAGATATGACGTGAAAAGCATACTTGAGAGCACCACTTTGCCAATTGGTGGTGCTGCAAAGCGTTTGAAGGATATGGAGCAGGTGGAACTGAGGGTGGAGAATGTTCATAGAGCAGATCAAGAAGATCATAGTAGCATCATGAACTCTCACTTAACTCAAGGAATCATTAACAACTATGCAGCAGGAGGAACAACAGCGACTCATCATCATAACTGGCACAATGCTCTTGCATTCCACCAACCTCAACCTTGCACCACCATACACTACCCTTATGGACAAAGAATTAATTGGTGCAAGCAAGAACAAGACAACTCTGATGCCTCTCACTCTTTGTCTTATTCAGATATTCATCAACTACAGCTAGGGAACAATGGCACACACAACTTCTTTCACACAAATTCAGGGTTGCACCCTATGTTAAGCATGGATTCTGCTTCCATTGACAATAGCTCTTCATCTAACTCTGTTGTTTATGATGGTTATGGAGGTGGTGGGGGCTATAATGTGATTCCTATGGGGACTACTACTACTGTTGTTGCAAATGATGGTGATCAAAATCCAAGAAGCAATCATGGTTTTGGTGATAATGAGATAAAGGCACTTGGTTATGAAAGTGTGTATGGTTCTACAACTGATCCTTATCATGCACATGCAAGGAACTTGTATTATCTTACTCAACAGCAACCATCTTCTGTTGATGCAGTGAAGGCTAGTGCATATGATCAAGGATCTGCATGCAATACTTGGGTTCCAACTGCTATTCCAACTCATGCACCAAGGTCTAGTACTAGTATGGCTCTCTGCCATGGTGCTACGCCCTTCTCTTTATTGCATGAATAG
Predicted protein sequences of Glyma18g47980
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g47980.2 sequence type=predicted peptide gene model=Glyma18g47980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGSMNLLGFSLSPQEHPSSQDHSQTAPSRFCFNPDGISSTDVAGDCFDLTSDSTPHLLNLPSYGIYEAFHRSNNIHTTQDWKENYNSQNLLLGTSCSNQNMNHNHQQQQQQQPKLENFLGGHSFGEHEQPYGGNSASTEYMFPAQPVLAGGGGGGSNSSNTSNSSSIGLSMIKTWLRNQPPHSENNNNNNNESGGNSRSSVQQTLSLSMSTGSQSSTSLPLLTASVDNGESSSDNKQPHTTAALDTTQTGAIETAPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKELEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLSAVTNFDMSRYDVKSILESTTLPIGGAAKRLKDMEQVELRVENVHRADQEDHSSIMNSHLTQGIINNYAAGGTTATHHHNWHNALAFHQPQPCTTIHYPYGQRINWCKQEQDNSDASHSLSYSDIHQLQLGNNGTHNFFHTNSGLHPMLSMDSASIDNSSSSNSVVYDGYGGGGGYNVIPMGTTTTVVANDGDQNPRSNHGFGDNEIKALGYESVYGSTTDPYHAHARNLYYLTQQQPSSVDAVKASAYDQGSACNTWVPTAIPTHAPRSSTSMALCHGATPFSLLHE*
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