SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research



Report for Sequence Feature Glyma19g40090

Feature Type:gene_model
Chromosome:Gm19
Start:46547961
stop:46552836
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G40940AT Annotation by Michelle Graham. TAIR10: ethylene response sensor 1 | chr2:17084635-17086819 REVERSE LENGTH=613 SoyBaseE_val: 0ISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0010105GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of ethylene mediated signaling pathway SoyBaseN/AISS
GO:0016310GO-bp Annotation by Michelle Graham. GO Biological Process: phosphorylation SoyBaseN/AISS
GO:0018106GO-bp Annotation by Michelle Graham. GO Biological Process: peptidyl-histidine phosphorylation SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0004673GO-mf Annotation by Michelle Graham. GO Molecular Function: protein histidine kinase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0051740GO-mf Annotation by Michelle Graham. GO Molecular Function: ethylene binding SoyBaseN/AISS
KOG0519 KOG Sensory transduction histidine kinase JGI ISS
PTHR24423Panther TWO COMPONENT SIGNAL TRANSDUCTION PROTEIN-RELATED JGI ISS
PTHR24423:SF158Panther JGI ISS
PF00512PFAM His Kinase A (phosphoacceptor) domain JGI ISS
PF01590PFAM GAF domain JGI ISS
PF02518PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JGI ISS
UniRef100_I1NB93UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NB93_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9ZSQ0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ethylene response sensor n=1 Tax=Vigna radiata RepID=Q9ZSQ0_VIGRA SoyBaseE_val: 0ISS

LocusGene SymbolProtein Name
ERS1 Ubiquitous, Histidine Kinase

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma03g37470 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g213300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g40090.2   sequence type=transcript   gene model=Glyma19g40090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCGTTAGATGATATTGGGCAGCAGGCGTCGGATTGGATAAAGAAAGAAGGCAAATGGGAATTTGGACCGGATACGCTGGATTTCACACCCATCTGTCAACACTCGAAGGAAAAGTTAACACACATTCATATAGTGTGGTCCAAATTCAAAGAAACTTCACAATGCCCATGGCCTAGAAAGTTGATTGATCACACAAACACCAAATCAGAATTCAGAATTCAGAATTCAGAACTCGCGGTTTACTAATATTATTCTTTTGAAATTTATTTTATACGTACCCAGAAAAAGTGAAGCTGAGTAGGCCCAGGCCACCGTCCAATGAATTCCCATTTCCCAGCCTCTAAACAGAAAACTTTTGGCAAATATTACCAAAAATGAGAAAATAAAATAAAAAGGTGCCAGCCAATCCGAAAATGATGTGGCACGTGTGTAAAGCGAAAAGTAAAATGAGAGAAGCATGGAAAAAAGGGCACGCCCGAGTGGGAGTAGGCGTTTGCCATGCTTGTCCGTGAGGGATGGGCTTAACGTTAATCTCATGTCATGCTTTTTAACCCACTCACACACTCTCTCTTCTTTCTTCATGCCCGCCTCCCTTTCTTCTTCCTTTGATCCGTTCATACGGTGGTTAGATGATGGAATCCTGTGATTGTATAGACACACAGTATCCTCCAGATGAACTTCTCGTAAAGTATCAGTATATCTCGGATGTGCTAATTGCTCTTGCCTATTTTTCTATTCCCGTGGAGCTCATCTATTTTGTTCAGAAGTCTGCTTTCTTTCCATATAGATGGGTGCTTATGCAGTTTGGTGCTTTTATTGTTCTCTGTGGAGCAACTCATTTCATAAACCTGTGGACATTCTCCCCACACTCTAAGGCTGTTGCTGTTGTCATGACGATTGCCAAAGTGTCGTGTGCTATTGTGTCATGTGCGACTGCTCTGATGCTTGTACACATTATTCCCGATCTGTTGAGTGTCAAGACGCGCGAATTATTCCTGAAGAACAAGGCTGAAGAGCTTGACAGGGAGATGGGACTTATTCTTACTCAAGAAGAGACTGGAAGGCATGTTAGAATGTTGACTCATGAAATTAGGAGCACACTTGACAGGCATACTATTTTAAAGACTACTCTTGTGGAGCTGGGGAGGACTTTGGGCTTGGAGGAGTGTGCATTATGGATGCCTTCAAGAAGTGGTCTGAATCTGCAACTTTCCCATACTTTAACCTACCACGTGCAAGTTGGGTCTACAGTGCAAACAAACAATCCTATTGTCAATGAAGTTTTCAACAGTCCTCGAGCTATGCGGATACCACCAACCTGTCCACTGGCCAGGATCAGACCTCTTGTGGGAAGATATGTGCCGCCTGAAGTTGTTGCTGTTCGGGTGCCACTTCTAAATTTGTCCAATTTTCAAATCAACGATTGGCCCGATATGTCAGCAAAAAGCTATGCAATCATGGTTCTCATCCTCCCTACTGATAGTGTTAGAAAATGGCGAGACCATGAGTTGGAACTTGTTGATGTGGTTGCAGATCAGGTAGCAGTTGCCCTTTCACATGCTGCTATTTTGGAGGAGTCTATGCGAGCCCGTGATCAACTCTTGGAGCAGAATGTCGCTTTAGATTTAGCTCGGCAAGAGGCAGAGATGGCAATTCATGCCCGCAACGATTTTCTTGCCGTCATGAATCATGAAATGAGGACGCCAATGCATGCAATTATAGCATTGTCATCCCTTCTCTTGGAGACTGAACTGACTCCAGAGCAGAGGGTTATGATAGAGACAGTGTTGAAGAGTAGTAATGTTTTGGCGACACTCATTAATGATGTTCTAGATCTTTCTCGACTTGAAGATGGTAGCCTCGAATTAGAAAAGGGAAAATTCAACCTTCATGGTGTTTTGGGAGAGATCGTTGAACTGATAAAACCAATAGCATCTGTGAAAAAGTTACCTATCACCTTAATTCTGTCTCCTGATCTGCCTACTCATGCCATTGGTGATGAAAAGCGACTTACACAAACTCTTTTGAATGTTGTGGGTAATGCTGTCAAATTCACTAAGGAGGGCTATGTTTCTATAAGAGTATCGGTTGCAAAACCAGAATCTTTACAGGATTGGCGACCTCCAGAGTTTTATCCAGCATCTAGTGATGGCCATTTCTACATACGAGTCCAGGTTAAGGACTCTGGATGTGGCATTCCCCCACAAGAAATTCCGCATCTCTTTACCAAGTTTGCCCAGTCTCGGAGTGGACCAGCTCGACCTAGCAGTGGTGCAGGTCTTGGGCTTGCCATTTGTAAAAGATTTGTAAACCTCATGGGAGGCCACATATGGATTGAGAGTGAGGGTCCTGACAAAGGAAGCACAGCTACATTTATAATCAAACTTGAGATTTGTGGCAATCCAGATCCATCCGATCATCAAGCTGCAAACAGAAGCCAAGCATACAGTGGAAGTGGTGGCCTCGCTAGATTTAAACCCTTCATCAAAGATGAAGACGACACTGGTTTTTCTACTAGACGCAATCAAAGAAGTTTCTAATATCCAAGACACCAACATTGCATACCTTTCGATCACAGTCGACAAGATGGAGTACACATACTTTCATTTTGCATGTGCTAAATTGTATAATTTACAGTTTGCAGCTGTAGAATAGGAATACTATGTCAGGCATATTTCTAACAAACAAGTCTTATGTGAACTCCTGCCGTATTAACTAGAATACAATGCAATGAAACAAATTTGAGAGACAATCCGTTACTTAATTTGACTTGTAGTATATATTGTGTTAGTGCCTTGTTACTTTTTTTCCGGCTTTTTAATGAACCAATGTTTACTTATATTTCC

>Glyma19g40090.1   sequence type=CDS   gene model=Glyma19g40090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGAATCCTGTGATTGTATAGACACACAGTATCCTCCAGATGAACTTCTCGTAAAGTATCAGTATATCTCGGATGTGCTAATTGCTCTTGCCTATTTTTCTATTCCCGTGGAGCTCATCTATTTTGTTCAGAAGTCTGCTTTCTTTCCATATAGATGGGTGCTTATGCAGTTTGGTGCTTTTATTGTTCTCTGTGGAGCAACTCATTTCATAAACCTGTGGACATTCTCCCCACACTCTAAGGCTGTTGCTGTTGTCATGACGATTGCCAAAGTGTCGTGTGCTATTGTGTCATGTGCGACTGCTCTGATGCTTGTACACATTATTCCCGATCTGTTGAGTGTCAAGACGCGCGAATTATTCCTGAAGAACAAGGCTGAAGAGCTTGACAGGGAGATGGGACTTATTCTTACTCAAGAAGAGACTGGAAGGCATGTTAGAATGTTGACTCATGAAATTAGGAGCACACTTGACAGGCATACTATTTTAAAGACTACTCTTGTGGAGCTGGGGAGGACTTTGGGCTTGGAGGAGTGTGCATTATGGATGCCTTCAAGAAGTGGTCTGAATCTGCAACTTTCCCATACTTTAACCTACCACGTGCAAGTTGGGTCTACAGTGCAAACAAACAATCCTATTGTCAATGAAGTTTTCAACAGTCCTCGAGCTATGCGGATACCACCAACCTGTCCACTGGCCAGGATCAGACCTCTTGTGGGAAGATATGTGCCGCCTGAAGTTGTTGCTGTTCGGGTGCCACTTCTAAATTTGTCCAATTTTCAAATCAACGATTGGCCCGATATGTCAGCAAAAAGCTATGCAATCATGGTTCTCATCCTCCCTACTGATAGTGTTAGAAAATGGCGAGACCATGAGTTGGAACTTGTTGATGTGGTTGCAGATCAGGTAGCAGTTGCCCTTTCACATGCTGCTATTTTGGAGGAGTCTATGCGAGCCCGTGATCAACTCTTGGAGCAGAATGTCGCTTTAGATTTAGCTCGGCAAGAGGCAGAGATGGCAATTCATGCCCGCAACGATTTTCTTGCCGTCATGAATCATGAAATGAGGACGCCAATGCATGCAATTATAGCATTGTCATCCCTTCTCTTGGAGACTGAACTGACTCCAGAGCAGAGGGTTATGATAGAGACAGTGTTGAAGAGTAGTAATGTTTTGGCGACACTCATTAATGATGTTCTAGATCTTTCTCGACTTGAAGATGGTAGCCTCGAATTAGAAAAGGGAAAATTCAACCTTCATGGTGTTTTGGGAGAGATCGTTGAACTGATAAAACCAATAGCATCTGTGAAAAAGTTACCTATCACCTTAATTCTGTCTCCTGATCTGCCTACTCATGCCATTGGTGATGAAAAGCGACTTACACAAACTCTTTTGAATGTTGTGGGTAATGCTGTCAAATTCACTAAGGAGGGCTATGTTTCTATAAGAGTATCGGTTGCAAAACCAGAATCTTTACAGGATTGGCGACCTCCAGAGTTTTATCCAGCATCTAGTGATGGCCATTTCTACATACGAGTCCAGGTTAAGGACTCTGGATGTGGCATTCCCCCACAAGAAATTCCGCATCTCTTTACCAAGTTTGCCCAGTCTCGGAGTGGACCAGCTCGACCTAGCAGTGGTGCAGGTCTTGGGCTTGCCATTTGTAAAAGATTTGTAAACCTCATGGGAGGCCACATATGGATTGAGAGTGAGGGTCCTGACAAAGGAAGCACAGCTACATTTATAATCAAACTTGAGATTTGTGGCAATCCAGATCCATCCGATCATCAAGCTGCAAACAGAAGCCAAGCATACAGTGGAAGTGGTGGCCTCGCTAGATTTAAACCCTTCATCAAAGATGAAGACGACACTGGTTTTTCTACTAGACGCAATCAAAGAAGTTTCTAA

>Glyma19g40090.2   sequence type=CDS   gene model=Glyma19g40090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGAATCCTGTGATTGTATAGACACACAGTATCCTCCAGATGAACTTCTCGTAAAGTATCAGTATATCTCGGATGTGCTAATTGCTCTTGCCTATTTTTCTATTCCCGTGGAGCTCATCTATTTTGTTCAGAAGTCTGCTTTCTTTCCATATAGATGGGTGCTTATGCAGTTTGGTGCTTTTATTGTTCTCTGTGGAGCAACTCATTTCATAAACCTGTGGACATTCTCCCCACACTCTAAGGCTGTTGCTGTTGTCATGACGATTGCCAAAGTGTCGTGTGCTATTGTGTCATGTGCGACTGCTCTGATGCTTGTACACATTATTCCCGATCTGTTGAGTGTCAAGACGCGCGAATTATTCCTGAAGAACAAGGCTGAAGAGCTTGACAGGGAGATGGGACTTATTCTTACTCAAGAAGAGACTGGAAGGCATGTTAGAATGTTGACTCATGAAATTAGGAGCACACTTGACAGGCATACTATTTTAAAGACTACTCTTGTGGAGCTGGGGAGGACTTTGGGCTTGGAGGAGTGTGCATTATGGATGCCTTCAAGAAGTGGTCTGAATCTGCAACTTTCCCATACTTTAACCTACCACGTGCAAGTTGGGTCTACAGTGCAAACAAACAATCCTATTGTCAATGAAGTTTTCAACAGTCCTCGAGCTATGCGGATACCACCAACCTGTCCACTGGCCAGGATCAGACCTCTTGTGGGAAGATATGTGCCGCCTGAAGTTGTTGCTGTTCGGGTGCCACTTCTAAATTTGTCCAATTTTCAAATCAACGATTGGCCCGATATGTCAGCAAAAAGCTATGCAATCATGGTTCTCATCCTCCCTACTGATAGTGTTAGAAAATGGCGAGACCATGAGTTGGAACTTGTTGATGTGGTTGCAGATCAGGTAGCAGTTGCCCTTTCACATGCTGCTATTTTGGAGGAGTCTATGCGAGCCCGTGATCAACTCTTGGAGCAGAATGTCGCTTTAGATTTAGCTCGGCAAGAGGCAGAGATGGCAATTCATGCCCGCAACGATTTTCTTGCCGTCATGAATCATGAAATGAGGACGCCAATGCATGCAATTATAGCATTGTCATCCCTTCTCTTGGAGACTGAACTGACTCCAGAGCAGAGGGTTATGATAGAGACAGTGTTGAAGAGTAGTAATGTTTTGGCGACACTCATTAATGATGTTCTAGATCTTTCTCGACTTGAAGATGGTAGCCTCGAATTAGAAAAGGGAAAATTCAACCTTCATGGTGTTTTGGGAGAGATCGTTGAACTGATAAAACCAATAGCATCTGTGAAAAAGTTACCTATCACCTTAATTCTGTCTCCTGATCTGCCTACTCATGCCATTGGTGATGAAAAGCGACTTACACAAACTCTTTTGAATGTTGTGGGTAATGCTGTCAAATTCACTAAGGAGGGCTATGTTTCTATAAGAGTATCGGTTGCAAAACCAGAATCTTTACAGGATTGGCGACCTCCAGAGTTTTATCCAGCATCTAGTGATGGCCATTTCTACATACGAGTCCAGGTTAAGGACTCTGGATGTGGCATTCCCCCACAAGAAATTCCGCATCTCTTTACCAAGTTTGCCCAGTCTCGGAGTGGACCAGCTCGACCTAGCAGTGGTGCAGGTCTTGGGCTTGCCATTTGTAAAAGATTTGTAAACCTCATGGGAGGCCACATATGGATTGAGAGTGAGGGTCCTGACAAAGGAAGCACAGCTACATTTATAATCAAACTTGAGATTTGTGGCAATCCAGATCCATCCGATCATCAAGCTGCAAACAGAAGCCAAGCATACAGTGGAAGTGGTGGCCTCGCTAGATTTAAACCCTTCATCAAAGATGAAGACGACACTGGTTTTTCTACTAGACGCAATCAAAGAAGTTTCTAA

>Glyma19g40090.1   sequence type=predicted peptide   gene model=Glyma19g40090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMESCDCIDTQYPPDELLVKYQYISDVLIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGAFIVLCGATHFINLWTFSPHSKAVAVVMTIAKVSCAIVSCATALMLVHIIPDLLSVKTRELFLKNKAEELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRSGLNLQLSHTLTYHVQVGSTVQTNNPIVNEVFNSPRAMRIPPTCPLARIRPLVGRYVPPEVVAVRVPLLNLSNFQINDWPDMSAKSYAIMVLILPTDSVRKWRDHELELVDVVADQVAVALSHAAILEESMRARDQLLEQNVALDLARQEAEMAIHARNDFLAVMNHEMRTPMHAIIALSSLLLETELTPEQRVMIETVLKSSNVLATLINDVLDLSRLEDGSLELEKGKFNLHGVLGEIVELIKPIASVKKLPITLILSPDLPTHAIGDEKRLTQTLLNVVGNAVKFTKEGYVSIRVSVAKPESLQDWRPPEFYPASSDGHFYIRVQVKDSGCGIPPQEIPHLFTKFAQSRSGPARPSSGAGLGLAICKRFVNLMGGHIWIESEGPDKGSTATFIIKLEICGNPDPSDHQAANRSQAYSGSGGLARFKPFIKDEDDTGFSTRRNQRSF*

>Glyma19g40090.2   sequence type=predicted peptide   gene model=Glyma19g40090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMESCDCIDTQYPPDELLVKYQYISDVLIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGAFIVLCGATHFINLWTFSPHSKAVAVVMTIAKVSCAIVSCATALMLVHIIPDLLSVKTRELFLKNKAEELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRSGLNLQLSHTLTYHVQVGSTVQTNNPIVNEVFNSPRAMRIPPTCPLARIRPLVGRYVPPEVVAVRVPLLNLSNFQINDWPDMSAKSYAIMVLILPTDSVRKWRDHELELVDVVADQVAVALSHAAILEESMRARDQLLEQNVALDLARQEAEMAIHARNDFLAVMNHEMRTPMHAIIALSSLLLETELTPEQRVMIETVLKSSNVLATLINDVLDLSRLEDGSLELEKGKFNLHGVLGEIVELIKPIASVKKLPITLILSPDLPTHAIGDEKRLTQTLLNVVGNAVKFTKEGYVSIRVSVAKPESLQDWRPPEFYPASSDGHFYIRVQVKDSGCGIPPQEIPHLFTKFAQSRSGPARPSSGAGLGLAICKRFVNLMGGHIWIESEGPDKGSTATFIIKLEICGNPDPSDHQAANRSQAYSGSGGLARFKPFIKDEDDTGFSTRRNQRSF*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo