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Report for Sequence Feature Glyma19g40640

Feature Type:gene_model
Chromosome:Gm19
Start:46997217
stop:47003370
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G02400AT Annotation by Michelle Graham. TAIR10: gibberellin 2-oxidase 6 | chr1:486964-489391 FORWARD LENGTH=329 SoyBaseE_val: 5.00E-130ISS
GO:0009639GO-bp Annotation by Michelle Graham. GO Biological Process: response to red or far red light SoyBaseN/AISS
GO:0010286GO-bp Annotation by Michelle Graham. GO Biological Process: heat acclimation SoyBaseN/AISS
GO:0045487GO-bp Annotation by Michelle Graham. GO Biological Process: gibberellin catabolic process SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0016706GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors SoyBaseN/AISS
GO:0052634GO-mf Annotation by Michelle Graham. GO Molecular Function: C-19 gibberellin 2-beta-dioxygenase activity SoyBaseN/AISS
KOG0143 KOG Iron/ascorbate family oxidoreductases JGI ISS
PTHR10209Panther FE(II)/ ASCORBATE OXIDASE SUPERFAMILY JGI ISS
PTHR10209:SF55Panther OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEI JGI ISS
PF03171PFAM 2OG-Fe(II) oxygenase superfamily JGI ISS
UniRef100_I1NBF0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NBF0_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q4W8C2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Gibberellin 2-oxidase n=1 Tax=Vigna angularis RepID=Q4W8C2_PHAAN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma03g38030 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g218700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g40640.1   sequence type=CDS   gene model=Glyma19g40640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGTGCCTTCTCCTTCTCCAACTTCTATCAAGACAAGTTACAAGAAAAAGAAGACGATAATAAAAATTCCAACGATAGACCTATCCATGGAAAGGACAGAGTTGTCGGAAACAGTGGTGAAAGCCTGCGAGGAATACGGCTTCTTCAAGGTTGTTAACCACAATGTTCCGAAGGAGGTTATTGCAAGAATGGAAGAAGAGGGTGCAGAGTTTTTTGGCAAAGCCACCTACGAGAAGCGTGGAGCTGGCCCAGCAAGTCCTTTCGGTTATGGCTTCAGCAATATCGGGCCCAACGGAGATATGGGTGACCTAGAGTATCTTCTGCTTCATGCTAACCCTCTTTCCGTCTCTGAGAGATCCAAAACCATCGCTAATGACTCCACCAAGTTCAGTTGTGTTGTGAATGATTATGTAGAAGCAGTAAAAGAAGTAACGTGCGAGATTTTAGATCTGGTGGTTGAGGGATTAGGGGTCCCAGACAAGTTCGCACTAAGCAGGCTCATTAGAGATGTGAATAGTGATTCAGTTCTGAGGATCAATCACTACCCTCCATTGAACCAGAAGGTGAAGGGCAACAAGAATAGCATTGGTTTTGGGGCGCATTCTGACCCTCAGATCTTGACCATCATGCGGTCCAATGACGTGGGTGGGCTTCAAATTTACACCCGTGATGGGTTGTGGATTCCTGTCCCTCCTGACCCCAATCAATTCTTTGTCATGGTGGGTGATGTCTTCCAGGTTTTGACAAATGGAAAGTTCATGAGTGTGAGGCACAGGGCATTAACCAACACATTGAAGGCAAGGATGTCAATGATGTACTTTGCAGCACCACCACTTGATTGGTGGATCACTCCGCTACCCAAGATGGTGTCACCACCACAAAATCCAAGTCTATATAAGCCCTTCACATGGGCCCAGTACAAGAAAGCAACATATTCCTTACGCCTCGGAGATTCTCGACTTGATCTCTTCAAGGCCCAGCTAGATACCCATCATGTATCTGCCTCTCCATCACAAATTCAATGTTAG

>Glyma19g40640.1   sequence type=predicted peptide   gene model=Glyma19g40640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVPSPSPTSIKTSYKKKKTIIKIPTIDLSMERTELSETVVKACEEYGFFKVVNHNVPKEVIARMEEEGAEFFGKATYEKRGAGPASPFGYGFSNIGPNGDMGDLEYLLLHANPLSVSERSKTIANDSTKFSCVVNDYVEAVKEVTCEILDLVVEGLGVPDKFALSRLIRDVNSDSVLRINHYPPLNQKVKGNKNSIGFGAHSDPQILTIMRSNDVGGLQIYTRDGLWIPVPPDPNQFFVMVGDVFQVLTNGKFMSVRHRALTNTLKARMSMMYFAAPPLDWWITPLPKMVSPPQNPSLYKPFTWAQYKKATYSLRLGDSRLDLFKAQLDTHHVSASPSQIQC*







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