SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.01g120400

Feature Type:gene_model
Chromosome:Gm01
Start:41337574
stop:41341197
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01g120400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G05580.1AT fatty acid desaturase 8 JGI N/AIEA
GO:0006629GO-bp lipid metabolic process EnsemblGenomesN/AIEA
GO:0006629GO-bp lipid metabolic process JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016717GO-mf oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water EnsemblGenomesN/AIEA
GO:0016717GO-mf oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water JGI N/AIEA
PTHR19353Panther FATTY ACID DESATURASE 2 JGI N/AIEA
PTHR19353:SF7Panther JGI N/AIEA
PF00487PFAM Fatty acid desaturase JGI N/AIEA
PF11960PFAM Domain of unknown function (DUF3474) JGI N/AIEA
PWY-6013SoyCyc9 crepenynate biosynthesis Plant Metabolic Network ISS
GN7V-55211SoyCyc9-rxn Δ12-fatty acid dehydrogenase Plant Metabolic Network ISS

Proteins Associated with Glyma.01g120400
LocusGene SymbolProtein Name
FAD8-1 fatty acid desaturase 8

Expression Patterns of Glyma.01g120400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.01g120400
ParalogEvidenceComments
Glyma.03g056700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01g120400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma01g29630 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.01g120400
>Glyma.01g120400.2 sequence-type=transcript locus=Glyma.01g120400 ID=Glyma.01g120400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CATCATCAACCAATGGGGTTCCACCAAAAGCAAAGGCAATAGAATAGGAGTCTCCACTTCAAGTTGCACCAAAAAAACAAGGTCAAACCCAAAAGGAAAGGTAGGGAGCAGTGAATTTCCATTCCATCAAGGGATGGGAACCCAACACAAGAACGAGGAATTTAAAAGTGAACACTACAGAAAAAAAAAATGTCCTAATTGCTCTACACCCTCTTATATATAAAGATGGTGATTTTAATCTCTAGGCCACAAAAATGAACCAGATTTGAGAACATCCCTTGTATTGAAGAACACCCTCTTTGGATACCCTTTTGTTAAAGCCAAGACTTTTCTCAGATTTGAGAAGAAGAAGAAGGTGGGGGAGGAGATAGTAATAGGGAAAACATAAGAGAGAGAAAAATAAAGCACAAACGTGAGGCCGTTGTTGAAACACACAAGTTGTGTTCCTGTTGTGAATATCTTAAATTTCTCAACTTGTGTTTGTTTGTCGTCCTATAATTGAACCATGAAGTAGTAGTGAAGAACTAATCAGCCACAAATCCAAACGACCCCTTTGGCCTAAAGCTCCCTCCTTTTCTCCAATGGCAACATGGGTTTTATCAGAATGTGGCTTAAGGTCTCTTCCACCAGTGTTTCCCAGGCCAACAAGACCCATTTCGTGCCAAAAGCCTTCAAAGTTTAGATTTTTAAGCATAAACAAGGGGGTGGCAGATCTGAATCTCCAACCAAGAGGGTTCACATGTTATAACTTTAGGGAGAGAAAGTGGGAATCGGGAGTGAGTGCTCCACTGAAGGTTGCCACCACTGAGGGAGAGGAAGAAGAGGGAATCAATGGGGCTAATGGGGTTGTTGAGGAAGTACCAGAATTTGACCCTAGTGCACCACCACCCTTCAAATTGGCAGATATTAGAGCTTCCATTCCTAAACACTGTTGGGTGAAGGACCCTTGGAAGTCCATGAGTTATGTTGTTAGAGATGTCATTGTGGTTTTTGGGTTGGCTGTTGCTGCAGCTTATCTCAACAATTGGGTTGTTTGGCCTCTCTATTGGGCTGCTCAGGGAACCATGTTCTGGGCCCTCTTTGTTCTTGGACATGATTGTGGTCATGGAAGCTTTTCAAACAATCCTAAGCTGAACAGTGTTGCTGGCCACTTGCTGCATTCTTCAATTCTAGTACCATATCATGGATGGAGAATTAGTCATAGAACACATCATCAAAACCATGGCCATGTTGAAAACGATGAATCTTGGCACCCGTTGCCGGAGAAAATTTTCAAGAGCTTGGATAATGTAACACGTATTTTAAGATTTACATTACCTTTTCCATTGCTTGCATATCCTATCTACCTGTGGAGCAGGAGTCCCGGGAAGACTGGTTCTCACTTTAATCCTGACAGTGACTTGTTTGTTCCCAGTGAGAGAAAAGATGTTATTACCTCAACAGTTTGTTGGACAGCTATGGCTGCTTTGCTTGTTGGTTTGGGATTTGTGATGGGTCCTGTTCAATTGCTTAAGCTTTATGGCATTCCCTATGTGATTTTTGTTATGTGGTTGGATTTGGTGACTTATTTGCATCACCATGGCCATGAAGACAAGTTACCTTGGTATCGTGGAGAGGAATGGAGCTACCTTAGGGGTGGCCTTACAACTATTGATCGTGACTATGGATGGATCAACAACATTCACCATGACATTGGAACCCATGTCATTCATCACCTCTTTCCTCAAATACCACACTATCACTTAATAGAAGCAACTGAGGCAGCTAAGCCGGTTCTTGGCCTATACTACCGGGAGCCAAAGAAGTCTAGTCCTCTTCCAATTTACCTTATTGGAGAATTGTTAAGAAGCATGAAGAAAGACCATTTTGTCAGTAACACTGGTGATATTGTGTACTATCAAACAGACCCTACACTTAGTAGCTCTTCCACATCACAGTAAATCATCCATTTTTTCCTCTTGAATACAAGAGAGGCCTCAGAATTATGCTGCATATGACAATATCTGAACCTTGAAGATTGTGTACTCTCATTGAGTCCTACTAGTTGAATTGCTCAAGTAGGAATGAATGCATGACAAATTTGATTGTAATTGCATGCATTTTAAAGCATGATCAGGGTATATATGTAATGTGTTCTCGTTGAAGAACAAGGAATCTGTAAATTGCTCATTCTTGATGAAGGATTTAGTTACAATTTTTTTCTCAAACTCAAACACCAATATTGAATACAATTGTAGCAAGTAGCAACTGATGTCATTTTCTTCTGCTTATCACTTTCCGTATTCATCTTGAATTAGTGGTTGCTGATATTTCTTGAGATATTGTGTCACTTTAAGTAATCTTATCGTGCACTTTATTTAAGGTTGTTTGTGTTTTTGTCCAATTATGCAAGGTTGCAAAATATGGTGTTTCTATCAATGGGTAATTAATTCCATTTTTTTAGTCAGGTTTTGAGTCTGAGTATTGTATATG
Coding sequences of Glyma.01g120400
>Glyma.01g120400.1 sequence-type=CDS polypeptide=Glyma.01g120400.1.p locus=Glyma.01g120400 ID=Glyma.01g120400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAACATGGGTTTTATCAGAATGTGGCTTAAGGTCTCTTCCACCAGTGTTTCCCAGGCCAACAAGACCCATTTCGTGCCAAAAGCCTTCAAAGTTTAGATTTTTAAGCATAAACAAGGGGGTGGCAGATCTGAATCTCCAACCAAGAGGGTTCACATGTTATAACTTTAGGGAGAGAAAGTGGGAATCGGGAGTGAGTGCTCCACTGAAGGTTGCCACCACTGAGGGAGAGGAAGAAGAGGGAATCAATGGGGCTAATGGGGTTGTTGAGGAAGTACCAGAATTTGACCCTAGTGCACCACCACCCTTCAAATTGGCAGATATTAGAGCTTCCATTCCTAAACACTGTTGGGTGAAGGACCCTTGGAAGTCCATGAGTTATGTTGTTAGAGATGTCATTGTGGTTTTTGGGTTGGCTGTTGCTGCAGCTTATCTCAACAATTGGGTTGTTTGGCCTCTCTATTGGGCTGCTCAGGGAACCATGTTCTGGGCCCTCTTTGTTCTTGGACATGATTGTGGTCATGGAAGCTTTTCAAACAATCCTAAGCTGAACAGTGTTGCTGGCCACTTGCTGCATTCTTCAATTCTAGTACCATATCATGGATGGAGAATTAGTCATAGAACACATCATCAAAACCATGGCCATGTTGAAAACGATGAATCTTGGCACCCGTTGCCGGAGAAAATTTTCAAGAGCTTGGATAATGTAACACGTATTTTAAGATTTACATTACCTTTTCCATTGCTTGCATATCCTATCTACCTGTGGAGCAGGAGTCCCGGGAAGACTGGTTCTCACTTTAATCCTGACAGTGACTTGTTTGTTCCCAGTGAGAGAAAAGATGTTATTACCTCAACAGTTTGTTGGACAGCTATGGCTGCTTTGCTTGTTGGTTTGGGATTTGTGATGGGTCCTGTTCAATTGCTTAAGCTTTATGGCATTCCCTATGTGATTTTTGTTATGTGGTTGGATTTGGTGACTTATTTGCATCACCATGGCCATGAAGACAAGTTACCTTGGTATCGTGGAGAGGAATGGAGCTACCTTAGGGGTGGCCTTACAACTATTGATCGTGACTATGGATGGATCAACAACATTCACCATGACATTGGAACCCATGTCATTCATCACCTCTTTCCTCAAATACCACACTATCACTTAATAGAAGCAACTGAGGCAGCTAAGCCGGTTCTTGGCCTATACTACCGGGAGCCAAAGAAGTCTAGTCCTCTTCCAATTTACCTTATTGGAGAATTGTTAAGAAGCATGAAGAAAGACCATTTTGTCAGTAACACTGGTGATATTGTGTACTATCAAACAGACCCTACACTTAGTAGCTCTTCCACATCACAGTAA

>Glyma.01g120400.2 sequence-type=CDS polypeptide=Glyma.01g120400.2.p locus=Glyma.01g120400 ID=Glyma.01g120400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAACATGGGTTTTATCAGAATGTGGCTTAAGGTCTCTTCCACCAGTGTTTCCCAGGCCAACAAGACCCATTTCGTGCCAAAAGCCTTCAAAGTTTAGATTTTTAAGCATAAACAAGGGGGTGGCAGATCTGAATCTCCAACCAAGAGGGTTCACATGTTATAACTTTAGGGAGAGAAAGTGGGAATCGGGAGTGAGTGCTCCACTGAAGGTTGCCACCACTGAGGGAGAGGAAGAAGAGGGAATCAATGGGGCTAATGGGGTTGTTGAGGAAGTACCAGAATTTGACCCTAGTGCACCACCACCCTTCAAATTGGCAGATATTAGAGCTTCCATTCCTAAACACTGTTGGGTGAAGGACCCTTGGAAGTCCATGAGTTATGTTGTTAGAGATGTCATTGTGGTTTTTGGGTTGGCTGTTGCTGCAGCTTATCTCAACAATTGGGTTGTTTGGCCTCTCTATTGGGCTGCTCAGGGAACCATGTTCTGGGCCCTCTTTGTTCTTGGACATGATTGTGGTCATGGAAGCTTTTCAAACAATCCTAAGCTGAACAGTGTTGCTGGCCACTTGCTGCATTCTTCAATTCTAGTACCATATCATGGATGGAGAATTAGTCATAGAACACATCATCAAAACCATGGCCATGTTGAAAACGATGAATCTTGGCACCCGTTGCCGGAGAAAATTTTCAAGAGCTTGGATAATGTAACACGTATTTTAAGATTTACATTACCTTTTCCATTGCTTGCATATCCTATCTACCTGTGGAGCAGGAGTCCCGGGAAGACTGGTTCTCACTTTAATCCTGACAGTGACTTGTTTGTTCCCAGTGAGAGAAAAGATGTTATTACCTCAACAGTTTGTTGGACAGCTATGGCTGCTTTGCTTGTTGGTTTGGGATTTGTGATGGGTCCTGTTCAATTGCTTAAGCTTTATGGCATTCCCTATGTGATTTTTGTTATGTGGTTGGATTTGGTGACTTATTTGCATCACCATGGCCATGAAGACAAGTTACCTTGGTATCGTGGAGAGGAATGGAGCTACCTTAGGGGTGGCCTTACAACTATTGATCGTGACTATGGATGGATCAACAACATTCACCATGACATTGGAACCCATGTCATTCATCACCTCTTTCCTCAAATACCACACTATCACTTAATAGAAGCAACTGAGGCAGCTAAGCCGGTTCTTGGCCTATACTACCGGGAGCCAAAGAAGTCTAGTCCTCTTCCAATTTACCTTATTGGAGAATTGTTAAGAAGCATGAAGAAAGACCATTTTGTCAGTAACACTGGTGATATTGTGTACTATCAAACAGACCCTACACTTAGTAGCTCTTCCACATCACAGTAA
Predicted protein sequences of Glyma.01g120400
>Glyma.01g120400.1.p sequence-type=predicted peptide transcript=Glyma.01g120400.1 locus=Glyma.01g120400 ID=Glyma.01g120400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATWVLSECGLRSLPPVFPRPTRPISCQKPSKFRFLSINKGVADLNLQPRGFTCYNFRERKWESGVSAPLKVATTEGEEEEGINGANGVVEEVPEFDPSAPPPFKLADIRASIPKHCWVKDPWKSMSYVVRDVIVVFGLAVAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNPKLNSVAGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLPEKIFKSLDNVTRILRFTLPFPLLAYPIYLWSRSPGKTGSHFNPDSDLFVPSERKDVITSTVCWTAMAALLVGLGFVMGPVQLLKLYGIPYVIFVMWLDLVTYLHHHGHEDKLPWYRGEEWSYLRGGLTTIDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEAAKPVLGLYYREPKKSSPLPIYLIGELLRSMKKDHFVSNTGDIVYYQTDPTLSSSSTSQ*

>Glyma.01g120400.2.p sequence-type=predicted peptide transcript=Glyma.01g120400.2 locus=Glyma.01g120400 ID=Glyma.01g120400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATWVLSECGLRSLPPVFPRPTRPISCQKPSKFRFLSINKGVADLNLQPRGFTCYNFRERKWESGVSAPLKVATTEGEEEEGINGANGVVEEVPEFDPSAPPPFKLADIRASIPKHCWVKDPWKSMSYVVRDVIVVFGLAVAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNPKLNSVAGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLPEKIFKSLDNVTRILRFTLPFPLLAYPIYLWSRSPGKTGSHFNPDSDLFVPSERKDVITSTVCWTAMAALLVGLGFVMGPVQLLKLYGIPYVIFVMWLDLVTYLHHHGHEDKLPWYRGEEWSYLRGGLTTIDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEAAKPVLGLYYREPKKSSPLPIYLIGELLRSMKKDHFVSNTGDIVYYQTDPTLSSSSTSQ*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo