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Report for Sequence Feature Glyma.02g132100

Feature Type:gene_model
Chromosome:Gm02
Start:13635757
stop:13639351
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g132100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G15620.1AT nitrite reductase 1 JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0020037GO-mf heme binding EnsemblGenomesN/AIEA
GO:0020037GO-mf heme binding JGI N/AIEA
GO:0048307GO-mf ferredoxin-nitrite reductase activity EnsemblGenomesN/AIEA
GO:0051536GO-mf iron-sulfur cluster binding EnsemblGenomesN/AIEA
GO:0051536GO-mf iron-sulfur cluster binding JGI N/AIEA
KOG0560 KOG Sulfite reductase (ferredoxin) JGI N/AIEA
PTHR11493Panther FAMILY NOT NAMED JGI N/AIEA
PTHR11493:SF37Panther JGI N/AIEA
PF01077PFAM Nitrite and sulphite reductase 4Fe-4S domain JGI N/AIEA
PF03460PFAM Nitrite/Sulfite reductase ferredoxin-like half domain JGI N/AIEA
PWY-381SoyCyc9 nitrate reduction II (assimilatory) Plant Metabolic Network ISS
GN7V-51996SoyCyc9-rxn ferredoxin-nitrite reductase Plant Metabolic Network ISS

Proteins Associated with Glyma.02g132100
LocusGene SymbolProtein Name
NIR1-1 nitrate reductase 1 gene 1
NIR nitrate reductase

Expression Patterns of Glyma.02g132100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g132100
ParalogEvidenceComments
Glyma.07g212800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g132100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g14910 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g132100
>Glyma.02g132100.1 sequence-type=CDS polypeptide=Glyma.02g132100.1.p locus=Glyma.02g132100 ID=Glyma.02g132100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTACACGTTCCTTCTTCTTCTTCCAATAATGTCTTCTTCATTCTCTGTTCGTTTTCTTGCTCCTCTTCCTCCATCATCATCATCATGCTTCCCCACCAGCTCTCTGCCGAAGACATGGCTCTGCGCCGCCGCCACCCCAACGGTGGCTCCGTCAACCACCACCTCCTCCTCGGAGGTGGAGGCTTCCAGGTTGGAGCCTAGAGTGGAGGAGAGAGATGGGTTCTGGGTTTTAAAGGAAGAGTACAGGGGAGGCATCAGCCCTCAGGAGAAAGTGAAGCTTGAGAAAGATCCCATGAAGCTTTTCATGGAAGGTGGGATTGAGGAATTGGCTAAGATGTCCCTTGAAGAAATTGAGAGCTCCAAGCACACCAAGGATGATATTGATGTTAGACTCAAGTGGCTTGGCCTTTTTCATAGGAGAAAGCAGCATCATGGTAGATTTATGATGAGGCTGAAGCTTCCAAATGGGGTGACAACAAGTGCCCAAACACGATACTTGGCTAGTGTGATAAGGAAATACGGAAAAGATGGGTGTGCTGATGTAACAACGAGGCAGAATTGGCAAATTCGTGGTGTGGTGCTACCTGATGTGCCAGAAATTCTAAAGGGCCTCGACGAGGTTGGATTGACTAGTCTTCAGAGTGGAATGGACAATGTGAGAAATCCTGTTGGTAACCCTCTTGCAGGCATTGACCCTGATGAGATTGTTGACACTCGACCATACAACAACTTGTTATCTCAATTCATCACTGCCAATTCACGTGGCAACCCCGCCATGTCAAACTTGCCTAGGAAGTGGAATGTGTGTGTGGTTGGATCCCATGATCTGTTTGAGCATCCACACATCAATGATCTGGCTTACATGCCTGCAAACAAGGATGGTCGTTTTGGATTCAACTTACTTGTTGGTGGTTTCTTCAGTGCCAAGAGATGTGCTGAAGCAATTCCACTTGATGCATGGGTCTCCGCAGATGATGTAATCCCACTTTGTAAAGCTGTCCTTGAGGCCTATAGGGACCTTGGCTTCAGAGGGAACAGACAGAAAACAAGAATGATGTGGTTGATTGACGAATTGGGGATAGAAGTATTCAGGTCAGAGGTGGAGAAAAGAATGCCAGGGAAGAAGCTGGAGAGAGCATCTAAGGAAGAACTGGTTAAGAAACAATGGGAAAGAAGAGACTACTTAGGTGTTCATCCACAGAAACAAGAGGGCCTAAGCTATGTTGGGATTCACATTCCAGTTGGTAGAGTCCAAGCAGATGACATGGATGAGTTGGCTCGTTTAGCCGACGAATACGCCACCGGTGAGCTCAGGCTCACAGTGGAGCAGAACATTATAATCCCAAATGTGGACAATAACAAAATTGATGGCTTGCTCAATGAGCCTCTCTTGAAGGGGAGATTCTCACCCGAACCTTCTCTATTGATGAAGACTCTGGTGGCATGCACTGGTAATCAATTTTGTGGACAAGCTATAATTGAGACAAAGGAAAGGGCATTGAAAGTGACTGAGGAAGTGGAGAGGCAAGTGGCTGTGACTAGGCCTGTGAGAATGCATTGGACTGGCTGCCCTAACACTTGTGGACAGGTTCAAGTTGCTGACATTGGTTTCATGGGGTGCATGGCTAGGGATGACAATGGTAAGGCCACTGAAGGTGTGGATATTTTCCTTGGAGGGAGAATTGGAAGTGATTCACATCTGGCTCAAGTGTATAAGAAGGGTGTGCCTTGCAAGGACTTGGTGCCTGTTGTGGTAGACATACTAGTAAAACACTTTGGAGCTGTCCTAAGGAATAGAGAGGAAGGGGAAGATTAA
Predicted protein sequences of Glyma.02g132100
>Glyma.02g132100.1.p sequence-type=predicted peptide transcript=Glyma.02g132100.1 locus=Glyma.02g132100 ID=Glyma.02g132100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYTFLLLLPIMSSSFSVRFLAPLPPSSSSCFPTSSLPKTWLCAAATPTVAPSTTTSSSEVEASRLEPRVEERDGFWVLKEEYRGGISPQEKVKLEKDPMKLFMEGGIEELAKMSLEEIESSKHTKDDIDVRLKWLGLFHRRKQHHGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLDEVGLTSLQSGMDNVRNPVGNPLAGIDPDEIVDTRPYNNLLSQFITANSRGNPAMSNLPRKWNVCVVGSHDLFEHPHINDLAYMPANKDGRFGFNLLVGGFFSAKRCAEAIPLDAWVSADDVIPLCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEVFRSEVEKRMPGKKLERASKEELVKKQWERRDYLGVHPQKQEGLSYVGIHIPVGRVQADDMDELARLADEYATGELRLTVEQNIIIPNVDNNKIDGLLNEPLLKGRFSPEPSLLMKTLVACTGNQFCGQAIIETKERALKVTEEVERQVAVTRPVRMHWTGCPNTCGQVQVADIGFMGCMARDDNGKATEGVDIFLGGRIGSDSHLAQVYKKGVPCKDLVPVVVDILVKHFGAVLRNREEGED*






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