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Report for Sequence Feature Glyma.03g257600

Feature Type:gene_model
Chromosome:Gm03
Start:45208580
stop:45211544
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g257600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G46500.1AT phosphoinositide 4-kinase gamma 4 JGI N/AIEA
GO:0016310GO-bp phosphorylation EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0016301GO-mf kinase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016773GO-mf phosphotransferase activity, alcohol group as acceptor JGI N/AIEA
KOG2381 KOG Phosphatidylinositol 4-kinase JGI N/AIEA
PTHR15245Panther SYMPLEKIN-RELATED JGI N/AIEA
PTHR15245:SF11Panther PHOSPHATIDYLINOSITOL 3-KINASE-RELATED PROTEIN KINASE JGI N/AIEA
PF00240PFAM Ubiquitin family JGI N/AIEA
PF00454PFAM Phosphatidylinositol 3- and 4-kinase JGI N/AIEA
PWY-6351SoyCyc9 D-myo-inositol (1,4,5)-trisphosphate biosynthesis Plant Metabolic Network ISS
PWY-6352SoyCyc9 3-phosphoinositide biosynthesis Plant Metabolic Network ISS
GN7V-64708SoyCyc9-rxn 1-phosphatidylinositol 4-kinase Plant Metabolic Network ISS

Expression Patterns of Glyma.03g257600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g257600
ParalogEvidenceComments
Glyma.19g256100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g257600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g41850 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g257600
>Glyma.03g257600.1 sequence-type=CDS polypeptide=Glyma.03g257600.1.p locus=Glyma.03g257600 ID=Glyma.03g257600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCATCAGCTGGTGTCTCTACACTTACTGTGGTTCCCACTGAGCCATTGTTGTCACCAAAGGCATTCCCTTTTCCAATTCCATCACACTTGTCTTTGGAAGATAAATCCATTTTCATATACCTCTCCTTTTCGGGCTCATTGACTCCCATCCGTGTTATGGAGTGGGATACCATTGAATCTGTCAAATTCAAAATCCAAAGGTGTGAAAGCCTTCCATTTTTAACAAACAAGCAGAAGTTGGTTTATGCTGGCCGAGAGCTTGCGCGAAGTGATACGCCGCTCAAGGACTATGGAGTAACGGATGGAAATGTTTTGCATTTGGTAATCAAACTGTCAGATCTTCAGGTCATCAATGTGAAAACTTCTTGTGGGAAGGAGTTCACGTTTCAGGTCGAACGAGGCAGGGATGTCGGGTACATAAAGCAGCGGATCGCCAGAAGGGAGAAACAGTTTGATGATCCTGAGGAGCAGGAGCTTGTGTGCAATGGGGAAAGGCTTGAGGACCAGAGGCTTATTGATGATATCTGTTGCAAACATAATGATGCAGCAGTCCATCTGTTTGTGAGAAAAAAGCATGTTAAAGTTCAGAGGAGACCCCTTGAGTTGTCCATTGTAGCAAAAGATTTGATTGATAAGAAAAAAAATGATGTCAATGGAAATACTAATCGGAGAAGTTATGATGTTGGTAAAGAAGATACTATTAGGAAGTCTGATGTCATTCAAAGAGCTGTGCCGAGAAAGCCTCCTGGTAGAGATTTTATTTTGGAGCCAGTTATTATTAACCATAAAATTGAATTAGCTCCAGCTATTCGGAATATGGTGAACTCTACATATGAGGGACTTGGCAGTGGAAAATGTCCAATCAGATCTGCAGAGGGTACAGGAGGAGCTTACTTTATGCTTGATTCAGCAGAGCAAAAGTATGTGTCTGTTTTTAAGCCTATTGATGAAGAACCAATGGCTGTGAATAACCCTCGAGGTCTTCCTTTGTCATTAGATGGTGAAGGCTTAAAAAAGGGTACAAGAGTTGGTCAAGGAGCATTCAGGGAAGTAGCAGCCTATGTTCTAGACCATCCATTGAGTGGGTGCCAGCGCCACTCATTATTTGGTGATGGGAAGGGCTTTGCTGGTGTTCCCCCAACATTGATGGTTAAGTGCTTGCATAAAGCATTCAACTATCCCCGAGAATTGACTCCTAAGATTGGCTCCTTGCAAATGTTCACAGAAAATAGTGGAAGTTGTGAAGATATGGGCCCGGGGGCTTTCCCAGTAAAGGAGGTACATAAAATTACTGTTTTGGACATAAGACTGGCAAATGCAGATAGGCATGCTGGGAATATTTTGATCAGCAAAGAGGAGGACAACAACCAGTCTGTTCTGATTCCAATTGATCATGGATACTGCTTGCCCACAAGTTTTGAAGATTGCACCTTTGAATGGCTTTACTGGCCTCAAGCTCGCCAGCCATACTCCTCAGAAACTATTGACTACATAAAGTCACTGGATGCTGAAGAAGACATTGCCCTTTTGAAGTTTCATGGATGGGATCTGCCAGTTGAATGTGCCCGCACTCTTAGGATCTCAACCATGCTTTTGAAGAAAGGGGTAGAGAGAGGATTGACCCCTTTTGCCATTGGAAGCCTGATGTGCAGGGAATCCTTGAACAAGGAATCTGTGATAGAAGAAGTAGTACAAGCAGCACTGGATTCTGTTCTTCCTGGCACAAGTGAAGCTACATTGCTGGATTCTGTTTCCCAAATCCTGGACTTGCACCTCGATGAGATTGTCAGATCTCATTTATAA
Predicted protein sequences of Glyma.03g257600
>Glyma.03g257600.1.p sequence-type=predicted peptide transcript=Glyma.03g257600.1 locus=Glyma.03g257600 ID=Glyma.03g257600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSAGVSTLTVVPTEPLLSPKAFPFPIPSHLSLEDKSIFIYLSFSGSLTPIRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDTPLKDYGVTDGNVLHLVIKLSDLQVINVKTSCGKEFTFQVERGRDVGYIKQRIARREKQFDDPEEQELVCNGERLEDQRLIDDICCKHNDAAVHLFVRKKHVKVQRRPLELSIVAKDLIDKKKNDVNGNTNRRSYDVGKEDTIRKSDVIQRAVPRKPPGRDFILEPVIINHKIELAPAIRNMVNSTYEGLGSGKCPIRSAEGTGGAYFMLDSAEQKYVSVFKPIDEEPMAVNNPRGLPLSLDGEGLKKGTRVGQGAFREVAAYVLDHPLSGCQRHSLFGDGKGFAGVPPTLMVKCLHKAFNYPRELTPKIGSLQMFTENSGSCEDMGPGAFPVKEVHKITVLDIRLANADRHAGNILISKEEDNNQSVLIPIDHGYCLPTSFEDCTFEWLYWPQARQPYSSETIDYIKSLDAEEDIALLKFHGWDLPVECARTLRISTMLLKKGVERGLTPFAIGSLMCRESLNKESVIEEVVQAALDSVLPGTSEATLLDSVSQILDLHLDEIVRSHL*






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