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Report for Sequence Feature Glyma.04g018500

Feature Type:gene_model
Chromosome:Gm04
Start:1447509
stop:1453130
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g018500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G20540.1AT Transducin/WD40 repeat-like superfamily protein JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG1007 KOG WD repeat protein TSSC1, WD repeat superfamily JGI N/AIEA
PTHR14205Panther WD-REPEAT PROTEIN JGI N/AIEA
PTHR14205:SF1Panther JGI N/AIEA
PF00400PFAM WD domain, G-beta repeat JGI N/AIEA

Expression Patterns of Glyma.04g018500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g018500
ParalogEvidenceComments
Glyma.06g018800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g018500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g02030 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g018500
>Glyma.04g018500.2 sequence-type=transcript locus=Glyma.04g018500 ID=Glyma.04g018500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGCAACGGCGTTGCCATTTTCCGTGTTTAACTCTGCTCTCTCAGGGCAGTGTGTGGATTGAGGTGTCGCACGGTGGGTGTAGCAGTAGATTCCGCCTCCAAGAAAAGAAAGAGCAATGCAAGCTGCATCTTCAGGCATCGGATACGGTCTAAAATATCAGGCTAGATGCATATCCGATGTGAAGGCAGACACAGATCACACTAGCTTCCTCGCTGGCACTCTCAGCCTCAAAGAAGAAAATGAGGTACATCTGATTCGGCTTTCGTCGAGTGGAACCGAACTCTTCTGCGAGGGATTGTTCTCTCATCCCAACGAGATCTGGGACCTTGTTTCTTGCCCCTTTGATCAACGGATCTTTTCAACCGTCTACTCTAACGGTGAAACGTATGGGGCAGCAATATGGCAGATCCCCGAGCTATATGGCGAGTTAAATTCACCTCAGCTAGAGAGAATTACCTCCCTCGACACTGATTCTGGCAAGATTAAATGTATTCTATGGTGGCCATCTGGAAGGCATGATAAATTGATCAGCATCAATGAGGAAAACCTGTACTTGTGGAATTTAGATGTTTCAAAGAAAACTGCTCAGGTACAATCACAAGATTCAGCTGGTATGCTGCACAAGTTATCTGGAGGGGCATGGGATCCACATGATGTGAGTTCTGTTGCTGCAACTTGTGAATCGTATCTCCAATTTTGGGATGTCAGAACAATGAAGAAGACTATGTCAATCGAGTGTTCCCATGTATGCAGTGTTGATTACCATCCCCAAAAGCAGCACATACTTGTTACTGCAGAACATGAGTCTGGGATACACATTTGGGATCTAAGAAAACCTAAAGTTCCCATCCAAGAGCTTCCAGGACATACTCATTGGACTTGGACTGTCAAGTGTAACCCAGAGTATGATGGAATGATCTTGAGTGCTGGTACGGATTCAACTGTCAACTTGTGGCTTGCCTCAACAAATCATGATGAGTTAACAACTGAAAGACAAGTCGATTCATCTGCCCGATGGGTTGATCCATTGCTTAATACGTACAGTGATTATGAAGACAGCATTTATGGTAAAGAGGGCTCACATGGAGTTCTCGTGAACCATGGATCTTTGCATCATTATCCTATGATGGCAGGGTTGTTGTAGAATCAGTTAAGCCTTTCATCTCCAAAAAATAAAGTTCAGCACCAATTGCCATGTTGCCATCATTTGTCATGTCATCTTCTTGTGTATGTCAGTAATTTCCTGCCTCTCGGGTCTTGAGATAAATAGATCTGAAAGACCCTAATATTTATTCCATCATGTCACCGTTGCTGGGTTTGACGAGGCTGAACAGGTTTAATGTTACATGTGCATTACATCTTTGACGAGAAAGCATTGATAGCTCAGAAATCAACATTTTTGGTTTTATCTTTTTTATCTTTCAACGTTGAATGGTTTTAGGCTGGATTATGTGCAAGTTTATTCTTTGATTAGACATCCATGCTATGTAATTCGTGGAGTCGTTGTATATCTATGGAACTACAAGTTCATACAAGTTCTTTCTTTGTATCTCGAGTTTGTCCTCTAATATGTCTTCGTGGAAAGGTAATAAATCTACTGTAATTGGGAAACAGAAAGTTGCTATATGAAATTGGCTGAGTGTCGTTATAGC

>Glyma.04g018500.3 sequence-type=transcript locus=Glyma.04g018500 ID=Glyma.04g018500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGCAACGGCGTTGCCATTTTCCGTGTTTAACTCTGCTCTCTCAGGGCAGTGTGTGGATTGAGGTGTCGCACGGTGGGTGTAGCAGTAGATTCCGCCTCCAAGAAAAGAAAGAGCAATGCAAGCTGCATCTTCAGGCATCGGATACGGTCTAAAATATCAGGCTAGATGCATATCCGATGTGAAGGCAGACACAGATCACACTAGCTTCCTCGCTGGCACTCTCAGCCTCAAAGAAGAAAATGAGGTACATCTGATTCGGCTTTCGTCGAGTGGAACCGAACTCTTCTGCGAGGGATTGTTCTCTCATCCCAACGAGATCTGGGACCTTGTTTCTTGCCCCTTTGATCAACGGATCTTTTCAACCGTCTACTCTAACGGTGAAACGTATGGGGCAGCAATATGGCAGATCCCCGAGCTATATGGCGAGTTAAATTCACCTCAGCTAGAGAGAATTACCTCCCTCGACACTGATTCTGGCAAGATTAAATGTATTCTATGGTGGCCATCTGGAAGGCATGATAAATTGATCAGCATCAATGAGGAAAACCTGTACTTGTGGAATTTAGATGTTTCAAAGAAAACTGCTCAGGTACAATCACAAGATTCAGCTGGTATGCTGCACAAGTTATCTGGAGGGGCATGGGATCCACATGATGTGAGTTCTGTTGCTGCAACTTGTGAATCGTATCTCCAATTTTGGGATGTCAGAACAATGAAGAAGACTATGTCAATCGAGTGTTCCCATGTATGCAGTGTTGATTACCATCCCCAAAAGCAGCACATACTTGTTACTGCAGAACATGAGTCTGGGATACACATTTGGGATCTAAGAAAACCTAAAGTTCCCATCCAAGAGCTTCCAGGACATACTCATTGGACTTGGACTGTCAAGTGTAACCCAGAGTATGATGGAATGATCTTGGTtctctctctctctctctctctctctctctTTCACACACACACAGGGATGTAGATCCTCTTAAGTGAGTTTGTTTCTAAAGCAAAGGGTGTATTGATCCTTGATTTATTTTAAAGTGGATGGTGAGCTTATCCAACTAAAATTTGAGGGTGGATTCACCCTTAATTGCTTACTTTAGATATAAACTTGCTTTAGAGAAGCTTTTTCCCACACCCACATGTGCACACATACAAACATGCATTTTTAATGACTTCTAAATCTCTTGCTGGTGTCCATTTGTTGGTCAAAGGTTGTCTGCATACTAAATTATCATGTAGGGGATATTTAGTTATTTTTCATGGAATGTGGATGTTACAGAGTGCTGGTACGGATTCAACTGTCAACTTGTGGCTTGCCTCAACAAATCATGATGAGTTAACAACTGAAAGGTCATCTTATTATCTTAAGATATTACTATATTACATTTTATTTTAGGACTACTTTTTATTCATCTATGCTTACTTTTTAGCAGACAAGTCGATTCATCTGCCCGATGGGTTGATCCATTGCTTAATACGTACAGTGATTATGAAGACAGCATTTATGGTAAAGAGGTTCAAGTTTTTCAATCCATCTTTAGTTTTGTTTAGCTTTTGCTTCTTTTGCCAACTTTGACATGGTTTTAAGCTCTAACATACATACAAAACATCATTTCAAACACACACACAAACTTTTCTTCACAAATATTTTATTCATGTTACAGGGCTCACATGGAGTTCTCGTGAACCATGGATCTTTGCATCATTATCCTATGATGGCAGGGTAAGACTACAAGTAAATCTTTAGGCTAATTCTCAATGGTAGATGATAAATTCTCTTAATG
Coding sequences of Glyma.04g018500
>Glyma.04g018500.1 sequence-type=CDS polypeptide=Glyma.04g018500.1.p locus=Glyma.04g018500 ID=Glyma.04g018500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAAGCTGCATCTTCAGGCATCGGATACGGTCTAAAATATCAGGCTAGATGCATATCCGATGTGAAGGCAGACACAGATCACACTAGCTTCCTCGCTGGCACTCTCAGCCTCAAAGAAGAAAATGAGGTACATCTGATTCGGCTTTCGTCGAGTGGAACCGAACTCTTCTGCGAGGGATTGTTCTCTCATCCCAACGAGATCTGGGACCTTGTTTCTTGCCCCTTTGATCAACGGATCTTTTCAACCGTCTACTCTAACGGTGAAACGTATGGGGCAGCAATATGGCAGATCCCCGAGCTATATGGCGAGTTAAATTCACCTCAGCTAGAGAGAATTACCTCCCTCGACACTGATTCTGGCAAGATTAAATGTATTCTATGGTGGCCATCTGGAAGGCATGATAAATTGATCAGCATCAATGAGGAAAACCTGTACTTGTGGAATTTAGATGTTTCAAAGAAAACTGCTCAGGTACAATCACAAGATTCAGCTGGTATGCTGCACAAGTTATCTGGAGGGGCATGGGATCCACATGATGTGAGTTCTGTTGCTGCAACTTGTGAATCGTATCTCCAATTTTGGGATGTCAGAACAATGAAGAAGACTATGTCAATCGAGTGTTCCCATGTATGCAGTGTTGATTACCATCCCCAAAAGCAGCACATACTTGTTACTGCAGAACATGAGTCTGGGATACACATTTGGGATCTAAGAAAACCTAAAGTTCCCATCCAAGAGCTTCCAGGACATACTCATTGGACTTGGACTGTCAAGTGTAACCCAGAGTATGATGGAATGATCTTGAGTGCTGGTACGGATTCAACTGTCAACTTGTGGCTTGCCTCAACAAATCATGATGAGTTAACAACTGAAAGACAAGTCGATTCATCTGCCCGATGGGTTGATCCATTGCTTAATACGTACAGTGATTATGAAGACAGCATTTATGGGCTCACATGGAGTTCTCGTGAACCATGGATCTTTGCATCATTATCCTATGATGGCAGGGTTGTTGTAGAATCAGTTAAGCCTTTCATCTCCAAAAAATAA

>Glyma.04g018500.2 sequence-type=CDS polypeptide=Glyma.04g018500.2.p locus=Glyma.04g018500 ID=Glyma.04g018500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAAGCTGCATCTTCAGGCATCGGATACGGTCTAAAATATCAGGCTAGATGCATATCCGATGTGAAGGCAGACACAGATCACACTAGCTTCCTCGCTGGCACTCTCAGCCTCAAAGAAGAAAATGAGGTACATCTGATTCGGCTTTCGTCGAGTGGAACCGAACTCTTCTGCGAGGGATTGTTCTCTCATCCCAACGAGATCTGGGACCTTGTTTCTTGCCCCTTTGATCAACGGATCTTTTCAACCGTCTACTCTAACGGTGAAACGTATGGGGCAGCAATATGGCAGATCCCCGAGCTATATGGCGAGTTAAATTCACCTCAGCTAGAGAGAATTACCTCCCTCGACACTGATTCTGGCAAGATTAAATGTATTCTATGGTGGCCATCTGGAAGGCATGATAAATTGATCAGCATCAATGAGGAAAACCTGTACTTGTGGAATTTAGATGTTTCAAAGAAAACTGCTCAGGTACAATCACAAGATTCAGCTGGTATGCTGCACAAGTTATCTGGAGGGGCATGGGATCCACATGATGTGAGTTCTGTTGCTGCAACTTGTGAATCGTATCTCCAATTTTGGGATGTCAGAACAATGAAGAAGACTATGTCAATCGAGTGTTCCCATGTATGCAGTGTTGATTACCATCCCCAAAAGCAGCACATACTTGTTACTGCAGAACATGAGTCTGGGATACACATTTGGGATCTAAGAAAACCTAAAGTTCCCATCCAAGAGCTTCCAGGACATACTCATTGGACTTGGACTGTCAAGTGTAACCCAGAGTATGATGGAATGATCTTGAGTGCTGGTACGGATTCAACTGTCAACTTGTGGCTTGCCTCAACAAATCATGATGAGTTAACAACTGAAAGACAAGTCGATTCATCTGCCCGATGGGTTGATCCATTGCTTAATACGTACAGTGATTATGAAGACAGCATTTATGGTAAAGAGGGCTCACATGGAGTTCTCGTGAACCATGGATCTTTGCATCATTATCCTATGATGGCAGGGTTGTTGTAG

>Glyma.04g018500.3 sequence-type=CDS polypeptide=Glyma.04g018500.3.p locus=Glyma.04g018500 ID=Glyma.04g018500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAAGCTGCATCTTCAGGCATCGGATACGGTCTAAAATATCAGGCTAGATGCATATCCGATGTGAAGGCAGACACAGATCACACTAGCTTCCTCGCTGGCACTCTCAGCCTCAAAGAAGAAAATGAGGTACATCTGATTCGGCTTTCGTCGAGTGGAACCGAACTCTTCTGCGAGGGATTGTTCTCTCATCCCAACGAGATCTGGGACCTTGTTTCTTGCCCCTTTGATCAACGGATCTTTTCAACCGTCTACTCTAACGGTGAAACGTATGGGGCAGCAATATGGCAGATCCCCGAGCTATATGGCGAGTTAAATTCACCTCAGCTAGAGAGAATTACCTCCCTCGACACTGATTCTGGCAAGATTAAATGTATTCTATGGTGGCCATCTGGAAGGCATGATAAATTGATCAGCATCAATGAGGAAAACCTGTACTTGTGGAATTTAGATGTTTCAAAGAAAACTGCTCAGGTACAATCACAAGATTCAGCTGGTATGCTGCACAAGTTATCTGGAGGGGCATGGGATCCACATGATGTGAGTTCTGTTGCTGCAACTTGTGAATCGTATCTCCAATTTTGGGATGTCAGAACAATGAAGAAGACTATGTCAATCGAGTGTTCCCATGTATGCAGTGTTGATTACCATCCCCAAAAGCAGCACATACTTGTTACTGCAGAACATGAGTCTGGGATACACATTTGGGATCTAAGAAAACCTAAAGTTCCCATCCAAGAGCTTCCAGGACATACTCATTGGACTTGGACTGTCAAGTGTAACCCAGAGTATGATGGAATGATCTTGGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCACACACACACAGGGATGTAG
Predicted protein sequences of Glyma.04g018500
>Glyma.04g018500.1.p sequence-type=predicted peptide transcript=Glyma.04g018500.1 locus=Glyma.04g018500 ID=Glyma.04g018500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQAASSGIGYGLKYQARCISDVKADTDHTSFLAGTLSLKEENEVHLIRLSSSGTELFCEGLFSHPNEIWDLVSCPFDQRIFSTVYSNGETYGAAIWQIPELYGELNSPQLERITSLDTDSGKIKCILWWPSGRHDKLISINEENLYLWNLDVSKKTAQVQSQDSAGMLHKLSGGAWDPHDVSSVAATCESYLQFWDVRTMKKTMSIECSHVCSVDYHPQKQHILVTAEHESGIHIWDLRKPKVPIQELPGHTHWTWTVKCNPEYDGMILSAGTDSTVNLWLASTNHDELTTERQVDSSARWVDPLLNTYSDYEDSIYGLTWSSREPWIFASLSYDGRVVVESVKPFISKK*

>Glyma.04g018500.2.p sequence-type=predicted peptide transcript=Glyma.04g018500.2 locus=Glyma.04g018500 ID=Glyma.04g018500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQAASSGIGYGLKYQARCISDVKADTDHTSFLAGTLSLKEENEVHLIRLSSSGTELFCEGLFSHPNEIWDLVSCPFDQRIFSTVYSNGETYGAAIWQIPELYGELNSPQLERITSLDTDSGKIKCILWWPSGRHDKLISINEENLYLWNLDVSKKTAQVQSQDSAGMLHKLSGGAWDPHDVSSVAATCESYLQFWDVRTMKKTMSIECSHVCSVDYHPQKQHILVTAEHESGIHIWDLRKPKVPIQELPGHTHWTWTVKCNPEYDGMILSAGTDSTVNLWLASTNHDELTTERQVDSSARWVDPLLNTYSDYEDSIYGKEGSHGVLVNHGSLHHYPMMAGLL*

>Glyma.04g018500.3.p sequence-type=predicted peptide transcript=Glyma.04g018500.3 locus=Glyma.04g018500 ID=Glyma.04g018500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQAASSGIGYGLKYQARCISDVKADTDHTSFLAGTLSLKEENEVHLIRLSSSGTELFCEGLFSHPNEIWDLVSCPFDQRIFSTVYSNGETYGAAIWQIPELYGELNSPQLERITSLDTDSGKIKCILWWPSGRHDKLISINEENLYLWNLDVSKKTAQVQSQDSAGMLHKLSGGAWDPHDVSSVAATCESYLQFWDVRTMKKTMSIECSHVCSVDYHPQKQHILVTAEHESGIHIWDLRKPKVPIQELPGHTHWTWTVKCNPEYDGMILVLSLSLSLSLFHTHTGM*






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