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Report for Sequence Feature Glyma.04g042600

Feature Type:gene_model
Chromosome:Gm04
Start:3433939
stop:3437482
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g042600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G78830.1AT Curculin-like (mannose-binding) lectin family protein JGI N/AIEA
GO:0006468GO-bp protein phosphorylation EnsemblGenomesN/AIEA
GO:0005886GO-cc plasma membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0004674GO-mf protein serine/threonine kinase activity EnsemblGenomesN/AIEA
PTHR24420Panther LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE JGI N/AIEA
PTHR24420:SF599Panther LEUCINE-RICH RECEPTOR-LIKE PROTEIN KINASE-RELATED JGI N/AIEA
PF01453PFAM D-mannose binding lectin JGI N/AIEA

Expression Patterns of Glyma.04g042600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g042600 not represented in the dataset
Glyma.04g042600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.04g042600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g04521 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g042600
>Glyma.04g042600.1 sequence-type=CDS polypeptide=Glyma.04g042600.1.p locus=Glyma.04g042600 ID=Glyma.04g042600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCATGCTCTCATAAAAAAAATGGCATGTTCTCTGCTGGCTTCTATGCCGTTGGCCAAAACGCATATTCCTTTGCCGTTTGGTTCTCCGAACCCTACGGCCAAACTCGAAACGCAACCGTTGTATGGATGGCGAACCGTGACCAGCCCGTGAACGGCAAGGACTCAAAGATTTCGCTACTTCGCAACGGCAATCTCGCCTTAAACGACGTTGACGAGTCCCTCGTTTGGTACACAAACACCGCTTCACTGTCCTCCTCTGTGCGTCTATTTTTCGACAACACCGGCAACCTCCTTTTGCATGAAACGCAGGCTACTGGTGTCGTTTTGTGGCAAAGCTTTGATTTCCCTACAGATACCCTTTTACCTCAACAAGTGTTCACGAGACACTCGAAACTTGTCTCTTCTAGAAGTGAGACCAACATGTCCTCTGGTTTCTACGCCTTGTTCTTCGACAACGACAACATTTTTCGTCTTCTTTACGATGGCCCTGAAGTTTCTGGCCTTTACTGGCCAGATCCTTGCAGAGTTGCGGTCATGGACACGCTCGACAATTTTAGTTCCTCAGATGATTTACACTTTTTGACATCTGATTACGGCACTCTGATCCAAAGAAGATTGGTCCTTGATCACGATGGAAACATTCGCGTTTATAGTCAGAGACACGGGGGAGTGGGGGGACTCGAAGTTTTTTGCATATTTGTGATTTGGTTTTTTCTGGTGAGAACAAGGGGGCAAAAATATTCGGGTGTAGATGGACGAGTCTATAATCTGGCCATGAGTGGTTTTAGAAAATTCAGTTATTCTCAGCTGAAACAAGCCACCAAAGGGTTTAGTCAAGAGATAGGAAGGGATGCAGGAGGGGTTGTATACAAAGGAGTGTGTTAG
Predicted protein sequences of Glyma.04g042600
>Glyma.04g042600.1.p sequence-type=predicted peptide transcript=Glyma.04g042600.1 locus=Glyma.04g042600 ID=Glyma.04g042600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSCSHKKNGMFSAGFYAVGQNAYSFAVWFSEPYGQTRNATVVWMANRDQPVNGKDSKISLLRNGNLALNDVDESLVWYTNTASLSSSVRLFFDNTGNLLLHETQATGVVLWQSFDFPTDTLLPQQVFTRHSKLVSSRSETNMSSGFYALFFDNDNIFRLLYDGPEVSGLYWPDPCRVAVMDTLDNFSSSDDLHFLTSDYGTLIQRRLVLDHDGNIRVYSQRHGGVGGLEVFCIFVIWFFLVRTRGQKYSGVDGRVYNLAMSGFRKFSYSQLKQATKGFSQEIGRDAGGVVYKGVC*






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