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Report for Sequence Feature Glyma.04g101500

Feature Type:gene_model
Chromosome:Gm04
Start:9337214
stop:9341731
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g101500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G08920.1AT cryptochrome 1 JGI N/AIEA
GO:0006281GO-bp DNA repair JGI N/AIEA
GO:0009785GO-bp blue light signaling pathway EnsemblGenomesN/AIEA
GO:0003913GO-mf DNA photolyase activity JGI N/AIEA
GO:0009882GO-mf blue light photoreceptor activity EnsemblGenomesN/AIEA
KOG0133 KOG Deoxyribodipyrimidine photolyase/cryptochrome JGI N/AIEA
PTHR11455Panther CRYPTOCHROME JGI N/AIEA
PF00875PFAM DNA photolyase JGI N/AIEA
PF03441PFAM FAD binding domain of DNA photolyase JGI N/AIEA
PF12546PFAM Blue/Ultraviolet sensing protein C terminal JGI N/AIEA

Proteins Associated with Glyma.04g101500
LocusGene SymbolProtein Name
CRY1a Cryptochrome 1a

Expression Patterns of Glyma.04g101500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g101500
ParalogEvidenceComments
Glyma.06g103200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g101500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g11010 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g101500
>Glyma.04g101500.1 sequence-type=CDS polypeptide=Glyma.04g101500.1.p locus=Glyma.04g101500 ID=Glyma.04g101500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCAGGTGGTGGAGGCAGCATAGTGTGGTTCAGAAGAGATCTGAGGATAGAAGACAATCCAGCACTGACAGCAGGAGTGAGAGCTGGTGCTGTGGTTGCAGTTTTCGTATGGGCACCTGAAGAAGAAGGTCAATACTACCCTGGCAGGGTCTCTAGATGGTGGCTCAAGAACAGTTTGGCTCATCTTCATTCCTCTCTGAGGAATCTTGGCACTCCTCTCATCACTAAGCGATCCACTGACACTCTTTCTTCTCTTCTTGAGGTTGTTAAGTCCACTGGAGCCACTCAACTTTTTTTTAATCATTTGTATGATCCCCTGTCACTTGTCAGGGATCACCGAGCAAAGGAGGTTCTGACTGCTCAGGGCATAACAGTACGTTCCTTCAATGCGGATTTATTATATGAACCATGGGAAGTGAATGATGCACATGGCCGACCATTCACAACTTTTGCTGCTTTTTGGGAAAGATGCCTTAGCATGCCTTATGACCCTGAGTCACCTCTTCTCCCACCTAAAAGGATAATTCCAGGTGATGCATCCAGGTGTCCTAGTGATACATTGCTGTTTGAAGATGAATTAGAGAAGGCAAGCAATGCACTTCTTGCTCGAGCATGGTCACCTGGGTGGAGCAATGCTAACAAGGCATTGACAACCTTCATAAATGGTCCACTGATTGAGTACTCAAAAAACCGCAGGAAAGCAGACAGTGCAACTACCTCACTTCTGTCCCCCCATTTGCACTTTGGTGAGTTGAGTGTTAAGAAGGTCTTCCATCTTGTCCGCATCAAACAAGTTTTGTGGGCCAACGAAGGAAACAAAGCCGGCGAAGAGAGCGTGAACTTGTTCCTCAAATCTATAGGTCTTAGAGAATATTCAAGGTACATTAGTTTCAACCACCCCTACAGTCATGAAAGGCCTCTTCTAGGCCACCTTAAGTTCTTTCCTTGGGTTGTAAACGAAGGCTATTTTAAGGCATGGAGACAAGGCAGGACTGGGTACCCTTTAGTGGATGCTGGGATGAGGGAGTTGTGGGCCACTGGTTGGCTGCATGATCGAATACGTGTTGTAGTTTCCAGTTTCTTTGTGAAGGTTCTGCAGCTTCCATGGAGATGGGGAATGAAATATTTCTGGGACACCCTTTTGGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAGTACATATCTGGTAGTCTCCCTGATGGTCGTGAAATTGACCGAATAGATAATCCACAGTTTGAGGGATACAAATTCGACCCTAATGGAGAATATGTGCGACGCTGGCTTCCAGAACTTGCAAGATTACCAACCGAGTGGATACATCATCCTTGGAATGCACCAGAGTCAGTGCTACAAGCTGCTGGAATTGAGTTAGGATCGAACTATCCTCTTCCAATTGTGGGAATAGATGCAGCAAAAACCAGATTACTAGAAGCGCTATCAGAAATGTGGCAACAAGAGGCAGCTTCAAGAGCTGCAATGGAGAATGGAACTGAGGAAGGACTTGGAGACTCTTCTGAATCCGTTCCTGCTGCTTTTCCTCAAGACATGCAAATGGAGGAAACTCATGAGCCTGTTAGGAACAATCCCCTTCCTGTTGCTCGGCGCTACCAGGATCAGATGGTTCCAAGCATCACTTCTTCCTTGTTGAGAGTGGAAGAGGAAGAAACTTCTTCTGATCTTCGACACTCGGCAGAAGAGAGCAGCAGAGCTGAAGTGCCAGTAACTGCAAATGCACAACAAAATGTAGGAGTTACATTGAATGAACGGATGCTGCAGACCACTAATAGGAATGCACAAACACAATACAATACTACAATGGAGCTGAGAAATGTAGCTGAAGATTCAGCAGTAGAATCTTCAAGTGGTACCAGGAGAGAAAGGGATGGAGGTGTAGTTCCAGTATGGTCTCCCCCAGCTTCTAGTTACTCAGAACAATTTGTAGGAGAGGAAAATGGTATAACAAACAGTTCATCTTTCTTGCAAAGGCATCCTCAGTCTCACCAAATGCTGAATTGGAGGCAGCTACCTCAGACTGGGTAA
Predicted protein sequences of Glyma.04g101500
>Glyma.04g101500.1.p sequence-type=predicted peptide transcript=Glyma.04g101500.1 locus=Glyma.04g101500 ID=Glyma.04g101500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSGGGGSIVWFRRDLRIEDNPALTAGVRAGAVVAVFVWAPEEEGQYYPGRVSRWWLKNSLAHLHSSLRNLGTPLITKRSTDTLSSLLEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQGITVRSFNADLLYEPWEVNDAHGRPFTTFAAFWERCLSMPYDPESPLLPPKRIIPGDASRCPSDTLLFEDELEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTSLLSPHLHFGELSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGREIDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKTRLLEALSEMWQQEAASRAAMENGTEEGLGDSSESVPAAFPQDMQMEETHEPVRNNPLPVARRYQDQMVPSITSSLLRVEEEETSSDLRHSAEESSRAEVPVTANAQQNVGVTLNERMLQTTNRNAQTQYNTTMELRNVAEDSAVESSSGTRRERDGGVVPVWSPPASSYSEQFVGEENGITNSSSFLQRHPQSHQMLNWRQLPQTG*






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