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Report for Sequence Feature Glyma.05g223400

Feature Type:gene_model
Chromosome:Gm05
Start:40273312
stop:40274992
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g223400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G26220.1AT S-adenosyl-L-methionine-dependent methyltransferases superfamily protein JGI N/AIEA
GO:0032259GO-bp methylation EnsemblGenomesN/AIEA
GO:0008168GO-mf methyltransferase activity EnsemblGenomesN/AIEA
GO:0008171GO-mf O-methyltransferase activity EnsemblGenomesN/AIEA
GO:0008171GO-mf O-methyltransferase activity JGI N/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
KOG1663 KOG O-methyltransferase JGI N/AIEA
PTHR10509Panther O-METHYLTRANSFERASE-RELATED JGI N/AIEA
PF01596PFAM O-methyltransferase JGI N/AIEA
PWY-1121SoyCyc9 suberin monomers biosynthesis Plant Metabolic Network ISS
PWY-361SoyCyc9 phenylpropanoid biosynthesis Plant Metabolic Network ISS
PWY-6039SoyCyc9 chlorogenic acid biosynthesis I Plant Metabolic Network ISS
PWY-6064SoyCyc9 methylquercetin biosynthesis Plant Metabolic Network ISS
PWY-6199SoyCyc9 quercetin sulfate biosynthesis Plant Metabolic Network ISS
PWY-6232SoyCyc9 chrysoeriol biosynthesis Plant Metabolic Network ISS
PWY-6792SoyCyc9 scopoletin biosynthesis Plant Metabolic Network ISS
PWY-7498SoyCyc9 phenylpropanoids methylation (ice plant) Plant Metabolic Network ISS
GN7V-60969SoyCyc9-rxn luteolin O-methyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.05g223400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g223400
ParalogEvidenceComments
Glyma.08g030500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g223400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g36210 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.05g223400
>Glyma.05g223400.2 sequence-type=transcript locus=Glyma.05g223400 ID=Glyma.05g223400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATATAAGAAACACACTACACACACTCCCCTCAATTGTTTGTTGAAGAGGTGAAGGAATGGAGGTTGGAGGTTGCAACGTGCAACCGCCTCTTAGCACTTCTTTTTAAATGGCCGAAGAGGAGAGGCATTGTAAGTCGAAGAGAAAAGAAGGCTTAACAAAGCACAGAATGTCCTCTAATCCAGTAATACTGCAGAGTGTGAACTTGACCAAGTATATACTGGAGACCAGCGTTTATCCACGAGAAGAAGAGACTCTCAAAGAGCTAAGGAAAGCCACTGCAGGCCACCCTTGGGGCTTTATGGGCGCTGCTCCCGATGCGGGTCAGCTAATGACCTTGCTCTTGAAGTTGTTGAATGCTAAGAAGACAATTGAAGTGGGAGTTTTTACTGGGTACTCTCTTCTCCTCACTGCACTTACCATTCCAGATGATGGAAAGATTATAGCCCTGGATCCAGACAGAGAAGCTTATGAGATAGGATTACCGTTCATTAAAAAGGCTGGTGTAGAGCACAAGATCGACTTCATAGAGTCTCCAGCTCTACCGGTTCTTGATAAACTCTTAGAAGATCCTTCAAATAAGGAAAGTTTTGACTTTGCCTTCGTTGATGCCGATAAAGATAACTATTGGAATTACCACGAGAGGCTTCTTAAACTGGTGATGGCTTCACTATCTGCAGGCGTGCTCATTGAACATCATCTGCCAATGTTGTATTAAGATTCAAGTTAATTTCATGTACTATGTTTTCGTGTTTTATTTTTCTCTCTTTTGGGAGTGGGGGGTTTACTAAATTTACGTGATAACTTGTGGTATAATTTGATTTACCTCCGACTCTGGGGCCTATGCCCTATGGTGTGACTCTAATGTGAAACTGGGCGTGTCGCTATTTATTTACTAGTACTAAATAAAATAAAATGTTGTGTC
Coding sequences of Glyma.05g223400
>Glyma.05g223400.1 sequence-type=CDS polypeptide=Glyma.05g223400.1.p locus=Glyma.05g223400 ID=Glyma.05g223400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCGAAGAGGAGAGGCATTGTAAGTCGAAGAGAAAAGAAGGCTTAACAAAGCACAGAATGTCCTCTAATCCAGTAATACTGCAGAGTGTGAACTTGACCAAGTATATACTGGAGACCAGCGTTTATCCACGAGAAGAAGAGACTCTCAAAGAGCTAAGGAAAGCCACTGCAGGCCACCCTTGGGGCTTTATGGGCGCTGCTCCCGATGCGGGTCAGCTAATGACCTTGCTCTTGAAGTTGTTGAATGCTAAGAAGACAATTGAAGTGGGAGTTTTTACTGGGTACTCTCTTCTCCTCACTGCACTTACCATTCCAGATGATGGAAAGATTATAGCCCTGGATCCAGACAGAGAAGCTTATGAGATAGGATTACCGTTCATTAAAAAGGCTGGTGTAGAGCACAAGATCGACTTCATAGAGTCTCCAGCTCTACCGGTTCTTGATAAACTCTTAGAAGATCCTTCAAATAAGGAAAGTTTTGACTTTGCCTTCGTTGATGCCGATAAAGATAACTATTGGAATTACCACGAGAGGCTTCTTAAACTGGTAAAGATTGGTGGGTTAATCATCTATGATAACACTCTCTGGGGTGGAACTGTTGCCTGGCCTGAAGAGGATGTTCCTGTACCAAAAAGGAAATTCAGGCAGGCTACACTGGCTTTCAACAAAGCAATTGCTGATGATTCTCGTGTTGAAATTTCTGTTGTTTCAATAGGTGATGGCTTCACTATCTGCAGGCGTGCTCATTGA

>Glyma.05g223400.2 sequence-type=CDS polypeptide=Glyma.05g223400.2.p locus=Glyma.05g223400 ID=Glyma.05g223400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCGAAGAGGAGAGGCATTGTAAGTCGAAGAGAAAAGAAGGCTTAACAAAGCACAGAATGTCCTCTAATCCAGTAATACTGCAGAGTGTGAACTTGACCAAGTATATACTGGAGACCAGCGTTTATCCACGAGAAGAAGAGACTCTCAAAGAGCTAAGGAAAGCCACTGCAGGCCACCCTTGGGGCTTTATGGGCGCTGCTCCCGATGCGGGTCAGCTAATGACCTTGCTCTTGAAGTTGTTGAATGCTAAGAAGACAATTGAAGTGGGAGTTTTTACTGGGTACTCTCTTCTCCTCACTGCACTTACCATTCCAGATGATGGAAAGATTATAGCCCTGGATCCAGACAGAGAAGCTTATGAGATAGGATTACCGTTCATTAAAAAGGCTGGTGTAGAGCACAAGATCGACTTCATAGAGTCTCCAGCTCTACCGGTTCTTGATAAACTCTTAGAAGATCCTTCAAATAAGGAAAGTTTTGACTTTGCCTTCGTTGATGCCGATAAAGATAACTATTGGAATTACCACGAGAGGCTTCTTAAACTGGTGATGGCTTCACTATCTGCAGGCGTGCTCATTGAACATCATCTGCCAATGTTGTATTAA
Predicted protein sequences of Glyma.05g223400
>Glyma.05g223400.1.p sequence-type=predicted peptide transcript=Glyma.05g223400.1 locus=Glyma.05g223400 ID=Glyma.05g223400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAEEERHCKSKRKEGLTKHRMSSNPVILQSVNLTKYILETSVYPREEETLKELRKATAGHPWGFMGAAPDAGQLMTLLLKLLNAKKTIEVGVFTGYSLLLTALTIPDDGKIIALDPDREAYEIGLPFIKKAGVEHKIDFIESPALPVLDKLLEDPSNKESFDFAFVDADKDNYWNYHERLLKLVKIGGLIIYDNTLWGGTVAWPEEDVPVPKRKFRQATLAFNKAIADDSRVEISVVSIGDGFTICRRAH*

>Glyma.05g223400.2.p sequence-type=predicted peptide transcript=Glyma.05g223400.2 locus=Glyma.05g223400 ID=Glyma.05g223400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAEEERHCKSKRKEGLTKHRMSSNPVILQSVNLTKYILETSVYPREEETLKELRKATAGHPWGFMGAAPDAGQLMTLLLKLLNAKKTIEVGVFTGYSLLLTALTIPDDGKIIALDPDREAYEIGLPFIKKAGVEHKIDFIESPALPVLDKLLEDPSNKESFDFAFVDADKDNYWNYHERLLKLVMASLSAGVLIEHHLPMLY*






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