Report for Sequence Feature Glyma.06g050300
Feature Type: gene_model
Chromosome: Gm06
Start: 3823010
stop: 3824607
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.06g050300
Expression Patterns of Glyma.06g050300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.06g050300
Paralog Evidence Comments
Glyma.04g050300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.06g050300 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma06g05300 Wm82.a1.v1.1 IGC As supplied by JGI
Coding sequences of Glyma.06g050300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.06g050300.1 sequence-type=CDS polypeptide=Glyma.06g050300.1.p locus=Glyma.06g050300 ID=Glyma.06g050300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATCCCAAACGTTGAAATCCCTCACTGGGACGCCGACGGAGGAGGACCACTCTCTCCGTTCATCTCTTCTTCTTCCAATGCTGACAAGTGCTCATTATTATTCTCCTCCGACCATTTCCGAATGTTCCAGTTCAAGGTCCGGATCTGTCCACGTGGCAGGTCCCACGATTGGACGGAGTGTCCCTACGCCCACCCTGCCGAGAAGGCTCGCCGCCGTGACCCCCGCAAGTACCACTACTCCGGCACCGCCTGCCCCGATTACCAGAAGGGGAACTGCAAGAGGGGCGACACTTGTCAGTTCTCGCACGGCGTCTTCGAATGCTGGCTCCATCCTTCTCGCTACCGGACCCACCTCTGCAAAGACGGAACCACTTGCCGCCGCAGAGTCTGCTTCTTCGCTCACACCACCGAACAACTCCGCCTCGTAGTAACGGATTCATCATCGTCCTCCTTTGTTTCCTCTCCCACTTCGGTCCTCAACTCTTCGTCCTTCTCCGATTCTTCGCCGTACAGCTTCGTGCGCGAAATAGTTAACTCAACGCGGAATGTTAAAATCGAGGATTCGGGTTTGACCCGTTGCGTGTTTGGGTCGCCACGTGGCGGGTTTTTAAGTGTGAATGGGTGCGAGGAGGAGCCTGCTATGGAGAGGGTGGAATCTGGGAAAGACATTAGAGCGAGAATCTATGCCAAGCTTAGTAGGGAGAACACGATTGGAGCCTCTGACCCTGACATTGGATGGGTTTCGGAACTCGTCAAATGA
Predicted protein sequences of Glyma.06g050300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.06g050300.1.p sequence-type=predicted peptide transcript=Glyma.06g050300.1 locus=Glyma.06g050300 ID=Glyma.06g050300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIPNVEIPHWDADGGGPLSPFISSSSNADKCSLLFSSDHFRMFQFKVRICPRGRSHDWTECPYAHPAEKARRRDPRKYHYSGTACPDYQKGNCKRGDTCQFSHGVFECWLHPSRYRTHLCKDGTTCRRRVCFFAHTTEQLRLVVTDSSSSSFVSSPTSVLNSSSFSDSSPYSFVREIVNSTRNVKIEDSGLTRCVFGSPRGGFLSVNGCEEEPAMERVESGKDIRARIYAKLSRENTIGASDPDIGWVSELVK*