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Report for Sequence Feature Glyma.08g025500

Feature Type:gene_model
Chromosome:Gm08
Start:2015764
stop:2019474
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g025500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G23920.1AT beta-amylase 1 JGI N/AIEA
GO:0000272GO-bp polysaccharide catabolic process EnsemblGenomesN/AIEA
GO:0000272GO-bp polysaccharide catabolic process JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0016161GO-mf beta-amylase activity EnsemblGenomesN/AIEA
GO:0016161GO-mf beta-amylase activity JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016798GO-mf hydrolase activity, acting on glycosyl bonds EnsemblGenomesN/AIEA
GO:0102229GO-mf amylopectin maltohydrolase activity EnsemblGenomesN/AIEA
PF01373PFAM Glycosyl hydrolase family 14 JGI N/AIEA
GN7V-63372SoyCyc9-rxn β-amylase Plant Metabolic Network ISS

Proteins Associated with Glyma.08g025500
LocusGene SymbolProtein Name
BMY1-3 Beta-amylase 1 gene 3

Expression Patterns of Glyma.08g025500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g025500
ParalogEvidenceComments
Glyma.05g219200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g025500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g02920 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.08g025500
>Glyma.08g025500.2 sequence-type=transcript locus=Glyma.08g025500 ID=Glyma.08g025500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTGAAAAATGGCATATAATCTCTCCTCCACAAGCACATCCTGGGCGAGAAGTACAGTGTTGTATGCAATTGCATTCctcacctcactctcattctcacacactgtgctccctctcTTCTCTTCTATTTTTATGTAATACACACTCTCTCAAACCCTAACTCTCCAATCAATGGCCATCCTGTCCCAATCCACCGCCAGCTTCTCCTTCGTCTCCACTCGGACCGATTCCACTCACCTAACTCGCTTCCCCTGCCGCGTCACCTTCCGAGCCCGCTCTCCCCCTCTCCGCCCCGCCCTCGTCTCTTCGCGCCTCAACTCCTCCAGGTCCCCCGACGCCGGCGGCTCCCTCTCGCCGGACAACGGCGGCGGCGACGTCGCCTACCAGCTCCACCACGACTTCTCTCCGCAGCGCCGTCGCCGCGGCTCGCCGGTCTTCGTCACGCTGCCGGTGAATTCCATCGGTCGGGATGGCCGTGTCGCGAGGCCCAAGGCGATGATGTTCTCGCTTAAGGCGCTTGCCACGGCCGGCGTGGAAGGCGTGGTTATTGAAATTTGGTGGGGATTGGTTGAGAAGAAGAAACCTAGGGTTTACGATTGGAGAGGGTATGAGGAACTCGTCGCGATGGCGTGCAAGTGTGGCCTTAAGGTTCGGGCGGTTCTCGCCTTTCATCAGCATGGCACGGGACCTGATGATCCCAATTGGATGCCACTTCCTCTATGGGTGCTTGATGAGATACAGAAAGATACAGAGTTAGCGTATTGTGACAGGTTTGGACAAAGAAATATTGAATACATTTCCCTTGGATGTGATATTCTGCCTGTGTTATGTGGGCGTTCTCCTATTCAAGCATATGCAGATTTTATGAGGAATTTTAGGGACACTTTTGAGTCTTTGCTTGGCGTTGTCATCACAGGTGTACAGATTGGCATGGGTCCTGGTGGTGAACTAAGATATCCTTCATTCTCTTCACAGGAGCCAAATTTGGCTTGGTCTCATGAACTTGGAGAGTTTCAGTGCTATGATAAGTATATGCTTGCTTCTCTGAATGCCTCTGCAAGAAATATTGGAAAGCGTGAATGGGGAAATGGTGGTCCATTTGGTAGTGAAAGTTTGATGCAAAATCCTGAGCATACTGATTTTTTCAGAAATGACGGTGGCTCTTGGGACACACCATATGGTAAATTTTTTCTTGAATGGTACTCAGATATGCTGCTGCTGCATGGGGAGAGGATTTGTAGGGAAGCTGAAACTATATTTAGGGGTACAGAAGTCCATATATCAGCAAAATTGGCTGCCATTCACTGGCATTATGCCATGCAATCCCACCCATCAGAGTTAACAGCTGGCTATTATAATACTTCTAACAGGGACGGATACTTACCCATTGCTCGTATGTTTAGCAAGTATGGATTCTCAATGTGCTGCTCTTGTTTTGAAATGCAAGATGCTGTAACGCAGAAGATCAATCCAGATGGTAGTCCTGAAGGTTTTCTTAGACAGCTTTTGCTGGTTGCTAGGCTCTGTGATATATCACTCGAAGGTCAAAATTTTTCAACTAATTTGGATGATGGTGCATTCACCCAGGTGCTTAAGATGTCAAAATTTTACTCAGATGGGATTGAGAAGCGACCTTTCTCATTCAACTTTGTAAGAATGGACAAAAGATTGTTTGAATCCCGAAATTGGGATCGGTTTACTCGTTTTGTGAGACAATTGTCTAATGGAAACATTTTTCGAGCCAGATTAAATTCTGTTCGTGAAGTACGGTTGAAGACCACACCAGTGGTAGCAGCAGTGGGACTGTTGTACCACCTATATCAGCACTCTTGAAACTAGTCTTGCCCTTTGTTCTTTAGGCATATATAGTATTTCTGCGACCGATGCAAGAAAGTATGATGACCTCCGGTCTAATGTTGTGAAATGTGTAGTAACTGCTGATTCTTCAAATTATTCTTTTATTGCTTTTCAGCAAGAAGTTACTTCCCCCAGCACAACATAGGCAATTTTGGATTTGATGCCTCCTGTGCTGGGGGTTGCGCTGGGTTGGAGGCCAATGAGACTTATTGGTTTACCATTGGCGTTAATAAGGGATTTGTCCAATATGATGAATACTATTTTACTTGAGTTTTGAATGATGTGGTGTATGAGACAAGTTGTTTCTAGGTTTGGTGAGTACCAAATAATCTGATTTTTTGGCTTGTATTTTATTATTGTATAGTTTTGTTTTATGTACTTATAAAATCATAATGTACAACAAGAATTTATATGTCGTCGAATCTTTTAATTTTGAAGGAAATAAAATTGCATAATGCGACAAATTTGTAAAAGCTAAGCCCACAGATTTAGCACATCGTA
Coding sequences of Glyma.08g025500
>Glyma.08g025500.1 sequence-type=CDS polypeptide=Glyma.08g025500.1.p locus=Glyma.08g025500 ID=Glyma.08g025500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCATCCTGTCCCAATCCACCGCCAGCTTCTCCTTCGTCTCCACTCGGACCGATTCCACTCACCTAACTCGCTTCCCCTGCCGCGTCACCTTCCGAGCCCGCTCTCCCCCTCTCCGCCCCGCCCTCGTCTCTTCGCGCCTCAACTCCTCCAGGTCCCCCGACGCCGGCGGCTCCCTCTCGCCGGACAACGGCGGCGGCGACGTCGCCTACCAGCTCCACCACGACTTCTCTCCGCAGCGCCGTCGCCGCGGCTCGCCGGTCTTCGTCACGCTGCCGGTGAATTCCATCGGTCGGGATGGCCGTGTCGCGAGGCCCAAGGCGATGATGTTCTCGCTTAAGGCGCTTGCCACGGCCGGCGTGGAAGGCGTGGTTATTGAAATTTGGTGGGGATTGGTTGAGAAGAAGAAACCTAGGGTTTACGATTGGAGAGGGTATGAGGAACTCGTCGCGATGGCGTGCAAGTGTGGCCTTAAGGTTCGGGCGGTTCTCGCCTTTCATCAGCATGGCACGGGACCTGATGATCCCAATTGGATGCCACTTCCTCTATGGGTGCTTGATGAGATACAGAAAGATACAGAGTTAGCGTATTGTGACAGGTTTGGACAAAGAAATATTGAATACATTTCCCTTGGATGTGATATTCTGCCTGTGTTATGTGGGCGTTCTCCTATTCAAGCATATGCAGATTTTATGAGGAATTTTAGGGACACTTTTGAGTCTTTGCTTGGCGTTGTCATCACAGGTGTACAGATTGGCATGGGTCCTGGTGGTGAACTAAGATATCCTTCATTCTCTTCACAGGAGCCAAATTTGGCTTGGTCTCATGAACTTGGAGAGTTTCAGTGCTATGATAAGTATATGCTTGCTTCTCTGAATGCCTCTGCAAGAAATATTGGAAAGCGTGAATGGGGAAATGGTGGTCCATTTGGTAGTGAAAGTTTGATGCAAAATCCTGAGCATACTGATTTTTTCAGAAATGACGGTGGCTCTTGGGACACACCATATGGTAAATTTTTTCTTGAATGGTACTCAGATATGCTGCTGCTGCATGGGGAGAGGATTTGTAGGGAAGCTGAAACTATATTTAGGGGTACAGAAGTCCATATATCAGCAAAATTGGCTGCCATTCACTGGCATTATGCCATGCAATCCCACCCATCAGAGTTAACAGCTGGCTATTATAATACTTCTAACAGGGACGGATACTTACCCATTGCTCGTATGTTTAGCAAGTATGGATTCTCAATGTGCTGCTCTTGTTTTGAAATGCAAGATGCTGTAACGCAGAAGATCAATCCAGATGGTAGTCCTGAAGGTTTTCTTAGACAGCTTTTGCTGGTTGCTAGGCTCTGTGATATATCACTCGAAGGTCAAAATTTTTCAACTAATTTGGATGATGGTGCATTCACCCAGGTGCTTAAGATGTCAAAATTTTACTCAGATGGGATTGAGAAGCGACCTTTCTCATTCAACTTTGTAAGAATGGACAAAAGATTGTTTGAATCCCGAAATTGGGATCGGTTTACTCGTTTTGTGAGACAATTGTCTAATGGAAACATTTTTCGAGCCAGATTAAATTCTGTTCGTGAAGTACGGTTGAAGACCACACCAGTGGTAGCAGCAGTGGGACTGTTGTACCACCTATATCAGCACTCTTGA

>Glyma.08g025500.2 sequence-type=CDS polypeptide=Glyma.08g025500.2.p locus=Glyma.08g025500 ID=Glyma.08g025500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCATCCTGTCCCAATCCACCGCCAGCTTCTCCTTCGTCTCCACTCGGACCGATTCCACTCACCTAACTCGCTTCCCCTGCCGCGTCACCTTCCGAGCCCGCTCTCCCCCTCTCCGCCCCGCCCTCGTCTCTTCGCGCCTCAACTCCTCCAGGTCCCCCGACGCCGGCGGCTCCCTCTCGCCGGACAACGGCGGCGGCGACGTCGCCTACCAGCTCCACCACGACTTCTCTCCGCAGCGCCGTCGCCGCGGCTCGCCGGTCTTCGTCACGCTGCCGGTGAATTCCATCGGTCGGGATGGCCGTGTCGCGAGGCCCAAGGCGATGATGTTCTCGCTTAAGGCGCTTGCCACGGCCGGCGTGGAAGGCGTGGTTATTGAAATTTGGTGGGGATTGGTTGAGAAGAAGAAACCTAGGGTTTACGATTGGAGAGGGTATGAGGAACTCGTCGCGATGGCGTGCAAGTGTGGCCTTAAGGTTCGGGCGGTTCTCGCCTTTCATCAGCATGGCACGGGACCTGATGATCCCAATTGGATGCCACTTCCTCTATGGGTGCTTGATGAGATACAGAAAGATACAGAGTTAGCGTATTGTGACAGGTTTGGACAAAGAAATATTGAATACATTTCCCTTGGATGTGATATTCTGCCTGTGTTATGTGGGCGTTCTCCTATTCAAGCATATGCAGATTTTATGAGGAATTTTAGGGACACTTTTGAGTCTTTGCTTGGCGTTGTCATCACAGGTGTACAGATTGGCATGGGTCCTGGTGGTGAACTAAGATATCCTTCATTCTCTTCACAGGAGCCAAATTTGGCTTGGTCTCATGAACTTGGAGAGTTTCAGTGCTATGATAAGTATATGCTTGCTTCTCTGAATGCCTCTGCAAGAAATATTGGAAAGCGTGAATGGGGAAATGGTGGTCCATTTGGTAGTGAAAGTTTGATGCAAAATCCTGAGCATACTGATTTTTTCAGAAATGACGGTGGCTCTTGGGACACACCATATGGTAAATTTTTTCTTGAATGGTACTCAGATATGCTGCTGCTGCATGGGGAGAGGATTTGTAGGGAAGCTGAAACTATATTTAGGGGTACAGAAGTCCATATATCAGCAAAATTGGCTGCCATTCACTGGCATTATGCCATGCAATCCCACCCATCAGAGTTAACAGCTGGCTATTATAATACTTCTAACAGGGACGGATACTTACCCATTGCTCGTATGTTTAGCAAGTATGGATTCTCAATGTGCTGCTCTTGTTTTGAAATGCAAGATGCTGTAACGCAGAAGATCAATCCAGATGGTAGTCCTGAAGGTTTTCTTAGACAGCTTTTGCTGGTTGCTAGGCTCTGTGATATATCACTCGAAGGTCAAAATTTTTCAACTAATTTGGATGATGGTGCATTCACCCAGGTGCTTAAGATGTCAAAATTTTACTCAGATGGGATTGAGAAGCGACCTTTCTCATTCAACTTTGTAAGAATGGACAAAAGATTGTTTGAATCCCGAAATTGGGATCGGTTTACTCGTTTTGTGAGACAATTGTCTAATGGAAACATTTTTCGAGCCAGATTAAATTCTGTTCGTGAAGTACGGTTGAAGACCACACCAGTGGTAGCAGCAGTGGGACTGTTGTACCACCTATATCAGCACTCTTGA
Predicted protein sequences of Glyma.08g025500
>Glyma.08g025500.1.p sequence-type=predicted peptide transcript=Glyma.08g025500.1 locus=Glyma.08g025500 ID=Glyma.08g025500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAILSQSTASFSFVSTRTDSTHLTRFPCRVTFRARSPPLRPALVSSRLNSSRSPDAGGSLSPDNGGGDVAYQLHHDFSPQRRRRGSPVFVTLPVNSIGRDGRVARPKAMMFSLKALATAGVEGVVIEIWWGLVEKKKPRVYDWRGYEELVAMACKCGLKVRAVLAFHQHGTGPDDPNWMPLPLWVLDEIQKDTELAYCDRFGQRNIEYISLGCDILPVLCGRSPIQAYADFMRNFRDTFESLLGVVITGVQIGMGPGGELRYPSFSSQEPNLAWSHELGEFQCYDKYMLASLNASARNIGKREWGNGGPFGSESLMQNPEHTDFFRNDGGSWDTPYGKFFLEWYSDMLLLHGERICREAETIFRGTEVHISAKLAAIHWHYAMQSHPSELTAGYYNTSNRDGYLPIARMFSKYGFSMCCSCFEMQDAVTQKINPDGSPEGFLRQLLLVARLCDISLEGQNFSTNLDDGAFTQVLKMSKFYSDGIEKRPFSFNFVRMDKRLFESRNWDRFTRFVRQLSNGNIFRARLNSVREVRLKTTPVVAAVGLLYHLYQHS*

>Glyma.08g025500.2.p sequence-type=predicted peptide transcript=Glyma.08g025500.2 locus=Glyma.08g025500 ID=Glyma.08g025500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAILSQSTASFSFVSTRTDSTHLTRFPCRVTFRARSPPLRPALVSSRLNSSRSPDAGGSLSPDNGGGDVAYQLHHDFSPQRRRRGSPVFVTLPVNSIGRDGRVARPKAMMFSLKALATAGVEGVVIEIWWGLVEKKKPRVYDWRGYEELVAMACKCGLKVRAVLAFHQHGTGPDDPNWMPLPLWVLDEIQKDTELAYCDRFGQRNIEYISLGCDILPVLCGRSPIQAYADFMRNFRDTFESLLGVVITGVQIGMGPGGELRYPSFSSQEPNLAWSHELGEFQCYDKYMLASLNASARNIGKREWGNGGPFGSESLMQNPEHTDFFRNDGGSWDTPYGKFFLEWYSDMLLLHGERICREAETIFRGTEVHISAKLAAIHWHYAMQSHPSELTAGYYNTSNRDGYLPIARMFSKYGFSMCCSCFEMQDAVTQKINPDGSPEGFLRQLLLVARLCDISLEGQNFSTNLDDGAFTQVLKMSKFYSDGIEKRPFSFNFVRMDKRLFESRNWDRFTRFVRQLSNGNIFRARLNSVREVRLKTTPVVAAVGLLYHLYQHS*






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