SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.08g161500

Feature Type:gene_model
Chromosome:Gm08
Start:12527078
stop:12540036
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g161500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G20490.1AT Myosin family protein with Dil domain JGI N/AIEA
GO:0007015GO-bp actin filament organization EnsemblGenomesN/AIEA
GO:0007018GO-bp microtubule-based movement EnsemblGenomesN/AIEA
GO:0016459GO-cc myosin complex EnsemblGenomesN/AIEA
GO:0016459GO-cc myosin complex JGI N/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0003774GO-mf motor activity EnsemblGenomesN/AIEA
GO:0003774GO-mf motor activity JGI N/AIEA
GO:0003777GO-mf microtubule motor activity EnsemblGenomesN/AIEA
GO:0003779GO-mf actin binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0008017GO-mf microtubule binding EnsemblGenomesN/AIEA
KOG0160 KOG Myosin class V heavy chain JGI N/AIEA
PTHR13140Panther MYOSIN JGI N/AIEA
PTHR13140:SF36Panther JGI N/AIEA
PF00063PFAM Myosin head (motor domain) JGI N/AIEA
PF00612PFAM IQ calmodulin-binding motif JGI N/AIEA
PF01843PFAM DIL domain JGI N/AIEA
PF02736PFAM Myosin N-terminal SH3-like domain JGI N/AIEA
GN7V-58611SoyCyc9-rxn myosin ATPase Plant Metabolic Network ISS

Expression Patterns of Glyma.08g161500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g161500
ParalogEvidenceComments
Glyma.15g266300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g161500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g17170 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g161500
>Glyma.08g161500.1 sequence-type=CDS polypeptide=Glyma.08g161500.1.p locus=Glyma.08g161500 ID=Glyma.08g161500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAACACCTGTGAACATCATCGTTGGATCACAGGTTTGGGTTGAGGATCCTGAGGATGCATGGATTGATGGTGAGGTGACACAAATCAAAGGCAAAAATGCCACCATCATTGCCACAAATGGGAAAACTGTGGTGGCAGAAATTTCAAGCATATACCCCAAAGATACAGAGGCACCACCTGCAGGAGTTGATGACATGACCAAGCTAGCATACCTTCATGAGCCAGGAGTCCTGCATAACCTTGCAACTCGTTTTTCTCTCAATGAGATATATACATATACAGGGAATATCTTAATTGCAGTGAATCCTTTTCGAAGACTGCCGCATTTGTATGACATCCATATGATGGAGCAGTACAAAGGAGCAGCATTTGGAGAGCTTAGTCCTCACCTTTTTGCTGTAGCTGACACATGTTACAGGGCAATGATAAATGAAAATGGAAGCCAATCCATTTTGGTAAGTGGAGAGAGTGGAGCTGGTAAAACTGAGACAACGAAAATGCTCATGAGATATCTAGCATTCATGGGGGGTAGATCTGCTACAGAAGGAAGAACTGTAGAACAACAGGTTTTGGAGTCAAATCCAGTGTTGGAAGCATTTGGAAATGCCAAAACTGTCAAAAACAACAACTCAAGTCGTTTTGGTAAATTTGTTGAAATTCAATTTGACAAGAATGGGAAGATTTCTGGAGCTGCAATCCGTACATATCTCCTCGAAAGATCACGAGTTTGCCAGGTCTCTGATCCAGAGAGAAACTACCATTGCTTTTACATGCTTTGTGCAGCACCACCAGAGGATGTCAAGAAGTACAAGTTAGGGGATCCAAGGCAATTCCACTATCTTAATCAATCAAACTGTTATCAAGTATCGAATGTGGATGATGCAAAAGAATACTTGGAGACCAGAAATGCAATGGATATTGTAGGCATTAGCCAAGAAGAGCAGGATGCGATCTTCCGTGTGGTAGCCGCAATCCTCCATCTTGGAAATGTTGACTTTGTCAAAGGGAAAGAAGTTGATTCTTCCAAATTGAAAGATGATAAATCACTCTTCCACCTCCAAACAGCCGCAGATTTATTCATGTGTGATGCGAAAGCACTGGAAGACTCACTTTGCGAGCGTGTCATTGTAACTCCTGATGGTAACATTACCAAACCTCTTGACCCAGATGCAGCTGCTTTGAGCCGAGATGCCTTGGCAAAGACTGTCTACTCCAAATTGTTTGATTGGATTGTGGACAAGATTAACAGTTCAATTGGTCAAGATTCCAATGCAGTAAGCATAATAGGAGTCCTTGATATTTATGGATTTGAAAGCTTCAAAATCAACAGTTTTGAGCAACTATGCATCAACCTAACGAATGAGAAGTTGCAACAACATTTTAATCAGCATGTATTCAAGATGGAGCAAGAAGAGTACACAAAGGAGGAAATCAATTGGAGCTATGTAGAATTTGTGGATAATCAGGATGTTCTCGATCTTATTGAGAAGAAACCAGGGGGAATTATTGCTCTTCTTGATGAAGCCTGCATGTTCCCTAAATCAACTCATGAGACTTTTGCACAAAAGATGTACCAGACATATAAAGGACACAAGCGCTTCAGCAAGCCAAAACTTTCTCGAACAAATTTCACAATTAACCATTATGCTGGAGATGTCACATATCAAGCAGATTATTTTCTTGATAAAAACAAAGATTATGTTGTAGCAGAGCATCAAGCTCTTTTATGTGCTTCCAAGTGTTCATTTGTTGCTAATATCTTCCCTCCTTTACCAGAGGAGACATCAAAGCAATCAAAATTCTCTTCCATTGGTTCACAATTTAAGCAACAACTGCAATCTCTCATGGAGACACTGAACACAACAGAGCCGCATTACATAAGATGTGTGAAACCAAATACAGTTCTGCAGCCAGGAATCTTTGAGAACTTCAATGTCTTGAACCAACTAAGATGTGGGGGAGTACTTGAGGCAATAAGGATTAGTTGTGCTGGATATCCAACAAAAAGGACATTTGAAGAATTTCTTGATCGCTTTGGAATGCTAGTTCCTGATGTCCTTGATGGCTCTGATGAGAAAAAGGCATCTATGGCCATCTGTGATAAGATGGGTTTAAAAGGCTATCAAATGGGGAAAACAAAGGTATTTCTCAGAGCTGGTCAGATGGCTGAATTAGATGCACGACGAGCCGAAGTCTTAGCTAAAGCGGCCAAACTCATACAGAGACAAATCCGAACACATTTAACGAGAAAGGAGTTTATCACCTTGAGAAAGGCCACTATTCATATCCAAAAGATTTGGAGAGCTAAACTTGCACGTAAACTCTATGAGAATATGAGGAGGGAAGCAGCTTCTATCAGGATACAGAAACACGTGCGTGCACACAGAGCAAGAATGAATTATACAACGTTACAAGCATCAGCTATAGTTATTCAATCAGGTTTGAGAGCATTAGCAGCAAGAAATGAATATAGGTACAGAAGAAGAACAAAGGCTTCAACAAAAATTCAGACACAATGGAGAAGAGCCCAAGCTCTTTCTGGTTACAAACAGCAGAAGAAAGCAACTGTTGCACTTCAATGTCTATGGAGAGCTAAAGTAGCAAGGAAAGAGCTCAGAAAGCTTCGGATGGCTGCAAGAGAAACTGGGGCACTTAAGGAAGCAAAGGACAAGTTGGAGAAGCGTGTTGAGGAGCTTACATGGCGACTGGATATTGAAAAGCACATGAGGACAGATCTTGAAGAAGCTAAAGGGCAAGAGATTGCAAAATTGCAAAATGCTTTACAAGAAATGCAAGGTCAGTTAGATGAAGCCCATGCTGCAATTATACATGAGAGAGAAGCAGCAAAAATAGCAATTGAACAAGCACCACCAGTAATTAAAGAGGTACCTGTTGTGGACAACACAAAGCTAGATTTACTGACAAATAAAAATGAGGAGTTGGAGACTGAAGTAGAAGAGCTGAAAAACAAGATTAAAGACTTTGAAGAAAGGTTCTCAGAAGTCGAGAACGAGAACCAAGAAAGGCTGAAAGAGGCAGAAGAAGCACAGCTTAAAGCAACACAACTTCAGGAGACTATTGAAAGATTAGAATTGAGTTTGTCAAACCTTGAGTCTGAGAACCAGGTTCTATGCCAGAAGGCTTTGGAAGAATCAAAAAATGAAGAACTCTTTGAAGAGATCAAAATCCTCAAGGATCAGATAGCAAATCTAGAATCAGAGAATGAATCCCTACGGAGGCAGGCAGCGGCTGTTGCTTTCGAGCAGAAAGTTCATCCAGAAAAAATAGAATCAGACCATTCAGCAGCTTCTTTGGAGCAGAAAGTTCAACCAGAAAAAATAGAACCAGGCCATTCAGCAACTGCTTTAGAGCAGAAAGTTAATCCAGAAAAAATAGAACCAGTCCATTCAGCAACTGCTTTGGAGCAGAAAGTTCATCCAGAAAAAATAGAACCAGATCATTCAGCAGCTGCTCTAGAGCAGAAAGTTCATCCAGAAAAAATAGAACCAGACCATGAAGTTGCTGTTGCAGAGAAAATGCAAGTGCAACCAAGAGTTATTGCAGATAATATGACTTCACAAATCAAGAATTTGGATAATGGAAGTTCAACCGAGGAAGAATGGCAAGCAAGAAAAGAACCGAGAGCACCAGTCTTCTTGCTTACTAAACAAAGATCACTCACAGATAGGCAACAGGAAAGTCATGATGCACTGCTCAAGTGTCTTACGGAAGATAAGCGATTTGAGAAAAACAGACCAGCTGTTGCTTGTATTGTATATAAATCACTTCTTCATTGGAGATCCCTTGAAGCAGAAAAGACTCATATTTTTGATAAAATTACACATGCTATCCGATCATCTATAGAGAGTCAAGAAGGAATCCATGATCTAGCCTACTGGCTTTCAACAACATCAACACTTCTGTTTTATCTACAATGTACAATGAAGGCCAGCAATACAACTAAGGCAGTGTCACGTAATCGAAACTCGCCCGCCTCTTTGTTTGGCAAAATGGCACAAGGTTTACGTTCATCTTCAATGGGCTTGGGGATTTCAAGTGGCTACAGTGGAATGGTGGACAAGACAAATGGTCAATCTAAAGTAGAAGCCAAGTACCCGGCAATTCTGTTTAAGCAACATTTAACTGCATATGTTGAGAAGATATATGGAATGATCCGTGATAGTTTAAAGAAAGAGATTAGCCCCTTCTTAAATCTGTGTATACAGGCACCAAGATCCATAAGGACTAGATCAATAAGAGGGTCATCCAGAAACATCCATTCAAATATTGTTGCAAAACAACAGGCATTGCATATGTACTGGAAAGGCATTGTGGACAAGCTAGATACTGCCTTGCGTATATTGTCTGATAACTATGTTCCTCCCATCATAACAAGGAAGATATTTAGTCAGGTTTTCTCATTCATGAATGTCCAGCTCTTTAATAGTTTGTTGCTTCGCCGTGAGTGTTGTTCCTTTAGCAATGGAGAATATTTGAAGGCAGGTTTGCATGAGTTGGAACTATGGTGTCTTAAAGCAACAGACCAGTTTGCTGGATCATCTTGGGATGAGCTCAAACACATACGCCAGGCTGTGGGCTTTCTGGTTTTGCATCAAAAGACCCAAAAATCTTTGGAGGAGATCACAAATGAGCTCTGCCCGGTGTTAAGTATTCCACAAATATATCGTATAGGAACTATGTTCTGGGATGACAAGTATGGAGCACATGGATTATCTGCAGAAGTCATTAGCAGAATGAGAGTGATTATGACAGAAGACTCAATAAACATACACAACAGCTCATTCCTTCTAGAGGTGGATTCCAGCATACCATTCTTAATGGAGGAGATGTTCCGGTCAATGAGTGACATCCGCCTATCAGACATGGATGTGGATCCACCACCAATCCTCAGGCAAAGATCTGACTTCCAATTCTTGTTGCAACAAATGGATAGTGACTCTCAGTGA
Predicted protein sequences of Glyma.08g161500
>Glyma.08g161500.1.p sequence-type=predicted peptide transcript=Glyma.08g161500.1 locus=Glyma.08g161500 ID=Glyma.08g161500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGTPVNIIVGSQVWVEDPEDAWIDGEVTQIKGKNATIIATNGKTVVAEISSIYPKDTEAPPAGVDDMTKLAYLHEPGVLHNLATRFSLNEIYTYTGNILIAVNPFRRLPHLYDIHMMEQYKGAAFGELSPHLFAVADTCYRAMINENGSQSILVSGESGAGKTETTKMLMRYLAFMGGRSATEGRTVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQFDKNGKISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDVKKYKLGDPRQFHYLNQSNCYQVSNVDDAKEYLETRNAMDIVGISQEEQDAIFRVVAAILHLGNVDFVKGKEVDSSKLKDDKSLFHLQTAADLFMCDAKALEDSLCERVIVTPDGNITKPLDPDAAALSRDALAKTVYSKLFDWIVDKINSSIGQDSNAVSIIGVLDIYGFESFKINSFEQLCINLTNEKLQQHFNQHVFKMEQEEYTKEEINWSYVEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKMYQTYKGHKRFSKPKLSRTNFTINHYAGDVTYQADYFLDKNKDYVVAEHQALLCASKCSFVANIFPPLPEETSKQSKFSSIGSQFKQQLQSLMETLNTTEPHYIRCVKPNTVLQPGIFENFNVLNQLRCGGVLEAIRISCAGYPTKRTFEEFLDRFGMLVPDVLDGSDEKKASMAICDKMGLKGYQMGKTKVFLRAGQMAELDARRAEVLAKAAKLIQRQIRTHLTRKEFITLRKATIHIQKIWRAKLARKLYENMRREAASIRIQKHVRAHRARMNYTTLQASAIVIQSGLRALAARNEYRYRRRTKASTKIQTQWRRAQALSGYKQQKKATVALQCLWRAKVARKELRKLRMAARETGALKEAKDKLEKRVEELTWRLDIEKHMRTDLEEAKGQEIAKLQNALQEMQGQLDEAHAAIIHEREAAKIAIEQAPPVIKEVPVVDNTKLDLLTNKNEELETEVEELKNKIKDFEERFSEVENENQERLKEAEEAQLKATQLQETIERLELSLSNLESENQVLCQKALEESKNEELFEEIKILKDQIANLESENESLRRQAAAVAFEQKVHPEKIESDHSAASLEQKVQPEKIEPGHSATALEQKVNPEKIEPVHSATALEQKVHPEKIEPDHSAAALEQKVHPEKIEPDHEVAVAEKMQVQPRVIADNMTSQIKNLDNGSSTEEEWQARKEPRAPVFLLTKQRSLTDRQQESHDALLKCLTEDKRFEKNRPAVACIVYKSLLHWRSLEAEKTHIFDKITHAIRSSIESQEGIHDLAYWLSTTSTLLFYLQCTMKASNTTKAVSRNRNSPASLFGKMAQGLRSSSMGLGISSGYSGMVDKTNGQSKVEAKYPAILFKQHLTAYVEKIYGMIRDSLKKEISPFLNLCIQAPRSIRTRSIRGSSRNIHSNIVAKQQALHMYWKGIVDKLDTALRILSDNYVPPIITRKIFSQVFSFMNVQLFNSLLLRRECCSFSNGEYLKAGLHELELWCLKATDQFAGSSWDELKHIRQAVGFLVLHQKTQKSLEEITNELCPVLSIPQIYRIGTMFWDDKYGAHGLSAEVISRMRVIMTEDSINIHNSSFLLEVDSSIPFLMEEMFRSMSDIRLSDMDVDPPPILRQRSDFQFLLQQMDSDSQ*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo