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Report for Sequence Feature Glyma.08g190500

Feature Type:gene_model
Chromosome:Gm08
Start:15312402
stop:15323416
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g190500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G34450.2AT HMG-box (high mobility group) DNA-binding family protein JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA

Expression Patterns of Glyma.08g190500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g190500 not represented in the dataset
Glyma.08g190500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.08g190500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g20341 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.08g190500
>Glyma.08g190500.2 sequence-type=transcript locus=Glyma.08g190500 ID=Glyma.08g190500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTAACGTTAGCATTTCTAGGACGCGTTCATTAATTTTTATATAAAAATTCAAAAATCACAGCCACCACCAGTATGGTCTGGTTTCGTCTTCAATGAAACTAGAATATGAGAGAGAGGAAGAAGAAGATAACAAAAGGGAAAATCAGCTTCTTGACTGGACTACTATGAAGGAGAAGGTTAAATACTATGATATAGCATCAGAAAAGCGTATAGAATTTGATAGAGCAATGGCAGAATTTAACAATAAAATGGTGCCTTGGACAAATCTGGAACTTCTTCAAACTGTTTGCATTCACCAAGCTCAATTTCCTGTAAATAGTCAAGTTCCTGTAAAAAATTCAAAAGGAGAGAGACATCACAACGGAAAATCCTCAAAAAAGGAAGAAAAAAAATGTAAACATGTGCACATACCTATCTTTCTTTACCTGGATCCCCTGCCAAAGTTGTTTAAGTTTGCTGTGTGGCATTGGAATCTCAACAAGAAACTTAGCAAAGAAAGGTGATGGAGACTGAAAAGGGTATCCAATCCACTCAATGTACCTCAGTTGATCAGAAAATGGCTCAAGAGTAGCAGGAAGGTCGAGGATCTTCTCTACATGCTTGACGTACTATCTCCAAAGCCGTTTGTTGCAGCAAGTCATGCATTTGTATTGTTTTGCTTTGTCAAAGCTTTGTCTTTAAGATCTTTTATTCTACTAGTTGCCGCAAAACCACAGGCATCTAATATCCTTATGACATGATCTTCCATTTTTCCTTTTAAAAAAAAAATACAATGTCTAGAAATATATTCTTTTGTGGATCATCTAA

>Glyma.08g190500.3 sequence-type=transcript locus=Glyma.08g190500 ID=Glyma.08g190500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTAACGTTAGCATTTCTAGGACGCGTTCATTAATTTTTATATAAAAATTCAAAAATCACAGCCACCACCAGTATGGTCTGGTTTCGTCTTCAATGAAACTAGAATATGAGAGAGAGGAAGAAGAAGATAACAAAAGGGAAAATCAGCTTCTTGACTGGACTACTATGAAGGTGCCTTGGACAAATCTGGAACTTCTTCAAACTGTTTGCATTCACCAAGCTCAATTTCCTGTAAATAGTCAAGTTCCTGTAAAAAATTCAAAAGGAGAGAGACATCACAACGGAAAATCCTCAAAAAAGGAAGAAAAAAAATGTAAACATGTGCACATACCTATCTTTCTTTACCTGGATCCCCTGCCAAAGTTGTTTAAGTTTGCTGTGTGGCATTGGAATCTCAACAAGAAACTTAGCAAAGAAAGGTGATGGAGACTGAAAAGGGTATCCAATCCACTCAATGTACCTCAGTTGATCAGAAAATGGCTCAAGAGTAGCAGGAAGGTCGAGGATCTTCTCTACATGCTTGACGTACTATCTCCAAAGCCGTTTGTTGCAGCAAGTCATGCATTTGTATTGTTTTGCTTTGTCAAAGCTTTGTCTTTAAGATCTTTTATTCTACTAGTTGCCGCAAAACCACAGGCATCTAATATCCTTATGACATGATCTTCCATTTTTCCTTTTAAAAAAAAAATACAATGTCTAGAAATATATTCTTTTGTGGATCATCTAA
Coding sequences of Glyma.08g190500
>Glyma.08g190500.1 sequence-type=CDS polypeptide=Glyma.08g190500.1.p locus=Glyma.08g190500 ID=Glyma.08g190500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAACTAGAATATGAGAGAGAGGAAGAAGAAGATAACAAAAGGGAAAATCAGCTTCTTGACTGGACTACTATGAAGATTGGCAATGCATTTGGAAAGAAGTGGATATCAATGACTAACGAGGAGAAGGTTAAATACTATGATATAGCATCAGAAAAGCGTATAGAATTTGATAGAGCAATGGCAGAATTTAACAATAAAATGGTGCCTTGGACAAATCTGGAACTTCTTCAAACTGTTTGCATTCACCAAGCTCAATTTCCTGTAAATAGTCAAGTTCCTGTAAAAAATTCAAAAGGAGAGAGACATCACAACGGAAAATCCTCAAAAAAGGAAGAAAAAAAATGTAAACATGTGCACATACCTATCTTTCTTTACCTGGATCCCCTGCCAAAGTTGTTTAAGTTTGCTGTGTGGCATTGGAATCTCAACAAGAAACTTAGCAAAGAAAGGTGA

>Glyma.08g190500.2 sequence-type=CDS polypeptide=Glyma.08g190500.2.p locus=Glyma.08g190500 ID=Glyma.08g190500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAACTAGAATATGAGAGAGAGGAAGAAGAAGATAACAAAAGGGAAAATCAGCTTCTTGACTGGACTACTATGAAGGAGAAGGTTAAATACTATGATATAGCATCAGAAAAGCGTATAGAATTTGATAGAGCAATGGCAGAATTTAACAATAAAATGGTGCCTTGGACAAATCTGGAACTTCTTCAAACTGTTTGCATTCACCAAGCTCAATTTCCTGTAAATAGTCAAGTTCCTGTAAAAAATTCAAAAGGAGAGAGACATCACAACGGAAAATCCTCAAAAAAGGAAGAAAAAAAATGTAAACATGTGCACATACCTATCTTTCTTTACCTGGATCCCCTGCCAAAGTTGTTTAAGTTTGCTGTGTGGCATTGGAATCTCAACAAGAAACTTAGCAAAGAAAGGTGA

>Glyma.08g190500.3 sequence-type=CDS polypeptide=Glyma.08g190500.3.p locus=Glyma.08g190500 ID=Glyma.08g190500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAACTAGAATATGAGAGAGAGGAAGAAGAAGATAACAAAAGGGAAAATCAGCTTCTTGACTGGACTACTATGAAGGTGCCTTGGACAAATCTGGAACTTCTTCAAACTGTTTGCATTCACCAAGCTCAATTTCCTGTAAATAGTCAAGTTCCTGTAAAAAATTCAAAAGGAGAGAGACATCACAACGGAAAATCCTCAAAAAAGGAAGAAAAAAAATGTAAACATGTGCACATACCTATCTTTCTTTACCTGGATCCCCTGCCAAAGTTGTTTAAGTTTGCTGTGTGGCATTGGAATCTCAACAAGAAACTTAGCAAAGAAAGGTGA
Predicted protein sequences of Glyma.08g190500
>Glyma.08g190500.1.p sequence-type=predicted peptide transcript=Glyma.08g190500.1 locus=Glyma.08g190500 ID=Glyma.08g190500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKLEYEREEEEDNKRENQLLDWTTMKIGNAFGKKWISMTNEEKVKYYDIASEKRIEFDRAMAEFNNKMVPWTNLELLQTVCIHQAQFPVNSQVPVKNSKGERHHNGKSSKKEEKKCKHVHIPIFLYLDPLPKLFKFAVWHWNLNKKLSKER*

>Glyma.08g190500.2.p sequence-type=predicted peptide transcript=Glyma.08g190500.2 locus=Glyma.08g190500 ID=Glyma.08g190500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKLEYEREEEEDNKRENQLLDWTTMKEKVKYYDIASEKRIEFDRAMAEFNNKMVPWTNLELLQTVCIHQAQFPVNSQVPVKNSKGERHHNGKSSKKEEKKCKHVHIPIFLYLDPLPKLFKFAVWHWNLNKKLSKER*

>Glyma.08g190500.3.p sequence-type=predicted peptide transcript=Glyma.08g190500.3 locus=Glyma.08g190500 ID=Glyma.08g190500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKLEYEREEEEDNKRENQLLDWTTMKVPWTNLELLQTVCIHQAQFPVNSQVPVKNSKGERHHNGKSSKKEEKKCKHVHIPIFLYLDPLPKLFKFAVWHWNLNKKLSKER*






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