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Report for Sequence Feature Glyma.09g022300

Feature Type:gene_model
Chromosome:Gm09
Start:1786058
stop:1789270
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g022300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G06720.1AT peroxidase 2 JGI N/AIEA
GO:0006979GO-bp response to oxidative stress EnsemblGenomesN/AIEA
GO:0006979GO-bp response to oxidative stress JGI N/AIEA
GO:0042744GO-bp hydrogen peroxide catabolic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0098869GO-bp cellular oxidant detoxification EnsemblGenomesN/AIEA
GO:0005576GO-cc extracellular region EnsemblGenomesN/AIEA
GO:0004601GO-mf peroxidase activity EnsemblGenomesN/AIEA
GO:0004601GO-mf peroxidase activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0020037GO-mf heme binding EnsemblGenomesN/AIEA
GO:0020037GO-mf heme binding JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
PF00141PFAM Peroxidase JGI N/AIEA
GN7V-60621SoyCyc9-rxn peroxidase Plant Metabolic Network ISS

Proteins Associated with Glyma.09g022300
LocusGene SymbolProtein Name
Ep Ep Seed coat peroxidase gene 1
Ep PRX1 Peroxidase 1 gene
SPOD4.1 Ep, peroxidase

Expression Patterns of Glyma.09g022300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g022300
ParalogEvidenceComments
Glyma.15g128600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g022300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g02590 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.09g022300
>Glyma.09g022300.1 sequence-type=CDS polypeptide=Glyma.09g022300.1.p locus=Glyma.09g022300 ID=Glyma.09g022300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTTCCATGCGTCTATTAGTAGTGGCATTGTTGTGTGCATTTGCTATGCATGCAGGTTTTTCAGTCTCTTATGCTCAGCTTACTCCTACGTTCTACAGAGAAACATGTCCAAATCTGTTCCCTATTGTGTTTGGAGTAATCTTCGATGCTTCTTTCACCGATCCCCGAATCGGGGCCAGTCTCATGAGGCTTCATTTTCATGATTGCTTTGTTCAAGGTTGTGATGGATCAGTTTTGCTGAACAACACTGATACAATAGAAAGCGAGCAAGATGCACTTCCAAATATCAACTCAATAAGAGGATTGGACGTTGTCAATGACATCAAGACAGCGGTGGAAAATAGTTGTCCAGACACAGTTTCTTGTGCTGATATTCTTGCTATTGCAGCTGAAATAGCTTCTGTTCTGGGAGGAGGTCCAGGATGGCCAGTTCCATTAGGAAGAAGGGACAGCTTAACAGCAAACCGAACCCTTGCAAATCAAAACCTTCCAGCACCTTTCTTCAACCTCACTCAACTTAAAGCTTCCTTTGCTGTTCAAGGTCTCAACACCCTTGATTTAGTTACACTCTCAGGTGGTCATACGTTTGGAAGAGCTCGGTGCAGTACATTCATAAACCGATTATACAACTTCAGCAACACTGGAAACCCTGATCCAACTCTGAACACAACATACTTAGAAGTATTGCGTGCAAGATGCCCCCAGAATGCAACTGGGGATAACCTCACCAATTTGGACCTGAGCACACCTGATCAATTTGACAACAGATACTACTCCAATCTTCTGCAGCTCAATGGCTTACTTCAGAGTGACCAAGAACTTTTCTCCACTCCTGGTGCTGATACCATTCCCATTGTCAATAGCTTCAGCAGTAACCAGAATACTTTCTTTTCCAACTTTAGAGTTTCAATGATAAAAATGGGTAATATTGGAGTGCTGACTGGGGATGAAGGAGAAATTCGCTTGCAATGTAATTTTGTGAATGGAGACTCGTTTGGATTAGCTAGTGTGGCGTCCAAAGATGCTAAACAAAAGCTTGTTGCTCAATCTAAATAA
Predicted protein sequences of Glyma.09g022300
>Glyma.09g022300.1.p sequence-type=predicted peptide transcript=Glyma.09g022300.1 locus=Glyma.09g022300 ID=Glyma.09g022300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGSMRLLVVALLCAFAMHAGFSVSYAQLTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTIESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFINRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQCNFVNGDSFGLASVASKDAKQKLVAQSK*






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