SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.09g153100

Feature Type:gene_model
Chromosome:Gm09
Start:37563574
stop:37585322
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g153100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G51660.1AT cleavage and polyadenylation specificity factor 160 JGI N/AIEA
GO:0006378GO-bp mRNA polyadenylation EnsemblGenomesN/AIEA
GO:0006379GO-bp mRNA cleavage EnsemblGenomesN/AIEA
GO:0005576GO-cc extracellular region EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0048046GO-cc apoplast EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0003729GO-mf mRNA binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0016853GO-mf isomerase activity EnsemblGenomesN/AIEA
KOG1896 KOG mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) JGI N/AIEA
PTHR10644Panther DNA REPAIR/RNA PROCESSING CPSF FAMILY JGI N/AIEA
PTHR10644:SF2Panther CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 1 JGI N/AIEA
PF03178PFAM CPSF A subunit region JGI N/AIEA

Expression Patterns of Glyma.09g153100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g153100
ParalogEvidenceComments
Glyma.16g203900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g153100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g28030 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.09g153100
>Glyma.09g153100.1 sequence-type=CDS polypeptide=Glyma.09g153100.1.p locus=Glyma.09g153100 ID=Glyma.09g153100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTTTCGCGGCGTACAAGATGATGCAGTGCCCCACCGGCATCGACAACTGCGCCGCCGGCTTCCTCACCCACTCCCGCTCCGACTTCGTTCCTCTCCAGCCCGACGACCTCGACGCTGCCGAGTGGCCCTCCCGCCCCCGCCACCACGTTGGCCCCCTCCCCAACCTCGTCGTCACCGCCGCCAACGTCCTCGAAGTCTACGCGGTCCGCCTCCAGGAGGACCAGCAGCCCAAGGATGCCTCCGACGACTCCCGCCGCGGTACCCTCCTCGACGGCATTGCCGGGGCCTCCCTCGAGCTCGAGTGCCACTACAGGTTGCATGGTAATGTTGAAACCATGGCTGTTTTGAGCATTGGAGGTGGTGATGTTTCTAGGAAGAGAGATTCTATCATCTTAACTTTCGCAGATGCAAAGATTTCAGTTCTTGAGTATGATGATTCTATTCACGGACTTCGTACTAGTTCTTTGCATTGTTTTGAGGGTCCAGAATGGCTTCATCTGAAAAGAGGAAGAGAACAATTTGCAAGAGGACCAGTGGTAAAGATTGATCCTCAAGGCAGGTGTGGTGGAGTTCTTATCTATGATTTGCAAATGATAATACTAAAGGCTACTCAGGTTGGTTCTGGTTTAGTTGGGGATGATGATGCCTTTGGATCTTCAGGAGCAGTTGCTGCTCGTATTGAGTCATCTTATATGATAAACCTACGTGACTTGGATATGAGGCATGTAAAAGATTTTACGTTTGTTTATGGCTATATTGAACCTGTAATGGTGATTTTGCATGAACGTGAGCTCACTTGGGCTGGGCGTGTCTCATGGACGCATCACACTTGCATGATATCAGCACTTAGTATCAGCACAACTTTGAAGCAGCATCCACTTATTTGGTCAGCTGTTAATCTTCCCCATGATGCATACAAGCTTCTTGCGGTGCCATCGCCAATAGGTGGCGTTCTTGTAATTGGTGCTAACACTATTCATTATCACAGTCAGTCTGCTTCTTGTGCATTGGCCTTGAACAACTATGCTGTTACACTTGACAGTAGTCAAGAGATACCAAGATCAAGTTTCAATGTTGAGCTTGATGCTGCCAATGCAACTTGGTTGTTGAGTGATGTGGCCTTGCTGTCAACAAAAACTGGCGAACTGCTATTGCTTATGCTTGTTTATGATGGAAGGGTTGTACAGAGACTTGATCTTTCCAAGTCAAAAGCTTCAGTTCTGTCATCTGGTATTACAACAATTGGAAATTCTCTGTTTTTCCTCGCCAGTCGGTTAGGGGACAGTATGCTGGTGCAATTTTCTTGTGGATCAGGTGTTTCCATGATGTCATCCAATCTAAAAGAAGAGGTTGGTGATATTGAAGTAGATGCTCCATCAAAGAGATTGCGGAGGTCACCTTCTGATGCTTTGCAAGATATGGTTAGTGGTGAGGAGCTCTCCTTGTATGGGTCTGCTACAAATAGAACAGAATCAGCACAGAAATCCTTCTCGTTTGCAGTGAGGGATTCATTGATTAACGTTGGTCCTTTGAAAGATTTCTCATATGGTTTAAGAATAAATGCTGATGCAAATGCTACAGGGATAGCCAAACAGAGTAACTATGAATTGGTGTGCTGTTCTGGTCATGGAAAGAATGGTTCTCTGTGTGTTCTGCGGCAATCAATTCGCCCAGAAGTGATTACTGAGGTTGAACTTCCTGGTTGCAAAGGAATTTGGACTGTGTATCATAAGAGCACACGTTCTCATAATGCTGATTCTTCTAAGATGGCTGATGACGACGATGAGTATCATGCTTACCTTATTATTAGCTTGGAGGCTCGAACTATGGTACTAGAAACTGCTGATCTTCTTAGTGAGGTTACTGAAAGTGTGGACTATTATGTTCAAGGAAAAACACTTGCTGCAGGGAATTTATTTGGAAGGCGTCGAGTTATCCAAGTCTATGAACGTGGTGCTCGAATTCTAGATGGTTCTTTTATGACCCAAGACGTAAGCTTTGGAGCTTCTAACTCAGAATCTGGTTCTGCATCTGAGAGTGCTATAGCACTTTCTGTTTCTATAGCTGATCCATTTGTCTTACTCAGAATGAGTGATGGAAGTATTCGACTTCTGATTGGAGATCCTAGTACCTGCACTATTTCTGTCACTTCTCCAGCTTCATTTGAGAGCTCCAAGGGATCAGTTTCTTCATGTACACTGTACCATGATAAAGGACCCGAGCCTTGGCTGAGGAAAACAAGTACTGATGCATGGCTTTCTACTGGTGTTGGTGAGGCTATTGATGGCACTGATGGTGCTGCTCAGGACCATGGGGATATTTATTGTGTTGTTTGTTTTGATAATGGTAACCTTGAAATATTTGATATCCCCAATTTCAATTGTGTCTTTTCTGTGGAAAATTTTATGTCTGGAAAGAGCCATCTTGTTGATGCTCTGATGAAAGAGGTACTAAAAGATTCTAAACAAGGGGATCGGGATGGAGTGGTCAACCAAGGGAGGAAGGATAATATACCGAATATGAAGGTTGTAGAGTTGGCCATGCAGAGATGGTCTGGGCAGCATAGCCGTCCATTTCTTTTTGGGATTTTGAGTGATGGAACTATTCTTTGTTACCATGCTTACCTTTATGAAAGTCCAGATGGTACTTCTAAAGTTGAGGATTCCGCATCAGCTGGAGGATCCATTGGCCTTAGTAGTACCAATGTTTCCAGGCTTAGAAATTTGAGATTTGTTCGTGTGCCCTTGGATGCATATCCCAGGGAGGATACCTCAAATGGATCACCTTGTCAACAAATTACTATTTTCAAGAATATTGGTAGTTATCAGGGATTCTTCCTATCAGGGTCAAGACCAGCATGGGTTATGGTGTTGAGGGAACGACTTCGTGTTCATCCACAGCTATGTGATGGATCTATTGTTGCTTTTACCGTCCTTCACAACGTGAACTGCAATCATGGACTTATATATGTTACATCACAGGGTGTTTTGAAGATATGTCAGTTGCCTTCTGGCTCAAACTATGACAGCTACTGGCCTGTACAAAAAATTCCACTAAAAGCCACACCACACCAAGTAACATACTTTGCGGAGAAGAACTTATATCCACTTATTGTCTCATTCCCTGTTCTTAAGCCACTAAATCAAGTTATTTCTCTGGTTGACCAAGATTTCAACCATCAAAATGAGAGTCAGAATATGAATCCTGATGAGCAAAACCGCTTTTATCCTATTGATGAATTTGAGGTTCGTATTATGGAGCCAGAAAAGTCTGGTGGCCCTTGGCAAACAAAGGCAACAATACCTATGCAAAGTTCTGAAAATGCCCTTACTGTGAGGATGGTTACTTTACTGAATACAACCTCAAAAGAAAATGAAACACTTTTAGCCATTGGTACTGCTTATGTGCAAGGAGAGGATGTTGCTGCAAGAGGACGTATCCTCTTGTTCTCTTTGGGGAAAATTACTGATAATCCACAAACTCTGGTTTCAGAGGTGTACTCTAAGGAATTAAAAGGTGCTATATCTGCCTTGGCCTCACTTCAAGGCCATCTATTAATAGCATCTGGTCCAAAAATTATTCTGCACAAGTGGAATGGCACTGAGTTGAATGGTATTGCATTTTTTGACGCACCGCCATTACATGTTGTGAGCTTAAACATTGTAAAGAACTTCATCCTTATTGGCGATATCCATAAAAGCATATACTTTCTTAGTTGGAAAGAGCAGGGTGCTCAATTGAGCTTATTAGCCAAGGATTTTGGTTCTCTCGATTGTTTTGCGACGGAATTTTTGATTGATGGAAGTACTCTTAGTCTCATGGTTTCAGATGATAATAGAAACATCCAGATTTTTTACTATGCACCAAAGATGTCTGAGAGTTGGAAAGGACAGAAGCTTCTTTCAAGAGCTGAATTTCATGTTGGTGCCCATGTGACTAAATTCTTAAGGTTGCAAATGCTATCCACTTCGGATAGAGCTGGTTCAGTTCCAGGCTCAGATAAAACCAATCGTTTTGCCTTATTATTTGGTACCTTGGATGGAAGTATTGGTTGCATTGCACCTCTTGATGAAATCACATTTCGCAGACTGCAGTCTTTGCAGAGAAAACTTGTTGATGCTGTACCCCATGTTGCTGGCCTGAACCCCAGAGCTTTCAGATTATTTCGGTCAAATGGAAAGGCCCATCGGCCAGGCCCTGACAGTATAGTTGATTGCGAGCTGCTATGCCATTATGAAATGCTTCCATTGGAGGAACAGCTTGAAATTGCTAACCAGATTGGAACAACTCGATCACAAATTCTGTCAAATCTAAGCGATCTGTCTCTTGGAACAAGCTTCTTGTGA
Predicted protein sequences of Glyma.09g153100
>Glyma.09g153100.1.p sequence-type=predicted peptide transcript=Glyma.09g153100.1 locus=Glyma.09g153100 ID=Glyma.09g153100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSFAAYKMMQCPTGIDNCAAGFLTHSRSDFVPLQPDDLDAAEWPSRPRHHVGPLPNLVVTAANVLEVYAVRLQEDQQPKDASDDSRRGTLLDGIAGASLELECHYRLHGNVETMAVLSIGGGDVSRKRDSIILTFADAKISVLEYDDSIHGLRTSSLHCFEGPEWLHLKRGREQFARGPVVKIDPQGRCGGVLIYDLQMIILKATQVGSGLVGDDDAFGSSGAVAARIESSYMINLRDLDMRHVKDFTFVYGYIEPVMVILHERELTWAGRVSWTHHTCMISALSISTTLKQHPLIWSAVNLPHDAYKLLAVPSPIGGVLVIGANTIHYHSQSASCALALNNYAVTLDSSQEIPRSSFNVELDAANATWLLSDVALLSTKTGELLLLMLVYDGRVVQRLDLSKSKASVLSSGITTIGNSLFFLASRLGDSMLVQFSCGSGVSMMSSNLKEEVGDIEVDAPSKRLRRSPSDALQDMVSGEELSLYGSATNRTESAQKSFSFAVRDSLINVGPLKDFSYGLRINADANATGIAKQSNYELVCCSGHGKNGSLCVLRQSIRPEVITEVELPGCKGIWTVYHKSTRSHNADSSKMADDDDEYHAYLIISLEARTMVLETADLLSEVTESVDYYVQGKTLAAGNLFGRRRVIQVYERGARILDGSFMTQDVSFGASNSESGSASESAIALSVSIADPFVLLRMSDGSIRLLIGDPSTCTISVTSPASFESSKGSVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGAAQDHGDIYCVVCFDNGNLEIFDIPNFNCVFSVENFMSGKSHLVDALMKEVLKDSKQGDRDGVVNQGRKDNIPNMKVVELAMQRWSGQHSRPFLFGILSDGTILCYHAYLYESPDGTSKVEDSASAGGSIGLSSTNVSRLRNLRFVRVPLDAYPREDTSNGSPCQQITIFKNIGSYQGFFLSGSRPAWVMVLRERLRVHPQLCDGSIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSGSNYDSYWPVQKIPLKATPHQVTYFAEKNLYPLIVSFPVLKPLNQVISLVDQDFNHQNESQNMNPDEQNRFYPIDEFEVRIMEPEKSGGPWQTKATIPMQSSENALTVRMVTLLNTTSKENETLLAIGTAYVQGEDVAARGRILLFSLGKITDNPQTLVSEVYSKELKGAISALASLQGHLLIASGPKIILHKWNGTELNGIAFFDAPPLHVVSLNIVKNFILIGDIHKSIYFLSWKEQGAQLSLLAKDFGSLDCFATEFLIDGSTLSLMVSDDNRNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSDRAGSVPGSDKTNRFALLFGTLDGSIGCIAPLDEITFRRLQSLQRKLVDAVPHVAGLNPRAFRLFRSNGKAHRPGPDSIVDCELLCHYEMLPLEEQLEIANQIGTTRSQILSNLSDLSLGTSFL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo