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Report for Sequence Feature Glyma.09g184600

Feature Type:gene_model
Chromosome:Gm09
Start:40986140
stop:40988677
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G25440.1AT B-box type zinc finger protein with CCT domain JGI N/AIEA
AT1G68520.1AT B-box type zinc finger protein with CCT domain JGI N/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
KOG1601 KOG GATA-4/5/6 transcription factors JGI N/AIEA
PF00643PFAM B-box zinc finger JGI N/AIEA
PF06203PFAM CCT motif JGI N/AIEA

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE


View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.



View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


ParalogEvidenceComments
Glyma.07g091400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Corresponding NameAnnotation VersionEvidenceComments
Glyma13g33420 Wm82.a1.v1.1IGC As supplied by JGI


>Glyma.09g184600.2 sequence-type=transcript locus=Glyma.09g184600 ID=Glyma.09g184600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGACTATAATAATTTCTCATTACACTGGGGGGGCAAGGAACCAAGTGAGTAAGAACAAACTATAAGACCCCACTGTGCTTCTCTCTCATCACATTTTCAAGTCTCAGCATAACCAATAATTGAAATTGAATCATTTGGGTCTCTAGCTAGATACAAACACCACCACCCCTCTTTCCCACTCCTCAACACTGTTATGATCCCTTGTTGGTAACTATTCAATTTGCACTTCCCTTCGCAACCAAGAAAATCAGCTCCTATATGACCAACGAAATGAAAGAAGCAAGTGCCTTAGGAGCTAGAACAGCACGAGCATGCGAGAGCTGCCTAAAAGTAAGAGCAAGGTGGTATTGTGCAGCTGATGATGCTTTCCTTTGCCATGGCTGTGACAACATGGTTCACTCAGCAAACCAATTAGCAAGCAGACACGAAAGGGTGAAGCTTCAAACTGCATCCTCCAAGGTCAACTACTCAGTGACCCCTAAGGTAGCATGGCACAGTGGATTCACACGCAAGGCAAGAACCCCTCGcagcaacaacaagcactcatcgctgcaacaacaacaacaaaaaccattacatgaagaacaaggagaagaagaagaagTGTTTTTCAATAACACCATCATTAGTGTTCAACCCCTTGTGCCTGAGCTTGGAAGTGAAGAGCCATTGCTTAATGATGAGACCGAGGAGCAACTCCTGTGTCGCGTGCCCGTATTTGATGCTGAGCTTTGTAGCATATACAATGAAGTGAAGGACGAGGTTAATGTAGCTGGTGGTGAAGTAGCCTTTGACTTGGAAAACTTTTCTTCTGAGTTTCTACCAACAGATATGGATCTTGCTGAGTTTTCTGCTGATGTGGAAAGCTTACTTGGAAACGGGGTTGATGAGGATTCACCTGTGAAGAAAGGATCAGAACTAGTGCTTCTTGATTGCAAAGAAGAAGGAGATGATGAAATGGATGCATGTGTTAATGGAATTGGAGCCAACAaagatgcaatggttaaggtcaaagatgaagaagaacttgatgctgatgatgaCACAGCTTGCCATTTGGATTCGATTCTTGACATGAATAGCGAGGCCTTTAATTGGAATATTGCTGAGTCAGAGTCACCTGCACAGGCACAAGAAGATGAAGTGAGTAAAGTGGGAACCAATAAGAAGGACATATTTTTGAGGCTAAACTATGAAGAAGTCATTACTGCTTGGGCAAGTCAAGGTTCTCCATGGACTACAGGAACCCCACCTAAGTTCTTCAACTCCGATGATTGCTGGCTAGACTTGTTTTCTTATAGTATCATAGCCGATCTCATATATATCTGGCTAAAGGAGGAAGGTTGTGTTGCGTCTTCAGTAACCGATGTAAAATTCGTCGATATACCTGAAATCATTCGTAGGGCGGAGATGTGTTATGCCTTCGGTAACCAATGCAAAGGTTCGAATGGTGGGGGTGTTCAATGCTATTATGGGGAAGTGAGAAGCTTAAGAGTGCATGCAGATGGGGGAAGAGAAGCAAGAGTGTCAAGGTACCGAGAGAAGAGAAGAACGCGTTTATTTGCAAAGAAGATAAGGTATGAAGTGAGGAAGTTAAACGCGGAGAAAAGACCTAGAATGAAAGGTCGATTTGTGAAGAGTGTTCCTTTGTTGGAGCCACTGCTTTGCCAGCTTAATTATCAATCATCACCACTGACATGATTGATCATCAAAGTGATCAAATTAATGGTCTAGCTAGTACTAATGGAAATGTGGTAGCCCCTCTCAGCATTTTGAAGGCTTTGGTAATCAATTTCAGAAGCCCTTTTTCAATGTTGCTTGATTGTCATCATATGAATAAAAATCTGTAACTAATCTATATGCTGATGTTATGTTTACCTTTTAACTCTTTGAGGGTACTGATTAACAGTGTTTAATATATCGGGTACTTATATCTACAAGTTTT

>Glyma.09g184600.3 sequence-type=transcript locus=Glyma.09g184600 ID=Glyma.09g184600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGACTATAATAATTTCTCATTACACTGGGGGGGCAAGGAACCAAGTGAGTAAGAACAAACTATAAGACCCCACTGTGCTTCTCTCTCATCACATTTTCAAGTCTCAGCATAACCAATAATTGAAATTGAATCATTTGGGTCTCTAGCTAGATACAAACACCACCACCCCTCTTTCCCACTCCTCAACACTGTTATGATCCCTTGTTGGTAACTATTCAATTTGCACTTCCCTTCGCAACCAAGAAAATCAGCTCCTATATGACCAACGAAATGAAAGAAGCAAGTGCCTTAGGAGCTAGAACAGCACGAGCATGCGAGAGCTGCCTAAAAGTAAGAGCAAGGTGGTATTGTGCAGCTGATGATGCTTTCCTTTGCCATGGCTGTGACAACATGGTTCACTCAGCAAACCAATTAGCAAGCAGACACGAAAGGGTGAAGCTTCAAACTGCATCCTCCAAGGTCAACTACTCAGTGACCCCTAAGGTAGCATGGCACAGTGGATTCACACGCAAGGCAAGAACCCCTCGcagcaacaacaagcactcatcgctgcaacaacaacaacaaaaaccattacatgaagaacaaggagaagaagaagaagTGTTTTTCAATAACACCATCATTAGTGTTCAACCCCTTGTGCCTGAGCTTGGAAGTGAAGAGCCATTGCTTAATGATGAGACCGAGGAGCAACTCCTGTGTCGCGTGCCCGTATTTGATGCTGAGCTTTGTAGCATATACAATGAAGTGAAGGACGAGGTTAATGTAGCTGGTGGTGAAGTAGCCTTTGACTTGGAAAACTTTTCTTCTGAGTTTCTACCAACAGATATGGATCTTGCTGAGTTTTCTGCTGATGTGGAAAGCTTACTTGGAAACGGGGTTGATGAGGATTCACCTGTGAAGAAAGGATCAGAACTAGTGCTTCTTGATTGCAAAGAAGAAGGAGATGATGAAATGGATGCATGTGTTAATGGAATTGGAGCCAACAaagatgcaatggttaaggtcaaagatgaagaagaacttgatgctgatgatgaCACAGCTTGCCATTTGGATTCGATTCTTGACATGAATAGCGAGGCCTTTAATTGGAATATTGCTGAGTCAGAGTCACCTGCACAGGCACAAGAAGATGAAGTGAGTAAAGTGGGAACCAATAAGAAGGACATATTTTTGAGGCTAAACTATGAAGAAGTCATTACTGCTTGGGCAAGTCAAGGTTCTCCATGGACTACAGGAACCCCACCTAAGTTCTTCAACTCCGATGATTGCTGGCTAGACTTGGGTTCGAATGGTGGGGGTGTTCAATGCTATTATGGGGAAGTGAGAAGCTTAAGAGTGCATGCAGATGGGGGAAGAGAAGCAAGAGTGTCAAGGTACCGAGAGAAGAGAAGAACGCGTTTATTTGCAAAGAAGATAAGGTATGAAGTGAGGAAGTTAAACGCGGAGAAAAGACCTAGAATGAAAGGTCGATTTGTGAAGAGTGTTCCTTTGTTGGAGCCACTGCTTTGCCAGCTTAATTATCAATCATCACCACTGACATGATTGATCATCAAAGTGATCAAATTAATGGTTAACTTCTCCAAGTTAATTTGATTTTATGGAAAAGTTAATTTTTAGATTAATTATTAGTTACTTGGTTTTGCCATATATGTACAATATCATCACTAGGTCAGGTTTCTCTTGCTTGGGATATTTATTTCTTTCTCTAACAGGTCTAGCTAGTACTAATGGAAATGTGGTAGCCCCTCTCAGCATTTTGAAGGCTTTGGTAATCAATTTCAGAAGCCCTTTTTCAATGTTGCTTGATTGTCATCATATGAATAAAAATCTGTAACTAATCTATATGCTGATGTTATGTTTACCTTTTAACTCTTTGAGGGTACTGATTAACAGTGTTTAATATATCGGGTACTTATATCT

>Glyma.09g184600.1 sequence-type=CDS polypeptide=Glyma.09g184600.1.p locus=Glyma.09g184600 ID=Glyma.09g184600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACCAACGAAATGAAAGAAGCAAGTGCCTTAGGAGCTAGAACAGCACGAGCATGCGAGAGCTGCCTAAAAGTAAGAGCAAGGTGGTATTGTGCAGCTGATGATGCTTTCCTTTGCCATGGCTGTGACAACATGGTTCACTCAGCAAACCAATTAGCAAGCAGACACGAAAGGGTGAAGCTTCAAACTGCATCCTCCAAGGTCAACTACTCAGTGACCCCTAAGGTAGCATGGCACAGTGGATTCACACGCAAGGCAAGAACCCCTCGCAGCAACAACAAGCACTCATCGCTGCAACAACAACAACAAAAACCATTACATGAAGAACAAGGAGAAGAAGAAGAAGTGTTTTTCAATAACACCATCATTAGTGTTCAACCCCTTGTGCCTGAGCTTGGAAGTGAAGAGCCATTGCTTAATGATGAGACCGAGGAGCAACTCCTGTGTCGCGTGCCCGTATTTGATGCTGAGCTTTGTAGCATATACAATGAAGTGAAGGACGAGGTTAATGTAGCTGGTGGTGAAGTAGCCTTTGACTTGGAAAACTTTTCTTCTGAGTTTCTACCAACAGATATGGATCTTGCTGAGTTTTCTGCTGATGTGGAAAGCTTACTTGGAAACGGGGTTGATGAGGATTCACCTGTGAAGAAAGGATCAGAACTAGTGCTTCTTGATTGCAAAGAAGAAGGAGATGATGAAATGGATGCATGTGTTAATGGAATTGGAGCCAACAAAGATGCAATGGTTAAGGTCAAAGATGAAGAAGAACTTGATGCTGATGATGACACAGCTTGCCATTTGGATTCGATTCTTGACATGAATAGCGAGGCCTTTAATTGGAATATTGCTGAGTCAGAGTCACCTGCACAGGCACAAGAAGATGAAGTGAGTAAAGTGGGAACCAATAAGAAGGACATATTTTTGAGGCTAAACTATGAAGAAGTCATTACTGCTTGGGCAAGTCAAGGTTCTCCATGGACTACAGGAACCCCACCTAAGTTCTTCAACTCCGATGATTGCTGGCTAGACTTGTTTTCTTATAGTATCATAGCCGATCTCATATATATCTGGCTAAAGGAGGAAGGTTGTGTTGCGTCTTCAGTAACCGATGTAAAATTCGTCGATATACCTGAAATCATTCGTAGGGCGGAGATGTGTTATGCCTTCGGTAACCAATGCAAAGGTTCGAATGGTGGGGGTGTTCAATGCTATTATGGGGAAGTGAGAAGCTTAAGAGTGCATGCAGATGGGGGAAGAGAAGCAAGAGTGTCAAGGTACCGAGAGAAGAGAAGAACGCGTTTATTTGCAAAGAAGATAAGGTATGAAGTGAGGAAGTTAAACGCGGAGAAAAGACCTAGAATGAAAGGTCGATTTGTGAAGAGTGTTCCTTTGTTGGAGCCACTGCTTTGCCAGCTTAATTATCAATCATCACCACTGACATGA

>Glyma.09g184600.2 sequence-type=CDS polypeptide=Glyma.09g184600.2.p locus=Glyma.09g184600 ID=Glyma.09g184600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACCAACGAAATGAAAGAAGCAAGTGCCTTAGGAGCTAGAACAGCACGAGCATGCGAGAGCTGCCTAAAAGTAAGAGCAAGGTGGTATTGTGCAGCTGATGATGCTTTCCTTTGCCATGGCTGTGACAACATGGTTCACTCAGCAAACCAATTAGCAAGCAGACACGAAAGGGTGAAGCTTCAAACTGCATCCTCCAAGGTCAACTACTCAGTGACCCCTAAGGTAGCATGGCACAGTGGATTCACACGCAAGGCAAGAACCCCTCGCAGCAACAACAAGCACTCATCGCTGCAACAACAACAACAAAAACCATTACATGAAGAACAAGGAGAAGAAGAAGAAGTGTTTTTCAATAACACCATCATTAGTGTTCAACCCCTTGTGCCTGAGCTTGGAAGTGAAGAGCCATTGCTTAATGATGAGACCGAGGAGCAACTCCTGTGTCGCGTGCCCGTATTTGATGCTGAGCTTTGTAGCATATACAATGAAGTGAAGGACGAGGTTAATGTAGCTGGTGGTGAAGTAGCCTTTGACTTGGAAAACTTTTCTTCTGAGTTTCTACCAACAGATATGGATCTTGCTGAGTTTTCTGCTGATGTGGAAAGCTTACTTGGAAACGGGGTTGATGAGGATTCACCTGTGAAGAAAGGATCAGAACTAGTGCTTCTTGATTGCAAAGAAGAAGGAGATGATGAAATGGATGCATGTGTTAATGGAATTGGAGCCAACAAAGATGCAATGGTTAAGGTCAAAGATGAAGAAGAACTTGATGCTGATGATGACACAGCTTGCCATTTGGATTCGATTCTTGACATGAATAGCGAGGCCTTTAATTGGAATATTGCTGAGTCAGAGTCACCTGCACAGGCACAAGAAGATGAAGTGAGTAAAGTGGGAACCAATAAGAAGGACATATTTTTGAGGCTAAACTATGAAGAAGTCATTACTGCTTGGGCAAGTCAAGGTTCTCCATGGACTACAGGAACCCCACCTAAGTTCTTCAACTCCGATGATTGCTGGCTAGACTTGTTTTCTTATAGTATCATAGCCGATCTCATATATATCTGGCTAAAGGAGGAAGGTTGTGTTGCGTCTTCAGTAACCGATGTAAAATTCGTCGATATACCTGAAATCATTCGTAGGGCGGAGATGTGTTATGCCTTCGGTAACCAATGCAAAGGTTCGAATGGTGGGGGTGTTCAATGCTATTATGGGGAAGTGAGAAGCTTAAGAGTGCATGCAGATGGGGGAAGAGAAGCAAGAGTGTCAAGGTACCGAGAGAAGAGAAGAACGCGTTTATTTGCAAAGAAGATAAGGTATGAAGTGAGGAAGTTAAACGCGGAGAAAAGACCTAGAATGAAAGGTCGATTTGTGAAGAGTGTTCCTTTGTTGGAGCCACTGCTTTGCCAGCTTAATTATCAATCATCACCACTGACATGA

>Glyma.09g184600.3 sequence-type=CDS polypeptide=Glyma.09g184600.3.p locus=Glyma.09g184600 ID=Glyma.09g184600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACCAACGAAATGAAAGAAGCAAGTGCCTTAGGAGCTAGAACAGCACGAGCATGCGAGAGCTGCCTAAAAGTAAGAGCAAGGTGGTATTGTGCAGCTGATGATGCTTTCCTTTGCCATGGCTGTGACAACATGGTTCACTCAGCAAACCAATTAGCAAGCAGACACGAAAGGGTGAAGCTTCAAACTGCATCCTCCAAGGTCAACTACTCAGTGACCCCTAAGGTAGCATGGCACAGTGGATTCACACGCAAGGCAAGAACCCCTCGCAGCAACAACAAGCACTCATCGCTGCAACAACAACAACAAAAACCATTACATGAAGAACAAGGAGAAGAAGAAGAAGTGTTTTTCAATAACACCATCATTAGTGTTCAACCCCTTGTGCCTGAGCTTGGAAGTGAAGAGCCATTGCTTAATGATGAGACCGAGGAGCAACTCCTGTGTCGCGTGCCCGTATTTGATGCTGAGCTTTGTAGCATATACAATGAAGTGAAGGACGAGGTTAATGTAGCTGGTGGTGAAGTAGCCTTTGACTTGGAAAACTTTTCTTCTGAGTTTCTACCAACAGATATGGATCTTGCTGAGTTTTCTGCTGATGTGGAAAGCTTACTTGGAAACGGGGTTGATGAGGATTCACCTGTGAAGAAAGGATCAGAACTAGTGCTTCTTGATTGCAAAGAAGAAGGAGATGATGAAATGGATGCATGTGTTAATGGAATTGGAGCCAACAAAGATGCAATGGTTAAGGTCAAAGATGAAGAAGAACTTGATGCTGATGATGACACAGCTTGCCATTTGGATTCGATTCTTGACATGAATAGCGAGGCCTTTAATTGGAATATTGCTGAGTCAGAGTCACCTGCACAGGCACAAGAAGATGAAGTGAGTAAAGTGGGAACCAATAAGAAGGACATATTTTTGAGGCTAAACTATGAAGAAGTCATTACTGCTTGGGCAAGTCAAGGTTCTCCATGGACTACAGGAACCCCACCTAAGTTCTTCAACTCCGATGATTGCTGGCTAGACTTGGGTTCGAATGGTGGGGGTGTTCAATGCTATTATGGGGAAGTGAGAAGCTTAAGAGTGCATGCAGATGGGGGAAGAGAAGCAAGAGTGTCAAGGTACCGAGAGAAGAGAAGAACGCGTTTATTTGCAAAGAAGATAAGGTATGAAGTGAGGAAGTTAAACGCGGAGAAAAGACCTAGAATGAAAGGTCGATTTGTGAAGAGTGTTCCTTTGTTGGAGCCACTGCTTTGCCAGCTTAATTATCAATCATCACCACTGACATGA

>Glyma.09g184600.1.p sequence-type=predicted peptide transcript=Glyma.09g184600.1 locus=Glyma.09g184600 ID=Glyma.09g184600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTNEMKEASALGARTARACESCLKVRARWYCAADDAFLCHGCDNMVHSANQLASRHERVKLQTASSKVNYSVTPKVAWHSGFTRKARTPRSNNKHSSLQQQQQKPLHEEQGEEEEVFFNNTIISVQPLVPELGSEEPLLNDETEEQLLCRVPVFDAELCSIYNEVKDEVNVAGGEVAFDLENFSSEFLPTDMDLAEFSADVESLLGNGVDEDSPVKKGSELVLLDCKEEGDDEMDACVNGIGANKDAMVKVKDEEELDADDDTACHLDSILDMNSEAFNWNIAESESPAQAQEDEVSKVGTNKKDIFLRLNYEEVITAWASQGSPWTTGTPPKFFNSDDCWLDLFSYSIIADLIYIWLKEEGCVASSVTDVKFVDIPEIIRRAEMCYAFGNQCKGSNGGGVQCYYGEVRSLRVHADGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKSVPLLEPLLCQLNYQSSPLT*

>Glyma.09g184600.2.p sequence-type=predicted peptide transcript=Glyma.09g184600.2 locus=Glyma.09g184600 ID=Glyma.09g184600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTNEMKEASALGARTARACESCLKVRARWYCAADDAFLCHGCDNMVHSANQLASRHERVKLQTASSKVNYSVTPKVAWHSGFTRKARTPRSNNKHSSLQQQQQKPLHEEQGEEEEVFFNNTIISVQPLVPELGSEEPLLNDETEEQLLCRVPVFDAELCSIYNEVKDEVNVAGGEVAFDLENFSSEFLPTDMDLAEFSADVESLLGNGVDEDSPVKKGSELVLLDCKEEGDDEMDACVNGIGANKDAMVKVKDEEELDADDDTACHLDSILDMNSEAFNWNIAESESPAQAQEDEVSKVGTNKKDIFLRLNYEEVITAWASQGSPWTTGTPPKFFNSDDCWLDLFSYSIIADLIYIWLKEEGCVASSVTDVKFVDIPEIIRRAEMCYAFGNQCKGSNGGGVQCYYGEVRSLRVHADGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKSVPLLEPLLCQLNYQSSPLT*

>Glyma.09g184600.3.p sequence-type=predicted peptide transcript=Glyma.09g184600.3 locus=Glyma.09g184600 ID=Glyma.09g184600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTNEMKEASALGARTARACESCLKVRARWYCAADDAFLCHGCDNMVHSANQLASRHERVKLQTASSKVNYSVTPKVAWHSGFTRKARTPRSNNKHSSLQQQQQKPLHEEQGEEEEVFFNNTIISVQPLVPELGSEEPLLNDETEEQLLCRVPVFDAELCSIYNEVKDEVNVAGGEVAFDLENFSSEFLPTDMDLAEFSADVESLLGNGVDEDSPVKKGSELVLLDCKEEGDDEMDACVNGIGANKDAMVKVKDEEELDADDDTACHLDSILDMNSEAFNWNIAESESPAQAQEDEVSKVGTNKKDIFLRLNYEEVITAWASQGSPWTTGTPPKFFNSDDCWLDLGSNGGGVQCYYGEVRSLRVHADGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKSVPLLEPLLCQLNYQSSPLT*







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