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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G62830.1 | AT | LSD1-like 1 | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0003677 | GO-mf | DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| KOG0029 | KOG | Amine oxidase | JGI | N/A | IEA |
| PTHR10742 | Panther | AMINE OXIDASE | JGI | N/A | IEA |
| PTHR10742:SF30 | Panther | POLYAMINE OXIDASE 1 | JGI | N/A | IEA |
| PF01593 | PFAM | Flavin containing amine oxidoreductase | JGI | N/A | IEA |
| PF04433 | PFAM | SWIRM domain | JGI | N/A | IEA |
| PWY-6441 | SoyCyc9 | spermine and spermidine degradation III | Plant Metabolic Network | ISS | |
| GN7V-60836 | SoyCyc9-rxn | Enzyme name not determined | Plant Metabolic Network | ISS |
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| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.07g090100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma09g31770 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.09g185800.1 sequence-type=CDS polypeptide=Glyma.09g185800.1.p locus=Glyma.09g185800 ID=Glyma.09g185800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCTTATAATCAGGATCGATGTTATATATGGGAGGATATGAATTTGTATATGTCATCATTCAAAAGAATCATATACGGGTCAGGCAGTCAAAGAAATTTAATACTTGTATCATCCAAAAACAAAATTATTGAAAGATCGGCATCCATGAGTGACAGCACCAACACAAACCCCCCACCACCTCCGGTGGCGGAGCCACCGCCACCACCGCAATCCGGTTCACCGGAAAACGACGTCGCAATGTCCCCCCAAAACTCCTCCGAGGACCCAGACTCCTCCCTCCCCACCCAAACAACACCCGAGCCCGCCGTTCCAGACTCCCCGGACTCCGCCACAACCCGACCCGACCCGAATCCTCCGCCTCGAAAACGCCGCCGCCGCAAGAAATTCTTCACGGAACTCACCACCGGGCCATCCACGCGCCGAAACGACGTCGCCAAGGACTGTGACGTGGAAGCCCTAATCGCGATCTCGGTAGGGTTTCCCGTGGATTCCTTAACCGAAGAAGAGATCGAAGCGAACGTGGTTTCCACCGTCGGAGGCTCCGAGCAATCCAACTACATCGTCGTCCGAAACCACATATTGGCGCGTTGGCGTTCCAACGTTTCGGTCTGGTTAACCCATGACCGGGCCCTCCGGTCGATCCGGTCCGAGCACAAGGGTTTGGTCGAAACCGCTTACCGGTTCCTGCTGGAGCACGGTTACATTAACTTCGGCCTCGCGCAGGAGATCCAAACCCTAAAGCTGAAACCTTTCGATGGGTCCGACCGAGGAACGGTGATTGTGATCGGTGCTGGGTTCGCGGGTTTGGTTGCGGCGAGACAATTGGTGTTCATGGGGTTTAAAGTTGTGATTTTGGAAGGTAGGACCCGACCCGGTGGGAGGGTTAAGACTAAGAAGATGAGTGGTGATGGGGTTGAGGCTGCAGCGGATTTCGGTGGAAGTGTCCTCACTGGAATAAACGGGAACCCTCTTGGGGTTCTTGCTAGACAATTGGGTTTGCCTTTGCATAAGGTTAGGGATATTTGTCCTCTCTATTTGCCTGATGGGAGGAGTGTTGACTCTGAGGTTGACTCTAGGGTTGAGGTTTCGTTTAACAAGCTGCTGGAGAGGGTTTGTAAGCTTAGGCAGGCGATGATCGAGGAGGTGAAGTCGGTGGACGTGCCCTTGGGGACGGCGTTGGAGGCTTTCCGAAGGGTTTATATGGTGGCTGAGGATAAGGAGGAGAGGATGTTGCTGAATTGGCACCTCGCGAATTTGGAGTATGCGAATGCGACGCTCATGTCAAATTTGTCAATGGCGTACTGGGATCAGGATGATCCCTATGAGATGGGTGGTGATCATTGCTTCATTCCTGGGGGGAATGAGAAATTTGTTCGCGCTTTGGCCGAGGATTTGCCAATTTTCTATGGGAGGACTGTGGAGTGTGTCAAGTATGGGAGTGACGGGGTGCTGGTTTATGCTGGTGGGCAGGAGTTTAGGGGGGGCATGGTGCTGTGTACTGTGCCGTTGGGGGTGCTAAAGAAGGGAGATATTGAGTTTGTGCCGGAGCTTCCTCAGAGGAAGAAGGATGCTATTCATAGGTTGGGGTTTGGGTTGTTGAACAAGGTTGCAATATTGTTTCCTTATAATTTCTGGGGTGGGGACATTGACACGTTTGGTCATTTGACCGAGGATTTGAGTATGAGAGGGGAGTTTTTTCTGTTCTATAGCTACTCCTCGGTGTCTGGGGGCCCGCTTCTGGTTGCGCTTGTTGCTGGGGAGGCTGCGATTAGGTTTGAAATGATGTCACCAGTGGAGTCTGTGAAGAGGGTGTTGGACATTCTGAAGAATATTTTTAATCCGAAGGGGATTGTTGTTCCGGATCCAGTTCAGGCCGCGTGTACTCGGTGGGGGAAGGATCACTTTGCGTATGGATCTTACTCTTATGTTGCAGTTGGATCTTCAGGAGACGATTATGATATTCTTGCAGAGAGTGTTGGAGATGGGACAGTGTTCTTTGCTGGAGAGGCGACTAGCAAGCAGTATCCTGCAACTATGCACGGGGCGTTTCTCAGTGGAATGAGAGAGGCCGCAAACATTTTGAGAGTGGCAAAGAGGAGGTCTTCAATGCCTATTGACACATCAAAAAGTGTCAACCAGGAGAATGATGATTTGAACAAATTGTTTGTGAAACCTGATCTGACATTTGGGAGCTTCTCTGCCTTGTTTGATCCAAATTTGAATGATCTTGATTCCAGTTCATTACTGAGGGTTAAAATTGGAGGAGCTGTGTTGGACTCTGGCAGTCTTTATCTCTATGCCTTGCTTCCAAAGAAGTGGGTCATTGAGTTGAGTCAGTTGGAGGGAGATGAGAACAGGATGAGAATGTTAAACCGCAATTTCGGGGTGAGTTTGGTTGGGAGGAAGGGTTTAAGTAGTGCTGCTGAATCTCTTATTGCCAGCATAAAACTGTCTAGACCCAACTTAAATGAAGCGGAAAATGGTCTTATTATGACTGGGAAGGAAAACTCGCAGTAG
>Glyma.09g185800.1.p sequence-type=predicted peptide transcript=Glyma.09g185800.1 locus=Glyma.09g185800 ID=Glyma.09g185800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSYNQDRCYIWEDMNLYMSSFKRIIYGSGSQRNLILVSSKNKIIERSASMSDSTNTNPPPPPVAEPPPPPQSGSPENDVAMSPQNSSEDPDSSLPTQTTPEPAVPDSPDSATTRPDPNPPPRKRRRRKKFFTELTTGPSTRRNDVAKDCDVEALIAISVGFPVDSLTEEEIEANVVSTVGGSEQSNYIVVRNHILARWRSNVSVWLTHDRALRSIRSEHKGLVETAYRFLLEHGYINFGLAQEIQTLKLKPFDGSDRGTVIVIGAGFAGLVAARQLVFMGFKVVILEGRTRPGGRVKTKKMSGDGVEAAADFGGSVLTGINGNPLGVLARQLGLPLHKVRDICPLYLPDGRSVDSEVDSRVEVSFNKLLERVCKLRQAMIEEVKSVDVPLGTALEAFRRVYMVAEDKEERMLLNWHLANLEYANATLMSNLSMAYWDQDDPYEMGGDHCFIPGGNEKFVRALAEDLPIFYGRTVECVKYGSDGVLVYAGGQEFRGGMVLCTVPLGVLKKGDIEFVPELPQRKKDAIHRLGFGLLNKVAILFPYNFWGGDIDTFGHLTEDLSMRGEFFLFYSYSSVSGGPLLVALVAGEAAIRFEMMSPVESVKRVLDILKNIFNPKGIVVPDPVQAACTRWGKDHFAYGSYSYVAVGSSGDDYDILAESVGDGTVFFAGEATSKQYPATMHGAFLSGMREAANILRVAKRRSSMPIDTSKSVNQENDDLNKLFVKPDLTFGSFSALFDPNLNDLDSSSLLRVKIGGAVLDSGSLYLYALLPKKWVIELSQLEGDENRMRMLNRNFGVSLVGRKGLSSAAESLIASIKLSRPNLNEAENGLIMTGKENSQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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