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Report for Sequence Feature Glyma.09g256800

Feature Type:gene_model
Chromosome:Gm09
Start:47598004
stop:47598784
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g256800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G61460.1AT brassinosteroid-responsive RING-H2 JGI N/AIEA
GO:0016567GO-bp protein ubiquitination EnsemblGenomesN/AIEA
GO:0043161GO-bp proteasome-mediated ubiquitin-dependent protein catabolic process EnsemblGenomesN/AIEA
GO:0005680GO-cc anaphase-promoting complex JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0004842GO-mf ubiquitin-protein ligase activity JGI N/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0046872GO-mf metal ion binding JGI N/AIEA
GO:0061630GO-mf ubiquitin protein ligase activity EnsemblGenomesN/AIEA
PTHR22764Panther RING FINGER DOMAIN-CONTAINING JGI N/AIEA
PTHR22764:SF27Panther JGI N/AIEA
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI N/AIEA

Expression Patterns of Glyma.09g256800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g256800
ParalogEvidenceComments
Glyma.18g235600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g256800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g39280 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.09g256800
>Glyma.09g256800.1 sequence-type=CDS polypeptide=Glyma.09g256800.1.p locus=Glyma.09g256800 ID=Glyma.09g256800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTTTTCCCGTAGGGTACCCGGAGCTCCTGGTTCCGAAAATGTTCCTCCACGCGCTTTCCTTCCTCGCGTGGCTCCGCTCCCTCGTTTTCGCCCTCTTCCGCCTCCTCCGCATCTCCGACCTCCTCGACACTGAACCTTCCCCCTCCGACCTCCCTCCGCCGGCTCCGCCGCGCGAGCCGACGCTATCCGCACTTCTCATCCGAGAGTTTCTCCCCGTGGCCGCCTTCCGCGACCTCGCCAGCGCCTCCGGAGTAGATCCTCCTCCGTCGGGATGCGCCGTGTGCCTGAGCGAGTTTTCCGAAGAAGAGGAAATCCGGTGCATGGCGAACTGCAAGCACATTTTCCACTGCGCGTGCGTGGACCGTTGGATCGATCACGATCAGAAGACGTGTCCGCTGTGCAGAAGTACGTTGGTGCCACATCAGAAGCTCGAAGAATACAACCAGCGACTATGGGCGGCTTCTGGAGTTTCGCAGTTTTATTACCAAGACGATTACACGGCTTCCCTCTGA
Predicted protein sequences of Glyma.09g256800
>Glyma.09g256800.1.p sequence-type=predicted peptide transcript=Glyma.09g256800.1 locus=Glyma.09g256800 ID=Glyma.09g256800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGFPVGYPELLVPKMFLHALSFLAWLRSLVFALFRLLRISDLLDTEPSPSDLPPPAPPREPTLSALLIREFLPVAAFRDLASASGVDPPPSGCAVCLSEFSEEEEIRCMANCKHIFHCACVDRWIDHDQKTCPLCRSTLVPHQKLEEYNQRLWAASGVSQFYYQDDYTASL*






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