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Report for Sequence Feature Glyma.09g277400

Feature Type:gene_model
Chromosome:Gm09
Start:49277538
stop:49281994
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g277400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G62640.1AT 3-ketoacyl-acyl carrier protein synthase III JGI N/AIEA
GO:0006633GO-bp fatty acid biosynthetic process EnsemblGenomesN/AIEA
GO:0006633GO-bp fatty acid biosynthetic process JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008610GO-bp lipid biosynthetic process JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0004315GO-mf 3-oxoacyl-[acyl-carrier-protein] synthase activity EnsemblGenomesN/AIEA
GO:0004315GO-mf 3-oxoacyl-[acyl-carrier-protein] synthase activity JGI N/AIEA
GO:0016746GO-mf transferase activity, transferring acyl groups JGI N/AIEA
GO:0016747GO-mf transferase activity, transferring acyl groups other than amino-acyl groups JGI N/AIEA
PTHR11877Panther HYDROXYMETHYLGLUTARYL-COA SYNTHASE JGI N/AIEA
PTHR11877:SF13Panther HYDROXYMETHYLGLUTARYL-COA SYNTHASE A JGI N/AIEA
PF08541PFAM 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JGI N/AIEA
PF08545PFAM 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JGI N/AIEA
PWY-4381SoyCyc9 fatty acid biosynthesis initiation I Plant Metabolic Network ISS
PWY-5156SoyCyc9 superpathway of fatty acid biosynthesis II (plant) Plant Metabolic Network ISS
GN7V-50614SoyCyc9-rxn β-ketoacyl-acyl-carrier-protein synthase III Plant Metabolic Network ISS

Proteins Associated with Glyma.09g277400
LocusGene SymbolProtein Name
KASIII-1 beta-ketoacyl-ACP synthetase 3 gene 1

Expression Patterns of Glyma.09g277400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g277400
ParalogEvidenceComments
Glyma.18g211400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g277400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g41380 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.09g277400
>Glyma.09g277400.1 sequence-type=CDS polypeptide=Glyma.09g277400.1.p locus=Glyma.09g277400 ID=Glyma.09g277400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGAATGCATCTGGGTTCTTCACCCCTTCGGTTCCCCACTTCAAAGTGAGGGTTAAGCCTCTCAACACTGCCATTGGATTCTCCGCCAAAGTGGTTTGCTTTGGAAACATCGAAGGAGCTGAAAAACATGCTTCCACCGTTTCCCCTTCTTCCCAATCTCCAATACCCAGGCTTGTCAGCAAAGGGTGCAAGTTAGTTGGATGTGGCTCTGCTGTGCCAGCTCTTCAGATTTCCAATGACGACCTTTCGAAAATGGTTGATACTAATGATGAATGGATATCTGTTCGCACCGGAATTCGTAGACGACGAGTTCTTTCAGGCAAAGATAACTTGACAAGTTTAGCAGTAGAGGCAGCTAGGAAAGCTCTTGAGATGGCAAAGGTAGACCCTGATGATCTTGACCTAATATTGATGTGCACATCTACGCCAGAGGATCTTTTTGGTAGTGCTCCACAGATTCAAAAACAGCTTGGCTGCAAAACAAATCCATTGTCTTATGACATTACAGCTGCATGTAGTGGATTTGTGTTGGGTTTAATATCAGCTGCTTGCCACATTAGGGGAGGTGGGTTTAATAATGTTCTAGTTATTGGGGCGGATGCTCTTTCACGATATGTTGATTGGACAGACAGAGGGACCTGTATTCTTTTTGGGGATGCTGCTGGTGCTGTACTAGTACAGGCCTGCAACAGTGAAGAAGATGGTTTATTTGGTTTTGATTTGCATAGTGATGGCAGTGGTCAAAGGCACTTGAATGCTTCCATTAAAGAAAACGAGTCAAATAATGCATTGGATTCAAATGGTTCTGTGGTTGGCTTTCCTCCCAAGCAGTCCTCATATTCATGCATTCAAATGAATGGCAAAGAAGTCTTTCGCTTTGCTGTACGATGTGTGCCACAGTCAATTGAATCTGCTCTTCAAAAGGCTGGTCTCCCTGCATCTAGCATTGATTGGCTACTTCTCCATCAGGCAAACCAGAGGATTATTGACGCAGTTGCCACTCGGTTAGAACTCCCCTCAGAACGTGTGATATCAAATTTGGCCAATTATGGTAACACAAGTGCAGCTTCCATTCCCTTGGCTTTAGATGAAGCGGTTCGAAGCGGTAAGGTTAAGGCAGGCCAGACTATTGCAACGGCTGGCTTCGGTGCTGGTCTTACTTGGGGTTCAGCAATTCTTCGTTGGGGCTGA
Predicted protein sequences of Glyma.09g277400
>Glyma.09g277400.1.p sequence-type=predicted peptide transcript=Glyma.09g277400.1 locus=Glyma.09g277400 ID=Glyma.09g277400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MANASGFFTPSVPHFKVRVKPLNTAIGFSAKVVCFGNIEGAEKHASTVSPSSQSPIPRLVSKGCKLVGCGSAVPALQISNDDLSKMVDTNDEWISVRTGIRRRRVLSGKDNLTSLAVEAARKALEMAKVDPDDLDLILMCTSTPEDLFGSAPQIQKQLGCKTNPLSYDITAACSGFVLGLISAACHIRGGGFNNVLVIGADALSRYVDWTDRGTCILFGDAAGAVLVQACNSEEDGLFGFDLHSDGSGQRHLNASIKENESNNALDSNGSVVGFPPKQSSYSCIQMNGKEVFRFAVRCVPQSIESALQKAGLPASSIDWLLLHQANQRIIDAVATRLELPSERVISNLANYGNTSAASIPLALDEAVRSGKVKAGQTIATAGFGAGLTWGSAILRWG*






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