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Report for Sequence Feature Glyma.09g278500

Feature Type:gene_model
Chromosome:Gm09
Start:49384135
stop:49397229
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.09g278500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G08850.1AT HEAT repeat ;WD domain, G-beta repeat protein protein JGI N/AIEA
GO:0008361GO-bp regulation of cell size EnsemblGenomesN/AIEA
GO:0009267GO-bp cellular response to starvation EnsemblGenomesN/AIEA
GO:0010506GO-bp regulation of autophagy EnsemblGenomesN/AIEA
GO:0030307GO-bp positive regulation of cell growth EnsemblGenomesN/AIEA
GO:0031929GO-bp TOR signaling EnsemblGenomesN/AIEA
GO:0071230GO-bp cellular response to amino acid stimulus EnsemblGenomesN/AIEA
GO:0071902GO-bp positive regulation of protein serine/threonine kinase activity EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0031931GO-cc TORC1 complex EnsemblGenomesN/AIEA
GO:0005488GO-mf binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0030674GO-mf protein binding, bridging EnsemblGenomesN/AIEA
KOG1517 KOG Guanine nucleotide binding protein MIP1 JGI N/AIEA
PTHR12848Panther FAMILY NOT NAMED JGI N/AIEA
PTHR12848:SF5Panther JGI N/AIEA
PF00400PFAM WD domain, G-beta repeat JGI N/AIEA

Expression Patterns of Glyma.09g278500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.09g278500
ParalogEvidenceComments
Glyma.18g210300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.09g278500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma09g41510 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.09g278500
>Glyma.09g278500.1 sequence-type=CDS polypeptide=Glyma.09g278500.1.p locus=Glyma.09g278500 ID=Glyma.09g278500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATTGGGAGATTTGATGGCCTCTCGCTTTTCCCAATCCACAGTTCTCGTCGTTCCCACCTCTCACAACCACCTCGACGATTCCACCACCGCCTCCTCTTCCTCCTCTGCTGCCGCCGCCGTCGCCGCTCTTAACAACAACAGCAGCAGCAACGACGACGCCGATTTCGCGCACCGCCGCGACTCTGAAGCCGCCATCGCCATCATTAGCAGCGGCAACTACGCCGGGAATGCCGCCACCAGCATGGCCTACCTGCCCCACACCGTCGTCCTGTGCGAGCTCCGCCACGACGCCTTCGAGGCCGCCGTCCCCGCCGGCCCCTCCGACAGCGGCCTCGTCTCCAAGTGGCGACCTAAGGACAGAATGAAGACAGGATGTGTAGCTCTAGTATTATGTTTAAACATTAGTGTCGATCCACCAGATGTAATAAAGATATCCCCTTGTGCCAGAATGGAGTGCTGGATAGATCCTTTTTCTATGGCACCGCAAAAGGCATTGGAGTCAATTGGAAAAACTTTGAGCAGTCAGTATGAAAGATGGCAACCAAAGGCCCGCTATAAATGTCAACTTGATCCGACAGTGGATGAGGTGAAGAAGCTTTGTACTACTTGTCGTAAATATGCAAAGTCGGAAAGAGTTTTATTCCATTACAATGGGCATGGTGTGCCAAAACCAACTGCTAATGGTGAAATTTGGGTCTTCAATAAGAGTTATACACAGTATATTCCCTTACCTATCAATGAACTTGATTCCTGGCTGAAGACCCCATCAATTTATGTTTTTGATTGCTCTGCGGCTGGGATGATTGTGAATTCCTTCATTGAGCTTCATGAGTGGAGTGCTTCCAACTCCTCTGTGTCCCAAAGGGATTGCATTCTGCTTGCAGCATGTGAAGCACATGAGACTTTGCCTCAGAGTGCAGAATTCCCAGCTGATGTATTTACATCTTGCCTTACAACACCTATAAAGATGGCATTGCGATGGTTTTGTACTCGTTCATTACTTCGTGAATCACTTGATTATTCACTTATAGACAAGATCCCTGGCCGTCCAAATGACCGAAAGACACTTCTGGGTGAATTGAATTGGATCTTTACAGCCGTAACTGATACGATTGCCTGGAATGTTCTTCCTCATGATCTTTTTCAGAGACTGTTCAGACAGGATTTGCTTGTTGCAAGTCTGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCCTGTCTCTCACCCAATGTTACCTCCGACCCATCAGCATCATATGTGGGATGCATGGGACATGGCTGCTGAGCTCTGCCTCTCTCAACTTCCGTCTTTAGTTGAGGATCCTAATGCTGAATTTCAGCCTAGTACATTTTTCACTGAGCAGTTGACAGCATTTGAGGTATGGCTTGACCATGGTTCTGAACATAAGAAACCACCAGAACAGTTGCCTATAGTTCTTCAGGTTTTACTTAGTCAATGCCATCGGTTTCGGGCTTTAGTACTCCTTGGAAGGTTCCTTGATATGGGGCCATGGGCAGTAGATCTGGCATTATCTGTTGGAATATTTCCATATGTTCTAAAGCTGTTACAAACAACAACACCCGAACTACGCCAGATCCTTGTATTCATATGGACAAAGATTCTTGCACTTGACAAGTCATGTCAGGTTGATCTAGTGAAGGATGGCGGTCATATCTATTTTATTAAGTTTCTTGATAGCATGGAAGCATATCCAGAGCAACGTGCAATGGCTGCTTTTGTTTTGGCTGTGATTGTGGATGGTCATAGACGAGGCCAAGAAGCTTGTATTGAAGCTGGTTTAATTCATGTCTGCTTAAAGCACCTTCAGAGTTCATGTCCTAATGATTCACAAACTGAACCCCTTTTCCTTCAGTGGCTTTGCCTGTGTCTGGGGAAATTGTGGGAAGACTTTTCAGAGGCACAAACAATCGGTTTGCAGGAAGATGCCACTACTATATTTGCTCCTCTACTGTCTGAACCCCAGCCAGAGGTTAGGGCATCTGCTGTTTTTGCACTAGGCACCCTTCTTGATGTGGGGTTTGATTCATGTAGAAGTGTTGGTGGAGATGAAGAATGTGATGATGATGATAAGTTTAGGGCTGAAGTTAGTATAGTTAAGAGTATGTTAGATGTTGCTTCAGATGGGAGTCCATTGGTGAGGGCAGAGGTAGCAGTGGCTCTAGCACGATTTGCTTTTGGCCACAACAAGCACCTGAAATCTATTGCTGCTGCATATTGGAAGCCTCAAGCTAATTCTTTGATTAATTCCTTACCTTCGTTGACTAATATAAAAGGTTCGGTTGGTGGATATGCTAAACAGAACCAACACATGCCTCATGGAAGTATTGTTTCTCCTCAAATTGGTCCTATCAGGGTTGGAAATGACAACTCTCCAGTGGTTCGAGATGGCCGCGTCTCTTCTAGCAGTCCTCTCGCTGGTTCAGGAATCATGCATGGGTCCCCATTGTCTGATGATTCATCTCATCATTCTGATTCAGGAATTCTGAATGATGGTTTCAGCAATGGAGTGGCTAACCACACTGGACCAAAGCCCTTTGACAATGCATTGTATTCACAATGTGTACTTGCTATGTGTACTTTGGCAAAGGATCCATCTCCACGCATTGCAAATCTTGGTCGCCGGGTACTGTCCATAATAGGTATTGAACAAGTGGTTGCAAAACCATTGAAGTCTAGTGGTGTTCGGACTGCTGAATCTACAGCTTCTCCACTGGCTCGTTCATCTTCTTGGTTTGACATGAATGGAGGACACTTGCCTCTGACCTTCAGAACTCCTCCAGTCAGTCCTCCTCGCCCAAGTTATATAACTCGAATGCGTCGAGTTTGTTCATTGGAGTTTAGGCCCCACCTGATGGATTCTCCAGACTCAGGATTAGCTGATCCACTCTTAGGTTCTGGTGGAGCTTCTGGGACTTCAGATCGAAGCTTTCTTCCACAATCAACTATATATAGTTGGAGTTGTGGGCACTTTTCCAAACCACTTTTAACTGCTGCAGATGATAGCGAAGAGGTATCAGCCAGAAGAGAAGAGAGGGAAAAATTTGCATTGGAGCACATAGCAAAATGCCAGCACTCTGCTGTTAGCAGGCTAACAAATCCAATTGCTAAATGGGACATAAAGGGTACACAAACAGCATTGCTGCAACCTTTCTCTCCTATAGTGATAGCTGCTGATGAGAATGAACGTATCAGGATATGGAACCATGAGGAGGCAACACTACTGAACAGTTTTGATAATCATGATTTTCCTGACAAAGGAATTTCTAAGCTCTGCCTTGTAAATGAGCTTGATGAGAGCTTGCTTCTTGCTGCTTCATCTGATGGAAACATTCGGATTTGGAAAGATTATACTCTGAGGGGTAAACAAAAACTTGTCACTGCATTCTCTTCAATTCATGGTCATAAACCTGGTGTGAGGAATCTGAATGCAGTTGTTGATTGGCAACAACAATGTGGTTATCTGTATGCATCGGGTGAGATATCATCTATTATGCTATGGGATGTTGATAAAGAGCAGCTTGTCAATTCTAAATCTTCATCATCAGATTGCAGTGTCTCAGCATTGGCTGCATCTCAAGTTCATGGGGGACAATTTACAGCTGGTTTCATAGATGGTTCTGTCCGACTTTATGATGTCAGAACACCTGATATGCTCGTTTGTGGATTAAGGCCTCATACACAAAGAGTAGAAAAGGTTGTGGGGATTGGCTTTCAGCCTGGATTAGACCAAGGAAAGATTGTTAGCGCTTCTCAGGCTGGGGATATCCAATTTCTTGATATAAGAAATCATAGCAGTGCCTATCTTACTATTGAAGCTCATAGGGGTTCACTCACAGCTTTAGCAGTACATAGACATGCCCCAATTATTGCCAGTGGTTCAGCGAAACAACTCATTAAGGTCTTTAGCCTGGAGGGTGATCAACTAGGCACCATTCGATACTATCCTACCCTAATGGCCCAGAAAATTGGTTCTGTAAGCTGCCTCAATTTCCATCCATACCAAGTATTACTTGCTGCTGGTGCTGCAGATGCATGTGTTTGTATTTATGCTGATGACAACACTCAAGCTAGATGA
Predicted protein sequences of Glyma.09g278500
>Glyma.09g278500.1.p sequence-type=predicted peptide transcript=Glyma.09g278500.1 locus=Glyma.09g278500 ID=Glyma.09g278500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALGDLMASRFSQSTVLVVPTSHNHLDDSTTASSSSSAAAAVAALNNNSSSNDDADFAHRRDSEAAIAIISSGNYAGNAATSMAYLPHTVVLCELRHDAFEAAVPAGPSDSGLVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALESIGKTLSSQYERWQPKARYKCQLDPTVDEVKKLCTTCRKYAKSERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPINELDSWLKTPSIYVFDCSAAGMIVNSFIELHEWSASNSSVSQRDCILLAACEAHETLPQSAEFPADVFTSCLTTPIKMALRWFCTRSLLRESLDYSLIDKIPGRPNDRKTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPVSHPMLPPTHQHHMWDAWDMAAELCLSQLPSLVEDPNAEFQPSTFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHIYFIKFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQSSCPNDSQTEPLFLQWLCLCLGKLWEDFSEAQTIGLQEDATTIFAPLLSEPQPEVRASAVFALGTLLDVGFDSCRSVGGDEECDDDDKFRAEVSIVKSMLDVASDGSPLVRAEVAVALARFAFGHNKHLKSIAAAYWKPQANSLINSLPSLTNIKGSVGGYAKQNQHMPHGSIVSPQIGPIRVGNDNSPVVRDGRVSSSSPLAGSGIMHGSPLSDDSSHHSDSGILNDGFSNGVANHTGPKPFDNALYSQCVLAMCTLAKDPSPRIANLGRRVLSIIGIEQVVAKPLKSSGVRTAESTASPLARSSSWFDMNGGHLPLTFRTPPVSPPRPSYITRMRRVCSLEFRPHLMDSPDSGLADPLLGSGGASGTSDRSFLPQSTIYSWSCGHFSKPLLTAADDSEEVSARREEREKFALEHIAKCQHSAVSRLTNPIAKWDIKGTQTALLQPFSPIVIAADENERIRIWNHEEATLLNSFDNHDFPDKGISKLCLVNELDESLLLAASSDGNIRIWKDYTLRGKQKLVTAFSSIHGHKPGVRNLNAVVDWQQQCGYLYASGEISSIMLWDVDKEQLVNSKSSSSDCSVSALAASQVHGGQFTAGFIDGSVRLYDVRTPDMLVCGLRPHTQRVEKVVGIGFQPGLDQGKIVSASQAGDIQFLDIRNHSSAYLTIEAHRGSLTALAVHRHAPIIASGSAKQLIKVFSLEGDQLGTIRYYPTLMAQKIGSVSCLNFHPYQVLLAAGAADACVCIYADDNTQAR*






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