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Report for Sequence Feature Glyma.10g037100

Feature Type:gene_model
Chromosome:Gm10
Start:3256351
stop:3259176
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g037100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G44120.3AT RmlC-like cupins superfamily protein JGI N/AIEA
GO:0045735GO-mf nutrient reservoir activity EnsemblGenomesN/AIEA
GO:0045735GO-mf nutrient reservoir activity JGI N/AIEA
PF00190PFAM Cupin JGI N/AIEA

Proteins Associated with Glyma.10g037100
LocusGene SymbolProtein Name
glycinin A5A4B3 glycinin A5A4B3 subunit
GY4 glycinin G4

Expression Patterns of Glyma.10g037100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.10g037100
ParalogEvidenceComments
Glyma.13g123500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.10g037100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g04280 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.10g037100
>Glyma.10g037100.1 sequence-type=CDS polypeptide=Glyma.10g037100.1.p locus=Glyma.10g037100 ID=Glyma.10g037100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGAAGCCCTTCACTCTCTCTCTTTCTTCCCTTTGCTTGCTACTCTTGTCGAGTGCATGCTTTGCTATTAGCTCCAGCAAGCTCAACGAGTGCCAACTCAACAACCTCAACGCGTTGGAACCCGACCACCGCGTTGAGTCCGAAGGTGGTTTGATTCAAACATGGAACTCTCAACACCCTGAGCTGAAATGCGCCGGTGTCACTGTTTCCAAACTCACCCTCAACCGCAATGGCCTCCACTTGCCATCTTACTCACCTTATCCCCGGATGATCATCATCGCCCAAGGGAAAGGAGCACTTGGAGTTGCAATTCCAGGATGTCCTGAGACGTTTGAGGAGCCACAAGAACAATCAAACAGAAGAGGCTCAAGGTCGCAGAAGCAGCAGCTACAGGACAGTCACCAGAAGATTCGTCACTTCAATGAAGGAGACGTACTCGTGATTCCTCCTGGTGTTCCTTACTGGACCTATAACACTGGCGATGAACCAGTTGTTGCCATCAGTCTTCTTGACACCTCTAACTTCAATAACCAGCTTGATCAAACCCCTAGGGTATTTTACCTTGCTGGGAACCCAGATATAGAGTACCCAGAGACCATGCAACAACAACAACAGCAGAAAAGTCATGGTGGACGCAAGCAGGGGCAACACCAGCAGGAGGAAGAGGAAGAAGGTGGCAGCGTGCTCAGTGGCTTCAGCAAACACTTCTTGGCACAATCCTTCAACACCAACGAGGACATAGCTGAGAAACTTCAGTCTCCAGACGACGAAAGGAAGCAGATCGTGACAGTGGAAGGAGGTCTCAGCGTTATCAGCCCCAAGTGGCAAGAACAACAAGATGAAGATGAAGATGAAGACGAAGATGATGAAGATGAACAAATTCCCTCTCACCCTCCTCGCCGACCAAGCCATGGAAAGCGTGAACAAGACGAGGACGAGGACGAAGATGAAGATAAACCTCGTCCTAGTCGACCAAGCCAAGGAAAGCGTGAACAAGACCAGGACCAGGACGAGGACGAAGATGAAGATGAAGATCAACCTCGCAAGAGCCGCGAATGGAGATCGAAAAAGACACAACCCAGAAGACCTAGACAAGAAGAACCACGTGAAAGAGGATGCGAGACAAGAAACGGGGTTGAGGAAAATATCTGCACCTTGAAGCTTCACGAGAACATTGCTCGCCCTTCACGCGCTGACTTCTACAACCCTAAAGCTGGTCGCATTAGTACCCTCAACAGCCTCACCCTCCCAGCCCTCCGCCAATTCCAACTCAGTGCCCAATATGTTGTCCTCTACAAGAATGGAATTTACTCTCCACATTGGAATCTGAATGCAAACAGTGTGATCTATGTGACTCGAGGACAAGGAAAGGTTAGAGTTGTGAACTGCCAAGGGAATGCAGTGTTCGACGGTGAGCTTAGGAGGGGACAATTGCTGGTGGTACCACAGAACTTCGTGGTGGCGGAGCAAGCCGGAGAACAAGGATTCGAATACATAGTATTCAAGACACACCACAACGCAGTCACTAGCTACTTGAAGGATGTGTTTAGGGCAATTCCCTCAGAGGTTCTTGCCCATTCTTACAACCTTCGACAGAGTCAAGTGTCTGAGCTTAAGTATGAAGGAAATTGGGGTCCTTTGGTCAACCCTGAGTCTCAACAAGGCTCACCCCGTGTTAAAGTCGCATAA
Predicted protein sequences of Glyma.10g037100
>Glyma.10g037100.1.p sequence-type=predicted peptide transcript=Glyma.10g037100.1 locus=Glyma.10g037100 ID=Glyma.10g037100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGKPFTLSLSSLCLLLLSSACFAISSSKLNECQLNNLNALEPDHRVESEGGLIQTWNSQHPELKCAGVTVSKLTLNRNGLHLPSYSPYPRMIIIAQGKGALGVAIPGCPETFEEPQEQSNRRGSRSQKQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQTPRVFYLAGNPDIEYPETMQQQQQQKSHGGRKQGQHQQEEEEEGGSVLSGFSKHFLAQSFNTNEDIAEKLQSPDDERKQIVTVEGGLSVISPKWQEQQDEDEDEDEDDEDEQIPSHPPRRPSHGKREQDEDEDEDEDKPRPSRPSQGKREQDQDQDEDEDEDEDQPRKSREWRSKKTQPRRPRQEEPRERGCETRNGVEENICTLKLHENIARPSRADFYNPKAGRISTLNSLTLPALRQFQLSAQYVVLYKNGIYSPHWNLNANSVIYVTRGQGKVRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQAGEQGFEYIVFKTHHNAVTSYLKDVFRAIPSEVLAHSYNLRQSQVSELKYEGNWGPLVNPESQQGSPRVKVA*






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