SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.10g218100

Feature Type:gene_model
Chromosome:Gm10
Start:45010493
stop:45015435
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.10g218100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G71860.1AT protein tyrosine phosphatase 1 JGI N/AIEA
GO:0006470GO-bp protein dephosphorylation EnsemblGenomesN/AIEA
GO:0006470GO-bp protein dephosphorylation JGI N/AIEA
GO:0016311GO-bp dephosphorylation EnsemblGenomesN/AIEA
GO:0035335GO-bp peptidyl-tyrosine dephosphorylation EnsemblGenomesN/AIEA
GO:0004721GO-mf phosphoprotein phosphatase activity EnsemblGenomesN/AIEA
GO:0004725GO-mf protein tyrosine phosphatase activity EnsemblGenomesN/AIEA
GO:0004725GO-mf protein tyrosine phosphatase activity JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016791GO-mf phosphatase activity EnsemblGenomesN/AIEA
KOG0789 KOG Protein tyrosine phosphatase JGI N/AIEA
PTHR19134Panther PROTEIN-TYROSINE PHOSPHATASE JGI N/AIEA
PTHR19134:SF28Panther JGI N/AIEA
PF00102PFAM Protein-tyrosine phosphatase JGI N/AIEA

Proteins Associated with Glyma.10g218100
LocusGene SymbolProtein Name
PTP1 Tyrosine phosphatase 1 gene

Expression Patterns of Glyma.10g218100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.10g218100
ParalogEvidenceComments
Glyma.20g173700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.10g218100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma10g36220 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.10g218100
>Glyma.10g218100.1 sequence-type=CDS polypeptide=Glyma.10g218100.1.p locus=Glyma.10g218100 ID=Glyma.10g218100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCGGCAACCCCGCCACCACTTCCTCCTCCGCATTATCTCCCGAGAAATTTAATTTCAATTTCTCCCCCGATAACCCCTCCCGAATCACCCTCACTTCGGATCAGGTCAACCACTGCACCCAAGCCCTCAACATTCTGAAGGAGAAGCTCCACGCTCCTAACGTGATCACTCAGGAGTTCGCACACTTGCAGGCGAACAGGATAACGCCGAGCGAGATGAGGAGAAGATGCACCGTCGCGTATGACGACGTCAATTTGAGGAAAAACCGATACACCGACGTTCTGCCATTTGACAAGAACAGGGTTGTTCTCAAATCTAGTACTGATTATAGACCTGAAGCACAGGGGTATATCAATGCAAGCCTTGTCTCGACCTCCTCAGCTGGAAACGTGTCCCAGTTTATAGCCACGCAAGGTCCACTTCAACATACTTACGAGGATTTCTGGGAAATGATCATCCAATATCACTGCCCTGCAATTATCATGCTTACTAGGTTGGTGGATAATTACAAGATGACAAAATGTGGAGATTATTTTCAAGCTGAGGATAGGCCTAGAGAAGTTGGTAATATTTCTATTATTGGTAAATGGGAGAACACTACTGAAACTTCACTCGTGCTGCGCCATTTGGAGGTGAACCATAGAGAGGTAGAAGATGCGCCATTATCTGTTTTGCATATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCAAAGATACATTTGCTGTGCGTGAAATTCTGAAAAGATTATACCATTTACCACCAAACTTTGGTCCAATAGTGGTGCACTGCAGTGCAGGTATTGGTAGAACTGGAACATACTGCACAATTCACAACACAATTCAGAGAATAGTTGCTGGTGATATGTCTGCTGTAGATATTGCTAAGACAATAGCTATGTTCAGGTCCCAGCGTATTGGAATGGTTCAGACCCAGGATCAGTACATTTTCTGCTATAACGCTATCATAGATGAACTGGAAGACCTTGTATCTCAGCAGCAGTAG
Predicted protein sequences of Glyma.10g218100
>Glyma.10g218100.1.p sequence-type=predicted peptide transcript=Glyma.10g218100.1 locus=Glyma.10g218100 ID=Glyma.10g218100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAGNPATTSSSALSPEKFNFNFSPDNPSRITLTSDQVNHCTQALNILKEKLHAPNVITQEFAHLQANRITPSEMRRRCTVAYDDVNLRKNRYTDVLPFDKNRVVLKSSTDYRPEAQGYINASLVSTSSAGNVSQFIATQGPLQHTYEDFWEMIIQYHCPAIIMLTRLVDNYKMTKCGDYFQAEDRPREVGNISIIGKWENTTETSLVLRHLEVNHREVEDAPLSVLHIQYPEWPDHGVPKDTFAVREILKRLYHLPPNFGPIVVHCSAGIGRTGTYCTIHNTIQRIVAGDMSAVDIAKTIAMFRSQRIGMVQTQDQYIFCYNAIIDELEDLVSQQQ*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo