SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.13G050300

Feature Type:gene_model
Chromosome:Gm13
Start:14630394
stop:14632571
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13G050300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G02380.1AT CONSTANS-like 2 JGI N/AIEA
GO:0009416GO-bp response to light stimulus EnsemblGenomesN/AIEA
GO:0009909GO-bp regulation of flower development EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
KOG1601 KOG GATA-4/5/6 transcription factors JGI N/AIEA
PF00643PFAM B-box zinc finger JGI N/AIEA
PF06203PFAM CCT motif JGI N/AIEA

Proteins Associated with Glyma.13G050300
LocusGene SymbolProtein Name
COL2a Constance-like 2 gene a

Expression Patterns of Glyma.13G050300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13G050300
ParalogEvidenceComments
Glyma.19g039000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13G050300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g050300 Wm82.a4.v1ISS As supplied by JGI
Glyma13g07030 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13G050300
>Glyma.13g050300.1 sequence-type=CDS polypeptide=Glyma.13g050300.1.p locus=Glyma.13g050300 ID=Glyma.13g050300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGAAGGAAGGCACCAACAACGTTGGTGGCAGCACCGGCACCTGGTCACATGTCTGCGACACGTGCCGGTCAGCGCCATGCGTACTGTACTGCCATGCAGACTCAGCATACCTTTGCTCATCCTGCGATGCTCGTGTCCATGCGGCTAACCGTGTGGCCTCAAGACACGAGCGTGTGTGGGTGTGCGAAGCGTGTGAACGTGCTCCCGCAGCGTTTCTATGCAAAGCCGACGCAGCTTCTCTTTGTTCTTCCTGTGATGCTGACATTCACTCAGCAAACCCTCTCGCTAGCCGCCACCACCGCGTGCCCATTCTCCCGATCTCTGGTTCCCTCTTCGGGGAACCAGAGCATGAACGCGTGTACGCGTTCGTGAATGAAGTGGAAGCGGAGGAGGAAGAGGAAGAGGTTTTTGATGAGTATGATGAGGTTGAAGCAGCTTCGTGGTTGTTGCCACATCCTATGAAAAATGATAAAATTGACGAGAATGGTGGTGATAAGGGTTTTTTGTTTGGTGATGAGTATTTCGACAACCTTGTTGATTGTAACTCATGTGGTCACAATAACAACCAGTTTAGCAACGTTTATGATCAGCACCAGCAGAATTACAGCAACACTGTCCCTCAGAACTATGCAGTGGTTCCAGTTCAGGTGCCGCAGCATTTTCAACCGGGTTTGGACTTTGACTCATCAAAAGCTGGGTTCAGTTACGATGGTTCTCTTAGTCAAAGTGTTTCGGTTTCATCGATGGATGTTGGTGTTGTACTCGAATCAACAATAAGTGACATCTCAATGTCCCACTCAAAGTCGCCAATAGGGACAACTGACCTATTTCCTCCCCTTCCCATGCCTTCACATCTCACACCAATGGACAGAGAGGCAAGAGTCCTAAGATACAGGGAGAAAAAGAAGACAAGAAAATTTGAGAAGAAAATAAGGTATGCCTCAAGGAAGGCCTATGCAGAGACTAGACCCCGCATAAAGGGTCGTTTTGCAAAGAGAACCGATGTAGAAGCTGAAGTGGACCAGATGTTCTCCACAACACTATTCACTGAAGTTGGAGGTAGCATTTTTCCCACTTTCTAG
Predicted protein sequences of Glyma.13G050300
>Glyma.13g050300.1.p sequence-type=predicted peptide transcript=Glyma.13g050300.1 locus=Glyma.13g050300 ID=Glyma.13g050300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLKEGTNNVGGSTGTWSHVCDTCRSAPCVLYCHADSAYLCSSCDARVHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHHRVPILPISGSLFGEPEHERVYAFVNEVEAEEEEEEVFDEYDEVEAASWLLPHPMKNDKIDENGGDKGFLFGDEYFDNLVDCNSCGHNNNQFSNVYDQHQQNYSNTVPQNYAVVPVQVPQHFQPGLDFDSSKAGFSYDGSLSQSVSVSSMDVGVVLESTISDISMSHSKSPIGTTDLFPPLPMPSHLTPMDREARVLRYREKKKTRKFEKKIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLFTEVGGSIFPTF*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo