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Report for Sequence Feature Glyma.13g028100

Feature Type:gene_model
Chromosome:Gm13
Start:7329138
stop:7339205
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g028100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G17680.1AT disease resistance protein (TIR-NBS-LRR class), putative JGI N/AIEA
GO:0006952GO-bp defense response EnsemblGenomesN/AIEA
GO:0007165GO-bp signal transduction EnsemblGenomesN/AIEA
GO:0007165GO-bp signal transduction JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0043531GO-mf ADP binding EnsemblGenomesN/AIEA
GO:0043531GO-mf ADP binding JGI N/AIEA
KOG4658 KOG Apoptotic ATPase JGI N/AIEA
PTHR11017Panther LEUCINE-RICH REPEAT-CONTAINING PROTEIN JGI N/AIEA
PTHR11017:SF20Panther DISEASE RESISTANCE PROTEIN RPS4-RELATED JGI N/AIEA
PF00560PFAM Leucine Rich Repeat JGI N/AIEA
PF00931PFAM NB-ARC domain JGI N/AIEA
PF01582PFAM TIR domain JGI N/AIEA
PF07725PFAM Leucine Rich Repeat JGI N/AIEA

Expression Patterns of Glyma.13g028100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.13g028100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g15590 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g028100
>Glyma.13g028100.1 sequence-type=CDS polypeptide=Glyma.13g028100.1.p locus=Glyma.13g028100 ID=Glyma.13g028100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGAGAAAATGATCAATGTTGTTGCTTCTTCCTCTGGATCTGCTTCTAAGGTATTCCCTAAAAAATATGACGTTTTTCTAAGCTTTCGAGGTGAGGACACCCGAAGGAACTTCACATGCCATCTTTACGAAGCTTTGATGCAAAAGAAAATTAAAACCTATATAGATGAACAACTTGAAAAGGGAGATCAAATCGCACTAGCACTCACCAAAGCCATCGAAGATTCTTGTATATCTATTGTCATCTTCTCAGATAACTATGCTTCCTCAAAGTGGTGCTTGGGTGAACTCTTCAAGATCTTGGAATGCAAGAAAGAAAAAGGACAGATTGTGATACCAGTGTTTTACAATATAGATCCATCCCATGTGAGGAAGCAAATTGGGAGCTATAAGCAAGCCTTTGCAAAACTTGAGGGAGAGCCTGAATGCAACAAATGGAAAGATGCTCTTACTGAAGCAGCAAATTTAGTTGGGTTGGACTCTAAAAATTATAGGAATGATGTTGAATTGCTTAAGGACATTGTTAGAGCTGTTTCGGAAAAATTGCCTCGCAGATACCAAAACCAAAGTAAAGGATTGGTTGGAATTGAGGAACATTATAAACGGATTGAATCATTTCTAAATAATGGGTCTAGTGAAGTTAGAACCCTTGGAATATGGGGCATGGGTGGCATAGGTAAAAGCACCCTTGCTACTGCTTTATATAATGAATTGTCTCCTGAGTTTGAAGGTCATTGCTTCTTCATAAATGTTTTTGATAAGTCTGAAATGAGTAATCTCCAGGGTAAAAGAGTTTTCATTGTCTTGGATGACGTGGCTACCTCTGAGCAATTAGAAAAGCTAATTGGAGAATATGATTTTTTGGGACTAGGAAGTAGGGTCATTGTTACGAGTAGAAATAAGCAAATGCTTAGCCTAGTTGATGAAATATATTCAGTCGAGGAATTGAGCTCTCATCACTCCCTTCAGCTTTTCTGTTTGACTGTTTTTGGAGAAGAACAACCTAAAGATGGATATGAAGATCTATCAAGAAGAGTAATTTTCTATTGCAAAGGTATTCCTTTGGCTTTAAAAATTTTGGGTAAAAGTCTTCGTCAAAAATGTAAAGACGCATGGGAAAGTGAATTGAGAAAAATTCAAAAGATTCTAAATGTGGAAATTCATAATGAATTAAAATTGAGTTATTATGACTTAGATTGTTCACAAAAAGAGATCTTTTTAGACCTTGCATGCTTCTTCAAAGGAGGAAAAAGAGATTGGGTAGCAGGATTATTGGAAGCTTTTGGTTTCTTTCCAGCATCTGAGATAGAAGTACTTTTAGATAAATCTCTCATAAGAATTTCAAAATACAATGAGATAGAAATGCATGACTTGACACAAGAAATGGGTCGAGAAATTATTCGTCAACAATCTATCAAAGATCCTGGAAGACGAAGTCGATTGTGCAAACACGAGGAAGTTGTTGATGTTTTGAAACATAACAAGGGAACTGATGTTGTTGAAGGCATAATTTTAAATCTGCATAAATTAACTGGGGATCTATTTTTGAGCTCCGATTCCCTTGCAAAGATGACTAACCTGAGATTTCTTCGAATCCACAAAGGGTGGCGGAGTAACAACCAATTTAATGTGTTCCTTAGTAATGGTCTTGAGTCATTGTCTAACAAATTGAGGTACCTTCATTGGGATGAATGTTGTCTTGAGTCTTTGCCGTCTAACTTTTGCGCTGAACAACTTGTAGAGATTTCCATGCCTCGTAGCAAGCTCAAAAAGCTCTGGGATGGGGTTCAGAACCTCGTGAGTTTAAAGACCATTGACCTTCAAGAGTCTCGAGACTTGATTGAGATCCCAGACTTATTTATGGCCAAAAAACTTGAAAGAGTATATCTTAATCATTGTAAAAGCTTGTATCAGATCCATCTAAATTCCAAATCTCTCTATGTACTTGACCTCTTAGGTTGTTCTTCTCTCAAGGAATTCACGGTGACATCAGAGGAAATGATAGATTTGATGTTATCTCACACTGCTATATGTACATTGTCATCACCAATTGATCACTTATTGTCTTTAGAAGTGTTAGACCTAAGTGGAACTAATGTTGAGATCTTGCCTGCAAACATAAAAAACCTTTCAATGATGAGAAAGCTAAAATTAGATGATTTCTGTACGAAACTCATGTATCTGCCGGAGCTTCCACCATCCCTAACAGAGCTTCATTTAAATAATTGTCAGAGACTCATGTCTCTACCGAAGCTTCCATCATCCCTGAGAGAGCTTCATTTAAATAATTGTTGGAGACTTGTGTCCTTGCCGAAACTTCCACCATCCCTAAGAGAGCTTCACTTAAATAATTTTTGGAGACTCATGTCTTTGCCGAAGATTCCACCATCCCTAAGAGAGCTTCATTTAAATAATTGTCGGAGACTGGTATCCCTGCCGAAGCTTCCACCAGGGGTGAAAGAGGTGAGTGCCATCAACTGCATTTCTCTTAAGACAGATATAACTCAACGGCTAGTGTTACAACACATGTATCAGAGTCGCATACCCTACTTAAACAAAGACCCTACATACCGTGAGGATGAATACTTCTTCTTCCCTGGAGATCATGTCACAAACAGCAAGTATGGATTTCATACAGAAGAGAGTTCAATAACTATTCCTTATCTTCCAAAATCTCATTTATGTGGTTTCATTTATTGCATCATTCTTTTGGAGGGATCAGTCTTAAAAGATAACCGGTTTTCTTGCGCTATCTATCGAGATGATATGCTGATCAGTTTGGACCATCGCAGGATTATAGGCTGCGAAAAATTGATTTCAGATCACGTATTATTTTGGTATCATGATATCAACAAATTTGGCGGAATAAGTGAAGTGTATGATCATTTCTGCCACATAACATTTGTATTTAAATTTAATTACAATAAAGAGAGCATAAAAGGATGTGGGGTCTTTCCAGTGTACGAGTCAAATCTTTTATATACAATGAGAGAACTGGATCCTCTCCCACAACTTTTGTCTCCAGCAAAAGAAACCAAAAAAAAAAATTGTTTGCCCTTCAAAGCAAGACTCAGAGGATTCTGTAACAGTAACGGTGGTGGTCGTTGA
Predicted protein sequences of Glyma.13g028100
>Glyma.13g028100.1.p sequence-type=predicted peptide transcript=Glyma.13g028100.1 locus=Glyma.13g028100 ID=Glyma.13g028100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAEKMINVVASSSGSASKVFPKKYDVFLSFRGEDTRRNFTCHLYEALMQKKIKTYIDEQLEKGDQIALALTKAIEDSCISIVIFSDNYASSKWCLGELFKILECKKEKGQIVIPVFYNIDPSHVRKQIGSYKQAFAKLEGEPECNKWKDALTEAANLVGLDSKNYRNDVELLKDIVRAVSEKLPRRYQNQSKGLVGIEEHYKRIESFLNNGSSEVRTLGIWGMGGIGKSTLATALYNELSPEFEGHCFFINVFDKSEMSNLQGKRVFIVLDDVATSEQLEKLIGEYDFLGLGSRVIVTSRNKQMLSLVDEIYSVEELSSHHSLQLFCLTVFGEEQPKDGYEDLSRRVIFYCKGIPLALKILGKSLRQKCKDAWESELRKIQKILNVEIHNELKLSYYDLDCSQKEIFLDLACFFKGGKRDWVAGLLEAFGFFPASEIEVLLDKSLIRISKYNEIEMHDLTQEMGREIIRQQSIKDPGRRSRLCKHEEVVDVLKHNKGTDVVEGIILNLHKLTGDLFLSSDSLAKMTNLRFLRIHKGWRSNNQFNVFLSNGLESLSNKLRYLHWDECCLESLPSNFCAEQLVEISMPRSKLKKLWDGVQNLVSLKTIDLQESRDLIEIPDLFMAKKLERVYLNHCKSLYQIHLNSKSLYVLDLLGCSSLKEFTVTSEEMIDLMLSHTAICTLSSPIDHLLSLEVLDLSGTNVEILPANIKNLSMMRKLKLDDFCTKLMYLPELPPSLTELHLNNCQRLMSLPKLPSSLRELHLNNCWRLVSLPKLPPSLRELHLNNFWRLMSLPKIPPSLRELHLNNCRRLVSLPKLPPGVKEVSAINCISLKTDITQRLVLQHMYQSRIPYLNKDPTYREDEYFFFPGDHVTNSKYGFHTEESSITIPYLPKSHLCGFIYCIILLEGSVLKDNRFSCAIYRDDMLISLDHRRIIGCEKLISDHVLFWYHDINKFGGISEVYDHFCHITFVFKFNYNKESIKGCGVFPVYESNLLYTMRELDPLPQLLSPAKETKKKNCLPFKARLRGFCNSNGGGR*






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