SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.13g347700

Feature Type:gene_model
Chromosome:Gm13
Start:43773475
stop:43780320
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g347700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G55020.1AT lipoxygenase 1 JGI N/AIEA
GO:0006629GO-bp lipid metabolic process EnsemblGenomesN/AIEA
GO:0006631GO-bp fatty acid metabolic process EnsemblGenomesN/AIEA
GO:0006633GO-bp fatty acid biosynthetic process EnsemblGenomesN/AIEA
GO:0031408GO-bp oxylipin biosynthetic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016702GO-mf oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen EnsemblGenomesN/AIEA
GO:0016702GO-mf oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding JGI N/AIEA
GO:0051213GO-mf dioxygenase activity EnsemblGenomesN/AIEA
PTHR11771Panther LIPOXYGENASE JGI N/AIEA
PTHR11771:SF2Panther JGI N/AIEA
PF00305PFAM Lipoxygenase JGI N/AIEA
PF01477PFAM PLAT/LH2 domain JGI N/AIEA
PWY-5406SoyCyc9 divinyl ether biosynthesis I Plant Metabolic Network ISS
PWY-5407SoyCyc9 9-lipoxygenase and 9-allene oxide synthase pathway Plant Metabolic Network ISS
GN7V-60286SoyCyc9-rxn linoleate 9S-lipoxygenase Plant Metabolic Network ISS

Proteins Associated with Glyma.13g347700
LocusGene SymbolProtein Name
LOXB1 Lipoxygenase B1 gene
L-4 Lipoxygenase L-4 gene
LOX4 Lipoxygenase 4 gene
VSP94 Vegitative storage protein 94 Kd gene
LOXB1 lipoxygenase

Expression Patterns of Glyma.13g347700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g347700
ParalogEvidenceComments
Glyma.15g026500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g347700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g42330 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g347700
>Glyma.13g347700.1 sequence-type=CDS polypeptide=Glyma.13g347700.1.p locus=Glyma.13g347700 ID=Glyma.13g347700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTTCCTTTCGGGCAAAAGGGTCAAAAGATAAAGGGGACTATGGTGGTTATGCAGAAGAATGTGTTGGATATCAACAGCATCACCAGTGTTGGAGGGATCGTTGACCAAGGCTTAGGCTTCATAGGCAGTGCAGTCGATGCACTTACTTTTGCAGCCACCAAAATCTCCATCCAGTTGATTAGTGCTACCAAGGCTGATGGTGGGAAAGGAAAAATTGGAAAGAGTACAAATTTAAGAGGAAAGATAACATTACCAACCTTGGGAGCTGGCGAACAAGCATACGATGTTAATTTTGAATGGGACAGTGACTTCGGAATTCCCGGTGCATTTTATATTAAGAACTTCATGCAAAATGAGTTCTACCTCAAGTCTCTAATTCTCGAAGACATTCCAAACCACGGAACCATTCACTTCGTATGCAACTCCTGGGTTTACAATTCAAAAAACTACAAGACTGATCGCATTTTCTTTGCCAACAATACATATCTTCCAAGCGAGACACCAGCTCCACTTTTGAAGTACAGAGAAGAAGAATTGAAGAATGTAAGAGGGGATGGAACTGGAGAGCGCAAGGAATGGGATAGGATCTATGATTATGATGTCTACAATGACTTGGGCAACCCGGATAGCGGTGATAAATATGCACGCCCCGTTCTTGGTGGTTCAGCCTTACCTTACCCTCGCAGAGGAAGAACCGGAAGAGGAAAAACTAGAAAAGATCCCAACAGTGAGAAGCCGAGCGATTTTGTTTACCTTCCAAGAGATGAAGCATTTGGTCACTTGAAGTCATCAGATTTTCTCGCTTATGGAATCAAATCTGTATCCCAAGATGTCTTGCCTGTCTTGACTGATGCATTCGATGGAAATATTTTGAGCCTTGAGTTTGATAATTTTGCTGAAGTGCACAAACTCTATGAAGGTGGAGTTACACTACCTACAAACTTTCTTAGCAAGATCGCCCCTATACCAGTGATCAAGGAAATTTTTCGAACTGATGGCGAACAGTTCCTCAAGTATCCACCACCTAAAGTGATGCAGGTGGATAAGTCTGCATGGATGACTGATGAAGAATTTGCAAGAGAAACGATTGCTGGTTTAAATCCAAATGTCATTAAGATTATAGAGGAGTTCCCACTAAGTAGCAAGCTAGATACTCAAGCCTATGGTGATCATACCTGTATAATAGCAAAAGAACATTTGGAGCCTAACTTAGGTGGGCTCACTGTTGAGCAGGCTATCCAAAACAAGAAGTTGTTCATCTTAGATCACCATGACTATCTCATTCCTTATTTGAGGAAAATAAATGCAAATACCACAAAGACTTATGCTACAAGAACCATATTTTTCTTGAAAGATGATGGAACTTTGACACCATTGGCCATTGAGTTAAGTAAGCCACATCCTCAGGGTGAAGAATATGGTCCTGTTAGCGAAGTCTACGTGCCTGCCAGCGAAGGAGTGGAAGCTTATATTTGGTTACTGGCAAAGGCTTATGTTGTTGTGAATGATGCATGCTACCATCAAATCATTAGCCATTGGCTAAGCACTCATGCAATTGTTGAGCCATTTGTCATAGCAACAAACAGGCAACTGAGTGTGGTTCACCCTATTTACAAACTTCTGTTTCCTCACTACCGTGACACCATGAATATTAATTCACTTGCCCGGAAAGCCCTGGTCAATGCAGATGGTATTATAGAGAAAACATTCTTGTGGGGTAGGTACTCTATGGAAATGTCCGCTGTCATTTACAAGGACTGGGTTTTCACTGATCAAGCATTACCTAATGATCTTGTAAAGAGAGGAGTTGCTGTTAAGGACCCATCTGCTCCCCATGGAGTTCGTCTTTTGATTGAGGACTATCCTTATGCTTCTGATGGGCTAGAGATATGGGATGCCATCAAGTCCTGGGTGCAAGAATATGTCTCATTCTACTACAAGTCAGATGAGGAACTCCAAAAAGACCCTGAACTCCAAGCTTGGTGGAAAGAACTTGTAGAGGTGGGTCATGGTGATTTGAAAGATAAGCCATGGTGGCAAAAGATGCAAACTCGTGAAGAGTTGGTTGAAGCTTCCGCTATCCTCATATGGATTGCTTCAGCCCTTCATGCTGCTGTTAACTTTGGACAGTATCCATATGGAGGTTTAATCCTAAACAGGCCAACTATTAGCAGGAGATTCATGCCTGAAAAGGGGTCTCCTGAATATGATGCGTTGGCTAAGAACCCTGAGAAGGAGTTTTTGAAGACTATTACTGGCAAGAAGGAGACCCTCATTGACCTTACAGTTATAGAAATCTTGTCAAGGCACGCATCTGATGAGTTCTACCTTGGGCAGAGAGATGGTGGTGACTACTGGACTTCTGATGCCGGTCCATTAGAGGCATTTAAGAGGTTTGGAAAGAAGCTTGAAGAGATTGAAAAGAAGCTTATAGAGAAGAACAAAGATGAGACATTGAGAAACCGCTATGGGCCAGCTAAAATGCCTTACACTCTGCTCTATCCTTCTAGTGAGGAGGGATTGACTTTCAGAGGAATTCCCAACAGTATCTCTATCTAA
Predicted protein sequences of Glyma.13g347700
>Glyma.13g347700.1.p sequence-type=predicted peptide transcript=Glyma.13g347700.1 locus=Glyma.13g347700 ID=Glyma.13g347700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFPFGQKGQKIKGTMVVMQKNVLDINSITSVGGIVDQGLGFIGSAVDALTFAATKISIQLISATKADGGKGKIGKSTNLRGKITLPTLGAGEQAYDVNFEWDSDFGIPGAFYIKNFMQNEFYLKSLILEDIPNHGTIHFVCNSWVYNSKNYKTDRIFFANNTYLPSETPAPLLKYREEELKNVRGDGTGERKEWDRIYDYDVYNDLGNPDSGDKYARPVLGGSALPYPRRGRTGRGKTRKDPNSEKPSDFVYLPRDEAFGHLKSSDFLAYGIKSVSQDVLPVLTDAFDGNILSLEFDNFAEVHKLYEGGVTLPTNFLSKIAPIPVIKEIFRTDGEQFLKYPPPKVMQVDKSAWMTDEEFARETIAGLNPNVIKIIEEFPLSSKLDTQAYGDHTCIIAKEHLEPNLGGLTVEQAIQNKKLFILDHHDYLIPYLRKINANTTKTYATRTIFFLKDDGTLTPLAIELSKPHPQGEEYGPVSEVYVPASEGVEAYIWLLAKAYVVVNDACYHQIISHWLSTHAIVEPFVIATNRQLSVVHPIYKLLFPHYRDTMNINSLARKALVNADGIIEKTFLWGRYSMEMSAVIYKDWVFTDQALPNDLVKRGVAVKDPSAPHGVRLLIEDYPYASDGLEIWDAIKSWVQEYVSFYYKSDEELQKDPELQAWWKELVEVGHGDLKDKPWWQKMQTREELVEASAILIWIASALHAAVNFGQYPYGGLILNRPTISRRFMPEKGSPEYDALAKNPEKEFLKTITGKKETLIDLTVIEILSRHASDEFYLGQRDGGDYWTSDAGPLEAFKRFGKKLEEIEKKLIEKNKDETLRNRYGPAKMPYTLLYPSSEEGLTFRGIPNSISI*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo