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Report for Sequence Feature Glyma.13g372000

Feature Type:gene_model
Chromosome:Gm13
Start:45701238
stop:45704364
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G21240.1AT 4-coumarate:CoA ligase 2 JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0009698GO-bp phenylpropanoid metabolic process EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0016207GO-mf 4-coumarate-CoA ligase activity EnsemblGenomesN/AIEA
GO:0016874GO-mf ligase activity EnsemblGenomesN/AIEA
KOG1176 KOG Acyl-CoA synthetase JGI N/AIEA
PTHR24096Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24096:SF43Panther JGI N/AIEA
PF00501PFAM AMP-binding enzyme JGI N/AIEA
PWY-1121SoyCyc9 suberin monomers biosynthesis Plant Metabolic Network ISS
PWY-361SoyCyc9 phenylpropanoid biosynthesis Plant Metabolic Network ISS
PWY-5754SoyCyc9 4-hydroxybenzoate biosynthesis I (eukaryotes) Plant Metabolic Network ISS
PWY-6320SoyCyc9 phaselate biosynthesis Plant Metabolic Network ISS
PWY-6982SoyCyc9 umbelliferone biosynthesis Plant Metabolic Network ISS
PWY1F-FLAVSYNSoyCyc9 flavonoid biosynthesis Plant Metabolic Network ISS
GN7V-55874SoyCyc9-rxn trans-feruloyl-CoA synthase Plant Metabolic Network ISS

LocusGene SymbolProtein Name
4CL2 4-coumarate:coenzyme A ligase gene 2

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE


View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.



View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


ParalogEvidenceComments
Glyma.15g001700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Corresponding NameAnnotation VersionEvidenceComments
Glyma13g44950 Wm82.a1.v1.1IGC As supplied by JGI


>Glyma.13g372000.1 sequence-type=CDS polypeptide=Glyma.13g372000.1.p locus=Glyma.13g372000 ID=Glyma.13g372000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGATGATGGAAGCAGGAGGGAATTGATATTCAGGTCGAAGCTTCCGGATATCTACATCCCCAAACATATGCCCCTCCACTCTTACTGCTTCGAGAATTTGAGAGAGTGTGGTTCACGCCCCTGCCTGATCAATGCCCCCACGGGAGACGTCTACAGCTACCACGAGGTGGACAGCACCGCCAGAAAGGTGGCGAGGGGGCTGAAGAAAGAGGGCGTGGAACAGGGCCAGGTCATCATGATCCTCCTCCCCAATTGCCCCGAATTCGTCTTCTCGTTTCTTGGCGCATCCCACCGCGGTGCCATGGCCACTGCCGCCAACCCTTTCTTCACCCCCGCCGAGATTGCAAAGCAAGCCCATGCCTCCAATGCCAAGCTCCTCATCACCCAGGCCTCTTACTACGACAAAGTCAAGGACCTCCGCGACATCAAGCTCGTATTCGTCGACTCTTGTCCCCCCCATACAGAGGAGAAGCAGCATCTCCATTTCTCACATCTGTGTGAGGATAACGGTGACGCTGATGTTGATGTTGATGTTGATATCAAGCCCGATGACGTGGTTGCATTGCCTTATTCTTCGGGAACAACTGGTCTTCCCAAGGGAGTGATGCTGAGCCACAAGGGGCTGGTGACCAGCATTGCTCAGCAGGTTGACGGTGATAATCCCAACCTCTATTACCACTGCCACGACACCATCCTCTGCGTGCTTCCCCTCTTTCACATTTACTCTCTCAACTCCGTTCTTCTCTGTGGCTTGCGTGCCAAGGCTACCATTCTCCTCATGCCCAAGTTCGATATTAACTCCTTGCTTGCTCTCATTCACAAGCACAAAGTCACTATTGCCCCTGTCGTCCCTCCCATTGTTCTCGCCATTTCCAAATCACCCGATCTCCACAAGTACGACCTGTCTTCCATCAGAGTCTTGAAGTCCGGGGGAGCCCCTCTGGGTAAGGAACTCGAAGACACTCTCAGAGCTAAATTCCCCAACGCCAAACTTGGCCAGGGATACGGAATGACTGAGGCAGGGCCTGTGCTAACAATGTCTTTAGCTTTTGCTAAAGAACCGATAGACGTGAAACCAGGTGCATGTGGAACCGTTGTAAGAAATGCAGAGATGAAGATTGTCGATCCTGAAACCGGTCATTCTTTACCCAGAAACCAATCCGGTGAAATTTGCATAAGAGGCGACCAGATTATGAAAGGTTATCTAAATGATGGAGAGGCTACAGAGAGAACCATAGACAAAGATGGTTGGTTGCACACAGGTGACATCGGTTACATCGACGATGACGATGAGTTATTCATCGTTGACAGGCTCAAGGAATTGATCAAATACAAAGGATTTCAAGTGGCTCCAGCTGAACTTGAAGCCCTTCTTCTCACTCATCCTAAGATCTCTGATGCTGCTGTTGTTCCAATGAAGGATGAAGCCGCGGGAGAGGTACCTGTTGCATTTGTGGTCATATCAAATGGTTATACCGACACAACCGAGGATGAAATTAAGCAGTTTATCTCCAAACAGGTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCCAAGTCACCGTCAGGCAAAATCTTGCGCAAGGATCTAAGAGCAAAGATAGCGGCAAGTGTTCCAAAATGA

>Glyma.13g372000.1.p sequence-type=predicted peptide transcript=Glyma.13g372000.1 locus=Glyma.13g372000 ID=Glyma.13g372000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADDGSRRELIFRSKLPDIYIPKHMPLHSYCFENLRECGSRPCLINAPTGDVYSYHEVDSTARKVARGLKKEGVEQGQVIMILLPNCPEFVFSFLGASHRGAMATAANPFFTPAEIAKQAHASNAKLLITQASYYDKVKDLRDIKLVFVDSCPPHTEEKQHLHFSHLCEDNGDADVDVDVDIKPDDVVALPYSSGTTGLPKGVMLSHKGLVTSIAQQVDGDNPNLYYHCHDTILCVLPLFHIYSLNSVLLCGLRAKATILLMPKFDINSLLALIHKHKVTIAPVVPPIVLAISKSPDLHKYDLSSIRVLKSGGAPLGKELEDTLRAKFPNAKLGQGYGMTEAGPVLTMSLAFAKEPIDVKPGACGTVVRNAEMKIVDPETGHSLPRNQSGEICIRGDQIMKGYLNDGEATERTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPKISDAAVVPMKDEAAGEVPVAFVVISNGYTDTTEDEIKQFISKQVVFYKRINRVFFIDAIPKSPSGKILRKDLRAKIAASVPK*







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