Report for Sequence Feature Glyma.16G130900
Feature Type: gene_model
Chromosome: Gm16
Start: 28487056
stop: 28492828
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.16G130900
Expression Patterns of Glyma.16G130900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.16G130900
Paralog Evidence Comments
Glyma.02g050500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.16G130900 Gene Call Version Wm82.a2.v1
Transcripts of Glyma.16G130900
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.16g130900.2 sequence-type=transcript locus=Glyma.16g130900 ID=Glyma.16g130900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCACTTTCAAGCTTCGTCTTTGGGTTAGCTATGCTGGGTCAAAGTCTAATCACACTTAAATTTTCTCACCTCTTTCCAGCACACAGACTCAGGGTGTTACCAACTTAGCTACACTTAATTTTGGATCACCGACAATTCCGGCAACGTTACTATGAGTTTCTAGACTATTTCCGGATTCCCGATGGACCAATTTTTTTGGTAATAGGTGGTGAAGGTATATTGAATGGGGTAGCAAATGACTATCTTGCTGTACTGGCAAAGAAGTTTGGAGCAGCTATGGTTACTCTTGAACATCGCTACTACGGAAAGAGTACTCCATTTAATTCTTTGGAGACAGAAAATTTGAAATATCTTTCGTCCAAGCAGGCACTCTCTGATTTGGCTGTTTTTCGGCAGTATTATCAGGACTCCATAAATGCAAAGCTTAATAGAACAAAAATTGAAAACCCCTGGTTCATTTTTGGTGGTTCATATTCTGGAGCACTCAGTGCATGGTTCCGTCTTAAGTTTCCCCATTTAACATGTGGAAGTCTGGCTAGTTCTGCAGTTGTTCTTGCTGTTTATAACTACACAGAATTTGATCAGCAGATTGGTGAGTCGGCAGGTCCTGAATGTAAAGAAGCGCTGCAAGAAACTACTCAACTCATTGAACACAAACTTGCAACCAGTGGAAAGGAATTGAAGGCCTCTTTTGATGCTGCTGATCTTGAAATAGATGGAGACTTTTTTTATTTCTTGGCTGATGCTACTGCTATAGCGTTTCAATATGGAAATCCAGATAAAGTATGCAAGCCTCTTGTTGAAGCAAAGAAGGCTGGAGAGGACTTGGTGGATGCTTATGCCAAATATGTCAAAGAGTACTACATTGGAACTTTTGGTACTGATGTGCAGACATATGATCAGAAGTACTTGAAAAGAACTGCTATGAACGAGGACAATTCTGCTCGATTATGGTGGTTTCAAGTTTGCACTGAAGTTGCATACTTTCAGGTGGCTCCCTCAAATGACAGTATTCGCTCCTCAAAAGTGGACATAAAATACCATTTGGACCTTTGCAAAAATGTCTTTGGAGAGGGCATCTTTCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTGGTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCATCCAAGCAAACTTCATCTCCTGATATGCCTTCCTACATCGTCAAATGTTACAATTGTGGCCACTGTTCTGATTATCGAGGATGTCCTCAATTCCCTTTCTCCATTGAAGGTAATGAGAAAAACTGCACCTCTCCTGATGCAGTTCACAAAGTAAGGCAAAAGATTTCAGAACATATGGACTTGTGGTTATCTGAATGCGTCGACACAGGCAGAAGTTTTATATGATTATTTACATAAGATGTGAATGATGTACTTTTTTTTCTAAGTTGTTAATGATGTACTATAACTCCGCATGACTTTTGGTATTTCTTTCCTTCATAAGCTAATTATGACACCGTGAAATATATTTAGTGACTTCGTATAAATTGACCAAATATAGAGTAGAACCTATAAGACTACGGGTAGGGTTAGAACTATTAAATGAGT
Coding sequences of Glyma.16G130900
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.16g130900.1 sequence-type=CDS polypeptide=Glyma.16g130900.1.p locus=Glyma.16g130900 ID=Glyma.16g130900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAACAAGAGGAATGGATGATTACGACAGCGTTGCTATCGTTGCTGTTTGTTTCATCTTTTCCGCCGTTGAGTTACGGAGTTGTTCCTCCTCGTACTCTGCTCAATAAGCTGTCGGAGGGCAAATATCTCAACACTCAGGAGCTCTGGTTCGACCAAACCCTCGATCACTTCTCTCCCTATGATCACCGACAATTCCGGCAACGTTACTATGAGTTTCTAGACTATTTCCGGATTCCCGATGGACCAATTTTTTTGGTAATAGGTGGTGAAGGTATATTGAATGGGGTAGCAAATGACTATCTTGCTGTACTGGCAAAGAAGTTTGGAGCAGCTATGGTTACTCTTGAACATCGCTACTACGGAAAGAGTACTCCATTTAATTCTTTGGAGACAGAAAATTTGAAATATCTTTCGTCCAAGCAGGCACTCTCTGATTTGGCTGTTTTTCGGCAGTATTATCAGGACTCCATAAATGCAAAGCTTAATAGAACAAAAATTGAAAACCCCTGGTTCATTTTTGGTGGTTCATATTCTGGAGCACTCAGTGCATGGTTCCGTCTTAAGTTTCCCCATTTAACATGTGGAAGTCTGGCTAGTTCTGCAGTTGTTCTTGCTGTTTATAACTACACAGAATTTGATCAGCAGATTGGTGAGTCGGCAGGTCCTGAATGTAAAGAAGCGCTGCAAGAAACTACTCAACTCATTGAACACAAACTTGCAACCAGTGGAAAGGAATTGAAGGCCTCTTTTGATGCTGCTGATCTTGAAATAGATGGAGACTTTTTTTATTTCTTGGCTGATGCTACTGCTATAGCGTTTCAATATGGAAATCCAGATAAAGTATGCAAGCCTCTTGTTGAAGCAAAGAAGGCTGGAGAGGACTTGGTGGATGCTTATGCCAAATATGTCAAAGAGTACTACATTGGAACTTTTGGTACTGATGTGCAGACATATGATCAGAAGTACTTGAAAAGAACTGCTATGAACGAGGACAATTCTGCTCGATTATGGTGGTTTCAAGTTTGCACTGAAGTTGCATACTTTCAGGTGGCTCCCTCAAATGACAGTATTCGCTCCTCAAAAGTGGACATAAAATACCATTTGGACCTTTGCAAAAATGTCTTTGGAGAGGGCATCTTTCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTGGTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCATCCAAGCAAACTTCATCTCCTGATATGCCTTCCTACATCGTCAAATGTTACAATTGTGGCCACTGTTCTGATTATCGAGGATGTCCTCAATTCCCTTTCTCCATTGAAGGTAATGAGAAAAACTGCACCTCTCCTGATGCAGTTCACAAAGTAAGGCAAAAGATTTCAGAACATATGGACTTGTGGTTATCTGAATGCGTCGACACAGGCAGAAGTTTTATATGA
>Glyma.16g130900.2 sequence-type=CDS polypeptide=Glyma.16g130900.2.p locus=Glyma.16g130900 ID=Glyma.16g130900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTACTCTTGAACATCGCTACTACGGAAAGAGTACTCCATTTAATTCTTTGGAGACAGAAAATTTGAAATATCTTTCGTCCAAGCAGGCACTCTCTGATTTGGCTGTTTTTCGGCAGTATTATCAGGACTCCATAAATGCAAAGCTTAATAGAACAAAAATTGAAAACCCCTGGTTCATTTTTGGTGGTTCATATTCTGGAGCACTCAGTGCATGGTTCCGTCTTAAGTTTCCCCATTTAACATGTGGAAGTCTGGCTAGTTCTGCAGTTGTTCTTGCTGTTTATAACTACACAGAATTTGATCAGCAGATTGGTGAGTCGGCAGGTCCTGAATGTAAAGAAGCGCTGCAAGAAACTACTCAACTCATTGAACACAAACTTGCAACCAGTGGAAAGGAATTGAAGGCCTCTTTTGATGCTGCTGATCTTGAAATAGATGGAGACTTTTTTTATTTCTTGGCTGATGCTACTGCTATAGCGTTTCAATATGGAAATCCAGATAAAGTATGCAAGCCTCTTGTTGAAGCAAAGAAGGCTGGAGAGGACTTGGTGGATGCTTATGCCAAATATGTCAAAGAGTACTACATTGGAACTTTTGGTACTGATGTGCAGACATATGATCAGAAGTACTTGAAAAGAACTGCTATGAACGAGGACAATTCTGCTCGATTATGGTGGTTTCAAGTTTGCACTGAAGTTGCATACTTTCAGGTGGCTCCCTCAAATGACAGTATTCGCTCCTCAAAAGTGGACATAAAATACCATTTGGACCTTTGCAAAAATGTCTTTGGAGAGGGCATCTTTCCTGATGTTGATGCAACTAATTTATACTACGGAGGCACTAAAATTGCTGGTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCATCCAAGCAAACTTCATCTCCTGATATGCCTTCCTACATCGTCAAATGTTACAATTGTGGCCACTGTTCTGATTATCGAGGATGTCCTCAATTCCCTTTCTCCATTGAAGGTAATGAGAAAAACTGCACCTCTCCTGATGCAGTTCACAAAGTAAGGCAAAAGATTTCAGAACATATGGACTTGTGGTTATCTGAATGCGTCGACACAGGCAGAAGTTTTATATGA
Predicted protein sequences of Glyma.16G130900
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.16g130900.1.p sequence-type=predicted peptide transcript=Glyma.16g130900.1 locus=Glyma.16g130900 ID=Glyma.16g130900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKQEEWMITTALLSLLFVSSFPPLSYGVVPPRTLLNKLSEGKYLNTQELWFDQTLDHFSPYDHRQFRQRYYEFLDYFRIPDGPIFLVIGGEGILNGVANDYLAVLAKKFGAAMVTLEHRYYGKSTPFNSLETENLKYLSSKQALSDLAVFRQYYQDSINAKLNRTKIENPWFIFGGSYSGALSAWFRLKFPHLTCGSLASSAVVLAVYNYTEFDQQIGESAGPECKEALQETTQLIEHKLATSGKELKASFDAADLEIDGDFFYFLADATAIAFQYGNPDKVCKPLVEAKKAGEDLVDAYAKYVKEYYIGTFGTDVQTYDQKYLKRTAMNEDNSARLWWFQVCTEVAYFQVAPSNDSIRSSKVDIKYHLDLCKNVFGEGIFPDVDATNLYYGGTKIAGSKIIFTNGSQDPWRHASKQTSSPDMPSYIVKCYNCGHCSDYRGCPQFPFSIEGNEKNCTSPDAVHKVRQKISEHMDLWLSECVDTGRSFI*
>Glyma.16g130900.2.p sequence-type=predicted peptide transcript=Glyma.16g130900.2 locus=Glyma.16g130900 ID=Glyma.16g130900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVTLEHRYYGKSTPFNSLETENLKYLSSKQALSDLAVFRQYYQDSINAKLNRTKIENPWFIFGGSYSGALSAWFRLKFPHLTCGSLASSAVVLAVYNYTEFDQQIGESAGPECKEALQETTQLIEHKLATSGKELKASFDAADLEIDGDFFYFLADATAIAFQYGNPDKVCKPLVEAKKAGEDLVDAYAKYVKEYYIGTFGTDVQTYDQKYLKRTAMNEDNSARLWWFQVCTEVAYFQVAPSNDSIRSSKVDIKYHLDLCKNVFGEGIFPDVDATNLYYGGTKIAGSKIIFTNGSQDPWRHASKQTSSPDMPSYIVKCYNCGHCSDYRGCPQFPFSIEGNEKNCTSPDAVHKVRQKISEHMDLWLSECVDTGRSFI*