Glyma.16g045000

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Report for Sequence Feature Glyma.16g045000

Feature Type:	gene_model
Chromosome:	Gm16
Start:	4272035
stop:	4274373
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.16g045000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13870.1	AT	xyloglucan endotransglucosylase/hydrolase 5	JGI	N/A	IEA
GO:0005975	GO-bp	carbohydrate metabolic process	EnsemblGenomes	N/A	IEA
GO:0005975	GO-bp	carbohydrate metabolic process	JGI	N/A	IEA
GO:0006073	GO-bp	cellular glucan metabolic process	EnsemblGenomes	N/A	IEA
GO:0006073	GO-bp	cellular glucan metabolic process	JGI	N/A	IEA
GO:0008152	GO-bp	metabolic process	EnsemblGenomes	N/A	IEA
GO:0010411	GO-bp	xyloglucan metabolic process	EnsemblGenomes	N/A	IEA
GO:0042546	GO-bp	cell wall biogenesis	EnsemblGenomes	N/A	IEA
GO:0071555	GO-bp	cell wall organization	EnsemblGenomes	N/A	IEA
GO:0005576	GO-cc	extracellular region	EnsemblGenomes	N/A	IEA
GO:0005618	GO-cc	cell wall	EnsemblGenomes	N/A	IEA
GO:0005618	GO-cc	cell wall	JGI	N/A	IEA
GO:0048046	GO-cc	apoplast	EnsemblGenomes	N/A	IEA
GO:0048046	GO-cc	apoplast	JGI	N/A	IEA
GO:0004553	GO-mf	hydrolase activity, hydrolyzing O-glycosyl compounds	EnsemblGenomes	N/A	IEA
GO:0004553	GO-mf	hydrolase activity, hydrolyzing O-glycosyl compounds	JGI	N/A	IEA
GO:0016740	GO-mf	transferase activity	EnsemblGenomes	N/A	IEA
GO:0016762	GO-mf	xyloglucan:xyloglucosyl transferase activity	EnsemblGenomes	N/A	IEA
GO:0016762	GO-mf	xyloglucan:xyloglucosyl transferase activity	JGI	N/A	IEA
GO:0016787	GO-mf	hydrolase activity	EnsemblGenomes	N/A	IEA
GO:0016798	GO-mf	hydrolase activity, acting on glycosyl bonds	EnsemblGenomes	N/A	IEA
PF00722	PFAM	Glycosyl hydrolases family 16	JGI	N/A	IEA
PF06955	PFAM	Xyloglucan endo-transglycosylase (XET) C-terminus	JGI	N/A	IEA
GN7V-47222	SoyCyc9-rxn	xyloglucan:xyloglucosyl transferase	Plant Metabolic Network		ISS

Proteins Associated with Glyma.16g045000

Locus	Gene Symbol	Protein Name
XTH1	XTH1	endo-xyloglucan transferase 1 gene

Expression Patterns of Glyma.16g045000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.16g045000

Paralog	Evidence	Comments
Glyma.19g106700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.16g045000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma16g04950	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.16g045000

Limit To All Plant Sequences

>Glyma.16g045000.1 sequence-type=CDS polypeptide=Glyma.16g045000.1.p locus=Glyma.16g045000 ID=Glyma.16g045000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTATTTACATAAATTTAAATTATATTTAAAAGGATACAGAGTAGAGAGGGAAAGAGAGAGGAACAAGGGTTTTAGGGCAGGGTCTAGTGCTTATAAATACCCTGCATTAGCCACTAGATTTCACAAACTGAGGCACACAGAAAAAATGGGTTCTTCTTCTTCTATGTGGACGGTGTGTGTGATTTTGGCATCACTGGCCTCTGCAGCACTCTGTGCCAACCCACGCAGGCCAGTGGATGTACAATTTGGCCGAAACTACGTGCCCACATGGGCCTTTGATCACATCAAATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGTACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGGAACAGAACAGGACAACCTTACATTCTGCAAACAAATGTGTTCACCGGAGGCAAGGGTGATAGAGAGCAAAGAATCTATCTCTGGTTTGATCCCACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTTGGGAGTGAAATTCCCATTCGACCAGCCAATGAAGATCTACAACAGTTTGTGGAACGCTGATGACTGGGCAACGAGGGGTGGTTTGGAGAAAACGGATTGGTCGAAAGCACCCTTCATAGCAGCGTACAAGGGGTTTCACATCGACGGGTGCGAGGCTTCGGTGAACGCCAAGTTCTGCGACACGCAGGGCAAGAGGTGGTGGGACCAGCCTGAGTTCCGTGACCTTGACGCCGCCCAGTGGCGTAGGCTCAGATGGGTGCGCCAGAAATACACCATCTACAACTACTGCACTGACACTAAACGCTATCCTCATATCTCTCCTCCTGAGTGCAAAAGAGACCGTGACATTTAA

Predicted protein sequences of Glyma.16g045000

Limit To All Plant Sequences

>Glyma.16g045000.1.p sequence-type=predicted peptide transcript=Glyma.16g045000.1 locus=Glyma.16g045000 ID=Glyma.16g045000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYLHKFKLYLKGYRVERERERNKGFRAGSSAYKYPALATRFHKLRHTEKMGSSSSMWTVCVILASLASAALCANPRRPVDVQFGRNYVPTWAFDHIKYFNGGSDIQLHLDKYTGTGFQSKGSYLFGHFSMYIKMVPGDSAGTVTAFYLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEYHRYSILWNLYQIVFFVDEVPIRVFKNSKDLGVKFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIAAYKGFHIDGCEASVNAKFCDTQGKRWWDQPEFRDLDAAQWRRLRWVRQKYTIYNYCTDTKRYPHISPPECKRDRDI*

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