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Report for Sequence Feature Glyma.18G063500

Feature Type:gene_model
Chromosome:Gm18
Start:5828968
stop:5831963
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18G063500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G47160.1AT RING/U-box superfamily protein JGI N/AIEA
AT3G47160.2AT RING/U-box superfamily protein JGI N/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
KOG1039 KOG Predicted E3 ubiquitin ligase JGI N/AIEA
PTHR15067Panther FAMILY NOT NAMED JGI N/AIEA
PTHR15067:SF7Panther JGI N/AIEA

Expression Patterns of Glyma.18G063500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.18G063500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g063500 Wm82.a4.v1ISS As supplied by JGI
Glyma18g07090 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18G063500
>Glyma.18g063500.2 sequence-type=transcript locus=Glyma.18g063500 ID=Glyma.18g063500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAACCAAGAGTAGTTAGAACCGAAAGGGTAATAGTGTCACTGTGAGTGtcatatacaaatcatatcatatgatatatattggtataatatcaACACCATAGGCTTTGTGGGATTATTCTTAGTTGCACGCAGAAAAATTTTCTGGGAAAATATCTTGGTATGGGAAAGGGATCTTTTCAGGACTCTGTTAAAGCTCTGGAAGCTGACATTCAGTATGCTAATACCCTTGGTAGAGTTGGACTTTGAAGCTGAGAATTTGTTTAAAGAAGATGTTGATGAACTGCACCTGTGAATTTGCATGACACTCAGTTGGAAAATTGAATTAGATAACACTTTTCAATATCCAAAAACTTCATTGATATGTTTATGATGGAGTCTTTCATACTAATTCTTTAAGCAGAGTTTAGCACTTTTCTCATGTGAGTGAGATTGTATGCTTTCTTTTCGCCTCTTTGTTAGGGCATTAGGCTATCCAAGGGACAAAGATGGAGGATGCTTTCAGATGAGGATATCATACAGTCCAGCAGCCCCTCTTTTTCTGTTTCTTGTTCAATGGACCGATTACCGCCTCGCCGGTGCTCTGGGTTTGCTGAGAATTCTAATTTATGTGACTTATGGAAATGGGAAGAATACTATGTCAATATATGAAAGGAAAGCAAGCATTAGACAATTTTACTCGATTATATTTCCTGCTCTGTTGCAACTTGAGAAAGGCATCACAGATTTGGAGGAAAGGAAACAGAAAGAAGTATATGCCCTTAGATACCAAAGGAAAAGTGAGTTCAATGAGAGAAGACAATCTGAAATTGACATTGAAAGAGAAGAGGAATGTGGAGTGTGCTTGGAGGTGAAAGCAAAAGTTGTGCTTCCTAATTGCTGCCACTACATGTGTTTGAAGTGCTACAGAGATTGGTGTCAGAGGTCTCAGTCTTGCCCCTTTTGCCGGGATAGCCTGAAGAGAACCAACTCTGGGGACCTTTGGATTTACACTGACACCAGTGACATTGTTGATGTTGGGACAATTTTCAAAGAGAATTGTAAGATGCTGTTTCTGTACATAGAGAAGCTGCCTCTAATTGTTCCAGATCCCAGATATGTGTTCTATGATCCACTTCTGAGATGAAGGAATTGCCTACAGATTTTTGGAAAATAGTGTGTATGTTTCACTTTACTTGTACATGCATTTTAGACCATAATTTAATTGTGTATATATTTAACTGGCTTTTTTCCAATCGGCTTCAAGTTGGTGATTTATTTCTAACCCAAAGTTCCAATATTCTGCTGTCCCCTATCTATCTACCATACAGTGATTTGCTTATTCACTTATAATAATAATAATAAGGCAAAC

>Glyma.18g063500.3 sequence-type=transcript locus=Glyma.18g063500 ID=Glyma.18g063500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCTTTCTGTCTCTGTTTTTGGCCAGTTGTTTCACTTCTTTGAATGAGAAATTCTGTTTTTGGCTAGTTGTTTCACTTCTTTGAATGAGAAATTCAGTTTCAAAAGCTTGTAATGGCATTAGGCTATCCAAGGGACAAAGATGGAGGATGCTTTCAGATGAGGATATCATACAGTCCAGCAGCCCCTCTTTTTCTGTTTCTTGTTCAATGGACCGATTACCGCCTCGCCGGTGCTCTGGGTTTGCTGAGAATTCTAATTTATGTGACTTATGGAAATGGGAAGAATACTATGTCAATATATGAAAGGAAAGCAAGCATTAGACAATTTTACTCGATTATATTTCCTGCTCTGTTGCAACTTGAGAAAGGCATCACAGATTTGGAGGAAAGGAAACAGAAAGAAGTATATGCCCTTAGATACCAAAGGAAAAGTGAGTTCAATGAGAGAAGACAATCTGAAATTGACATTGAAAGAGAAGAGGAATGTGGAGTGTGCTTGGAGGTGAAAGCAAAAGTTGTGCTTCCTAATTGCTGCCACTACATGTGTTTGAAGTGCTACAGAGATTGGTGTCAGAGGTCTCAGTCTTGCCCCTTTTGCCGGGATAGCCTGAAGAGAACCAACTCTGGGGACCTTTGGATTTACACTGACACCAGTGACATTGTTGATGTTGGGACAATTTTCAAAGAGAATTGTAAGATGCTGTTTCTGTACATAGAGAAGCTGCCTCTAATTGTTCCAGATCCCAGATATGTGTTCTATGATCCACTTCTGAGATGAAGGAATTGCCTACAGATTTTTGGAAAATAGTGTGTATGTTTCACTTTACTTGTACATGCATTTTAGACCATAATTTAATTGTGTATATATTTAACTGGCTTTTTTCCAATCGGCTTCAAGTTGGTGATTTATTTCTAACCCAAAGTTCCAATATTCTGCTGTCCCCTATCTATCTACCATACAGTGATTTGCTTATTCACTTATAATAATAATAATAAGGCAAAC
Coding sequences of Glyma.18G063500
>Glyma.18g063500.1 sequence-type=CDS polypeptide=Glyma.18g063500.1.p locus=Glyma.18g063500 ID=Glyma.18g063500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAAAGGGATCTTTTCAGGACTCTGTTAAAGCTCTGGAAGCTGACATTCAGTATGCTAATACCCTGGCATTAGGCTATCCAAGGGACAAAGATGGAGGATGCTTTCAGATGAGGATATCATACAGTCCAGCAGCCCCTCTTTTTCTGTTTCTTGTTCAATGGACCGATTACCGCCTCGCCGGTGCTCTGGGTTTGCTGAGAATTCTAATTTATGTGACTTATGGAAATGGGAAGAATACTATGTCAATATATGAAAGGAAAGCAAGCATTAGACAATTTTACTCGATTATATTTCCTGCTCTGTTGCAACTTGAGAAAGGCATCACAGATTTGGAGGAAAGGAAACAGAAAGAAGTATATGCCCTTAGATACCAAAGGAAAAGTGAGTTCAATGAGAGAAGACAATCTGAAATTGACATTGAAAGAGAAGAGGAATGTGGAGTGTGCTTGGAGGTGAAAGCAAAAGTTGTGCTTCCTAATTGCTGCCACTACATGTGTTTGAAGTGCTACAGAGATTGGTGTCAGAGGTCTCAGTCTTGCCCCTTTTGCCGGGATAGCCTGAAGAGAACCAACTCTGGGGACCTTTGGATTTACACTGACACCAGTGACATTGTTGATGTTGGGACAATTTTCAAAGAGAATTGTAAGATGCTGTTTCTGTACATAGAGAAGCTGCCTCTAATTGTTCCAGATCCCAGATATGTGTTCTATGATCCACTTCTGAGATGA

>Glyma.18g063500.2 sequence-type=CDS polypeptide=Glyma.18g063500.2.p locus=Glyma.18g063500 ID=Glyma.18g063500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTTTCTTTTCGCCTCTTTGTTAGGGCATTAGGCTATCCAAGGGACAAAGATGGAGGATGCTTTCAGATGAGGATATCATACAGTCCAGCAGCCCCTCTTTTTCTGTTTCTTGTTCAATGGACCGATTACCGCCTCGCCGGTGCTCTGGGTTTGCTGAGAATTCTAATTTATGTGACTTATGGAAATGGGAAGAATACTATGTCAATATATGAAAGGAAAGCAAGCATTAGACAATTTTACTCGATTATATTTCCTGCTCTGTTGCAACTTGAGAAAGGCATCACAGATTTGGAGGAAAGGAAACAGAAAGAAGTATATGCCCTTAGATACCAAAGGAAAAGTGAGTTCAATGAGAGAAGACAATCTGAAATTGACATTGAAAGAGAAGAGGAATGTGGAGTGTGCTTGGAGGTGAAAGCAAAAGTTGTGCTTCCTAATTGCTGCCACTACATGTGTTTGAAGTGCTACAGAGATTGGTGTCAGAGGTCTCAGTCTTGCCCCTTTTGCCGGGATAGCCTGAAGAGAACCAACTCTGGGGACCTTTGGATTTACACTGACACCAGTGACATTGTTGATGTTGGGACAATTTTCAAAGAGAATTGTAAGATGCTGTTTCTGTACATAGAGAAGCTGCCTCTAATTGTTCCAGATCCCAGATATGTGTTCTATGATCCACTTCTGAGATGA

>Glyma.18g063500.3 sequence-type=CDS polypeptide=Glyma.18g063500.3.p locus=Glyma.18g063500 ID=Glyma.18g063500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATTAGGCTATCCAAGGGACAAAGATGGAGGATGCTTTCAGATGAGGATATCATACAGTCCAGCAGCCCCTCTTTTTCTGTTTCTTGTTCAATGGACCGATTACCGCCTCGCCGGTGCTCTGGGTTTGCTGAGAATTCTAATTTATGTGACTTATGGAAATGGGAAGAATACTATGTCAATATATGAAAGGAAAGCAAGCATTAGACAATTTTACTCGATTATATTTCCTGCTCTGTTGCAACTTGAGAAAGGCATCACAGATTTGGAGGAAAGGAAACAGAAAGAAGTATATGCCCTTAGATACCAAAGGAAAAGTGAGTTCAATGAGAGAAGACAATCTGAAATTGACATTGAAAGAGAAGAGGAATGTGGAGTGTGCTTGGAGGTGAAAGCAAAAGTTGTGCTTCCTAATTGCTGCCACTACATGTGTTTGAAGTGCTACAGAGATTGGTGTCAGAGGTCTCAGTCTTGCCCCTTTTGCCGGGATAGCCTGAAGAGAACCAACTCTGGGGACCTTTGGATTTACACTGACACCAGTGACATTGTTGATGTTGGGACAATTTTCAAAGAGAATTGTAAGATGCTGTTTCTGTACATAGAGAAGCTGCCTCTAATTGTTCCAGATCCCAGATATGTGTTCTATGATCCACTTCTGAGATGA
Predicted protein sequences of Glyma.18G063500
>Glyma.18g063500.1.p sequence-type=predicted peptide transcript=Glyma.18g063500.1 locus=Glyma.18g063500 ID=Glyma.18g063500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGKGSFQDSVKALEADIQYANTLALGYPRDKDGGCFQMRISYSPAAPLFLFLVQWTDYRLAGALGLLRILIYVTYGNGKNTMSIYERKASIRQFYSIIFPALLQLEKGITDLEERKQKEVYALRYQRKSEFNERRQSEIDIEREEECGVCLEVKAKVVLPNCCHYMCLKCYRDWCQRSQSCPFCRDSLKRTNSGDLWIYTDTSDIVDVGTIFKENCKMLFLYIEKLPLIVPDPRYVFYDPLLR*

>Glyma.18g063500.2.p sequence-type=predicted peptide transcript=Glyma.18g063500.2 locus=Glyma.18g063500 ID=Glyma.18g063500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLSFRLFVRALGYPRDKDGGCFQMRISYSPAAPLFLFLVQWTDYRLAGALGLLRILIYVTYGNGKNTMSIYERKASIRQFYSIIFPALLQLEKGITDLEERKQKEVYALRYQRKSEFNERRQSEIDIEREEECGVCLEVKAKVVLPNCCHYMCLKCYRDWCQRSQSCPFCRDSLKRTNSGDLWIYTDTSDIVDVGTIFKENCKMLFLYIEKLPLIVPDPRYVFYDPLLR*

>Glyma.18g063500.3.p sequence-type=predicted peptide transcript=Glyma.18g063500.3 locus=Glyma.18g063500 ID=Glyma.18g063500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALGYPRDKDGGCFQMRISYSPAAPLFLFLVQWTDYRLAGALGLLRILIYVTYGNGKNTMSIYERKASIRQFYSIIFPALLQLEKGITDLEERKQKEVYALRYQRKSEFNERRQSEIDIEREEECGVCLEVKAKVVLPNCCHYMCLKCYRDWCQRSQSCPFCRDSLKRTNSGDLWIYTDTSDIVDVGTIFKENCKMLFLYIEKLPLIVPDPRYVFYDPLLR*






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