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Report for Sequence Feature Glyma.18G107000

Feature Type:gene_model
Chromosome:Gm18
Start:12028945
stop:12032564
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18G107000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G42910.1AT Phosphoribosyltransferase family protein JGI N/AIEA
GO:0009116GO-bp nucleoside metabolic process EnsemblGenomesN/AIEA
GO:0009116GO-bp nucleoside metabolic process JGI N/AIEA
GO:0009165GO-bp nucleotide biosynthetic process EnsemblGenomesN/AIEA
GO:0009165GO-bp nucleotide biosynthetic process JGI N/AIEA
GO:0000287GO-mf magnesium ion binding EnsemblGenomesN/AIEA
GO:0000287GO-mf magnesium ion binding JGI N/AIEA
GO:0004749GO-mf ribose phosphate diphosphokinase activity EnsemblGenomesN/AIEA
GO:0004749GO-mf ribose phosphate diphosphokinase activity JGI N/AIEA
KOG1448 KOG Ribose-phosphate pyrophosphokinase JGI N/AIEA
PTHR10210Panther RIBOSE-PHOSPHATE PYROPHOSPHOKINASE JGI N/AIEA
PF00156PFAM Phosphoribosyl transferase domain JGI N/AIEA
PWY0-662SoyCyc9 PRPP biosynthesis I Plant Metabolic Network ISS
GN7V-41199SoyCyc9-rxn ribose-phosphate diphosphokinase Plant Metabolic Network ISS

Expression Patterns of Glyma.18G107000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18G107000
ParalogEvidenceComments
Glyma.08g309300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18G107000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g107000 Wm82.a4.v1ISS As supplied by JGI
Glyma18g12740 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18G107000
>Glyma.18g107000.1 sequence-type=CDS polypeptide=Glyma.18g107000.1.p locus=Glyma.18g107000 ID=Glyma.18g107000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAATGGTGAAGTCTCCCAATAAGCAAGTGAACCTCTTCTACTCCCTTGACTGCGAGGACCTTGCCCACAACGTTGCTCTTCAATCACCCAACATCATTCTCCAGAATATCAAATGGAGGTCATTTGCTGATGGATTTCCAAATATATATATAAATAATGCAGAAGAACTCCGAGGTCAACATGTTGCTTTCTTGGCATCTTTCAGCTCCCCTGCACATGTCTTTGAACAACTTTCTGTCATATATGCACTCCCTCGTTTATTTGTTGCTTCCTTCACATTGGTATTGCCTTTCTTTCCCACTGGATCCTTTGAGCGAATGGAGGAAGAAGGAGATGTAGCAACTGCCTTCACCCTTGCTAGGATGTTGTCAAATATTCCAATTTCTAGAGGTGGCCCAACTAGTTTAGTCATATATGACATTCATGCCTTGCAGGAGAGGTTTTATTTTGGAGATGAAGTCTTGCCCTTGTTTGAGACCGGTATTCCTCTCTTAAAGCAACGTCTGAGTCAGCTTCCCGACGCTGATAATGTAGTTATTGCATTTCCAGATGACGGTGCATGGAAGCGATTCCACAAGCAGTTTGATCATTTTTCACTGGTTGTATGTACTAAGGTTCGTGAAGGTGACAAGAGGATAGTTCGGCTCAAGGAAGGCAACGTCTCTGGTCATCATGTAGTCATTGTTGATGATTTGGTCCAATCTGGAGGCACCCTGATTGAGTGTCAGAAAGTTTTGGCAGCCAATGGTGCAGCAAAGGTGAGTGCCTATGTCACCCATGGCGTGTTCCCTAACCAATCATGGGAGCGATTCACTCATAAAAAAGACACCTTGGAGAATGCATTTGCCTACTTCTGGATCACAGATTCTTGCCCTCTTACTGTCAAAGCTATAGCAAATAAAGCTCCTTTTGAAGTGCTGAGTCTAGCCGGGTCTATTGCTAATGCTCTACAAATTTGA
Predicted protein sequences of Glyma.18G107000
>Glyma.18g107000.1.p sequence-type=predicted peptide transcript=Glyma.18g107000.1 locus=Glyma.18g107000 ID=Glyma.18g107000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAMVKSPNKQVNLFYSLDCEDLAHNVALQSPNIILQNIKWRSFADGFPNIYINNAEELRGQHVAFLASFSSPAHVFEQLSVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTLARMLSNIPISRGGPTSLVIYDIHALQERFYFGDEVLPLFETGIPLLKQRLSQLPDADNVVIAFPDDGAWKRFHKQFDHFSLVVCTKVREGDKRIVRLKEGNVSGHHVVIVDDLVQSGGTLIECQKVLAANGAAKVSAYVTHGVFPNQSWERFTHKKDTLENAFAYFWITDSCPLTVKAIANKAPFEVLSLAGSIANALQI*






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