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Report for Sequence Feature Glyma.18g235900

Feature Type:gene_model
Chromosome:Gm18
Start:52443073
stop:52448797
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g235900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G01580.1AT ferric reduction oxidase 2 JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
PTHR11972Panther NADPH OXIDASE JGI N/AIEA
PTHR11972:SF3Panther JGI N/AIEA
PF01794PFAM Ferric reductase like transmembrane component JGI N/AIEA
PF08022PFAM FAD-binding domain JGI N/AIEA
PF08030PFAM Ferric reductase NAD binding domain JGI N/AIEA
GN7V-61812SoyCyc9-rxn ferric-chelate reductase (NADH) Plant Metabolic Network ISS

Expression Patterns of Glyma.18g235900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.18g235900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g47060 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g235900
>Glyma.18g235900.1 sequence-type=CDS polypeptide=Glyma.18g235900.1.p locus=Glyma.18g235900 ID=Glyma.18g235900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATGTAGAAGCGGTGAAAAGGTCTCCTTCTCAAGAAAAATATGGCAGGGTTCAATCTGCAATAAGGTTGTTAGTGCTGGTTGTGTTTCTGGGTTGGATTTTCGTATGGATAGTGACTCCAACAAACACTTACCAACAAAAATGGCAGCCTCGGCTTCAAGCAAAGACTAATTCTATTTTTGGTGCACAAGGTGCAATGCTTCTGGTATACACTTTTCCAATCTTGTTCATAGCTGTTTTGGGATGTGTGTACGTTCACATAGCCAAAAAAGGAAACGGTTTCGGCAAGGAAAGCTGCAGTAGTTATGGCAAGAAACGTGAGGTATCTATATGGAAGCGTTTGGTGCTTGTGAGAGGCCCTCTTGGCATAGTTTCTGGAACAGAAATGGTCTTCTTGTTAATGTTCATTGTTCTCCTAGTTTGGTCCTTTTCAATCTATCTGCATAATGGCTTTGCCAAAATCACCCACAAATCAGCAGCAGAACACGGTCTAAAAGTCTGGGAGAAGAAACTAGATATTGCATCTGTGAGGTTGGCCCTAGTTGGGAACATATGCTTGGCATTCCTGTTTTTCCCGGTTGCTCGTGGTTCCTCAGTGCTACCTCTGCTTGGACTCACACCAGAGAGTTGCATCAAATACCATATTTGGCTAGGAAACGTGGCCATGACCCTTTTCACTGCTCATGGTATTTGTTTCATCATCTATTGGACAGTTACCGATAAACTTTCAAAGATGCTAGAATGGAAAAAAACTGGGATATCAAATGTAGCTGGAGAGGTTGCTTTGCTTGCTGGTTTGTGCATGTGGATTGCAACCATCCCTCGCAATAGGCGAAAAGTTTTTGAGCTCTTCTTCTACACTCACTACCTCTACACCCTCTTCATTGTCTTCTTCATCTTTCACGTGGGCATTTTCTATGCATGCACTATTCTCCCCGGTTTCTACCTCTTCTTGGTTGATCGGTACCTAAGGTTTTTGCAATCAAGACGCCGAGTTCGTTTGGTTTCTGCTCGTGTTTTACCATGTGAAACTGTAGAACTCAACTTCTCCAAGAGCCATGATTTGACTTATAATCCCACAAGTATTATGTTCATAAATGTACCAAGTATATCCAAACTTCAGTGGCATCCATTTACCATTACTTCTAATAGTAATTTGGAGCCAAAAATGATGAGTATTGTCATTAAAGGTGAAGGAACTTGGTCCCAGAAGCTCTACCAGATGCTTTCAACCCCTTCTGCAATTGATCATCTCAATGTCTCAGTTGAAGGTCCCTATGGACCAGCATCAACCAATTATCTAAGGTATGACACTATTGTGATGGTTAGTGGAGGGAGTGGAATCACCCCTTTTATATCCATCATCCGGGAGCTATTGTATTTGAACACAACATTCAGATATAGAACCCCAAAAGTTATCCTAATTTGTGCATTCAAGAACTCTTACTATCTCTCAATGCTAGACCTCATCCTTCCAAATTCTGGCACCCCCTATGATATGTCCAACATGCAACTACAAATTAAGGCTTACATCACAAGAAAGGAGGAGCATAGATTGGAAAACCAAATTCACCTTCAACAAATATGGTTCAAACCCAAGGCAACAGATGCACCCATATCAGCTATTTTAGGTCCAAACAATTGGCTTTGGCTTTGTGCTATAATCTCGTCCTCGTTCATAATTTTCCTCATCTTAATTGGGATCATTACCCGATTCATCATTTTCCCTATAGACCATAATTCTAATAAAATATTTTCACAACCTTTGAGGTCATTCCTCAACATTTTTGCAATATGTGTGTCCATATCAATGGCAGCTAGTGCAGCTGTTCTTTGGAACAAGAAATACAACGACAGAGAAGCAAAACAGATTCAGAACTTAGAAGGATCATCATCAGCAGAATCCCCAAAGTTGAATACTGATGAAGGAGATAAAGAACTGGAAAGCCTCCCACAGCAATCCCTTGTTCAAGCTACAAAGGTGCATTATGGAGCAAGACCTGATCTAAGAAGACTGCTATTGGAACTTGAAGGGTCAAGAGTGGGAGTTTTTGTTTCTGGACCCAAGAAAATGAGGCAAGAGGTTGCTGCCATTTGCTCATCTGATTTAGGAGAAAATCTGCATTTTGAATCCTTTAGCTTTAACTGGTAG
Predicted protein sequences of Glyma.18g235900
>Glyma.18g235900.1.p sequence-type=predicted peptide transcript=Glyma.18g235900.1 locus=Glyma.18g235900 ID=Glyma.18g235900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDVEAVKRSPSQEKYGRVQSAIRLLVLVVFLGWIFVWIVTPTNTYQQKWQPRLQAKTNSIFGAQGAMLLVYTFPILFIAVLGCVYVHIAKKGNGFGKESCSSYGKKREVSIWKRLVLVRGPLGIVSGTEMVFLLMFIVLLVWSFSIYLHNGFAKITHKSAAEHGLKVWEKKLDIASVRLALVGNICLAFLFFPVARGSSVLPLLGLTPESCIKYHIWLGNVAMTLFTAHGICFIIYWTVTDKLSKMLEWKKTGISNVAGEVALLAGLCMWIATIPRNRRKVFELFFYTHYLYTLFIVFFIFHVGIFYACTILPGFYLFLVDRYLRFLQSRRRVRLVSARVLPCETVELNFSKSHDLTYNPTSIMFINVPSISKLQWHPFTITSNSNLEPKMMSIVIKGEGTWSQKLYQMLSTPSAIDHLNVSVEGPYGPASTNYLRYDTIVMVSGGSGITPFISIIRELLYLNTTFRYRTPKVILICAFKNSYYLSMLDLILPNSGTPYDMSNMQLQIKAYITRKEEHRLENQIHLQQIWFKPKATDAPISAILGPNNWLWLCAIISSSFIIFLILIGIITRFIIFPIDHNSNKIFSQPLRSFLNIFAICVSISMAASAAVLWNKKYNDREAKQIQNLEGSSSAESPKLNTDEGDKELESLPQQSLVQATKVHYGARPDLRRLLLELEGSRVGVFVSGPKKMRQEVAAICSSDLGENLHFESFSFNW*






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