Glyma.18g261900

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Report for Sequence Feature Glyma.18g261900

Feature Type:	gene_model
Chromosome:	Gm18
Start:	54775190
stop:	54781535
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.18g261900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G29060.1	AT	EXS (ERD1/XPR1/SYG1) family protein	JGI	N/A	IEA
GO:0005802	GO-cc	trans-Golgi network	EnsemblGenomes	N/A	IEA
GO:0005886	GO-cc	plasma membrane	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	JGI	N/A	IEA
KOG1162	KOG	Predicted small molecule transporter	JGI	N/A	IEA
PTHR10783	Panther	XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED	JGI	N/A	IEA
PTHR10783:SF4	Panther	XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1	JGI	N/A	IEA
PF03105	PFAM	SPX domain	JGI	N/A	IEA
PF03124	PFAM	EXS family	JGI	N/A	IEA

Proteins Associated with Glyma.18g261900

Locus	Gene Symbol	Protein Name
	PHO1-H6	PHO1 family protein

Expression Patterns of Glyma.18g261900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.18g261900

Paralog	Evidence	Comments
Glyma.09g235200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g261900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma18g49680	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.18g261900

Limit To All Plant Sequences

>Glyma.18g261900.2 sequence-type=transcript locus=Glyma.18g261900 ID=Glyma.18g261900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TATGCCCCCATTACGCGGAAACAATGCAAGATGTATTATTCTCCAACCTATATTCATTGCAGCTCAGAAATGATGTTTCTCTAAGCTTCATTAAAAATTGAAATCTATAACTCTTTATTCTTTTTGGCTGAAGCACAAGTGTCTCACTCGAAAAAAAGAAAATATGAAGTTTGGGAAAGAATTTGTCTCACAAATGGTGCCAGAATGGGAAGAAGCATACATGGATTACAACTCTCTCAAAGCCACTCTGAAAAACATGTCAAAGTTTAGAGAGCTAAACGAGTCAGCACCAATGGCATCCACACCAAAAGGGTCTCTGAAGAGAAGGTTAACACTCTATAGAGCCTTTAGTGGTCTTACTGATAGACAAAGAGGGTCTCCTAGGAAGGGTGAGGATGAAGTTATACTTGTTCGTGCTGAGGAGGGTGAAGGCTCAGAAGGGTTGTATCAGACCATGTTCCTCAAGCCTTCTGAAGAAGGGGCAGAACAAGATCTTGTGTTTTTCAAGAAACTTGATCATGAGTTTAATAAGGTGAATAGCTTCTACAAGAAAATGGTGAATGGAATGGTTGAGGAGGCAGAGGAGTTGAGTAAGCAAATGAATGCTCTGATTGCTCTTAGAATAAAGGTGGACAATGTGGGGTTCAGAAATCTTGGTAGCAATGGGATCTCAACTTCATTTTCCATGAATCATGATATAAATGATGCAAAAACTGGTCTCTCACGTGTGCACATGGATGTGATTCATGAAGTTGAGATGAGCAATGGAACGCATTTGGAAAATGGAAGTGGAAATTATGAGGAACAAACCACTTCTAAGACTTCTGTTGGGGCCTTTAGACCTGCTTCATTGGAGACCCTTGATCACGTGAAGATCAACATGACCACACCAGAAACTCCTTTGTCAACCATAAAAGGGCTTCTCTCAAGTTCAAAATCTGACCAGTCATTTAGCAAGAAAGAGCTCAGGAAAGCTGAGGAACAAATAAGCATAGCCTTAAAGGAATTCTATAATAAGCTTCGGCTTCTAAAAAGCTATAGCTTCTTAAACTTGTTGGCATTCTCAAAAATCATGAAGAAGTATGACAAGGTTAGTTCAAGGAATGCATCAAAGGATTACTTAAAGATGGTGGACAGTTCATATGTTGGAAGCTCAGATGAGGTCAATAGGCTCATGGAAAGGGTGGAACATGCCTTCATTAAGCACTTTGCAAATGGGAATCACAGAAAGGGAATGAACACATTGAGACCAACTGCTAAGAAGGAGCGGCATAGAATTACATTCTTATTGGGACTGTTTACTGGCTGCTCAATTGCCCTCATTGTGGCACTGATTATACTAATACATGCAAGAAATATTCTATATAGCGAGGGTCGTACTAGATATATGGACAACATATTTCCTCTTTACAGTCTCTTTGGATACATAGTCTTGCATATGATCATTTACTCTGCAAATATATACCTATGGAGGCGTTATAAAATCAACTTCCCCTTTATATTTGGCTTCAAGGAAGGAACAGAATTGGGATACAGAGAAGTCTTTCTTCTTAGCTCAGGCCTCGCAGTACTCTCATTGGCTGCTGTCCTCTCAAACTTGGATATGGAGATGGACCAGAGAACAAAAAGTTTTTCAGCATTGACAGAATTAGTCCCTTTATGCCTTGTCATTGTTCTGCTGCTCATAACATTTTGTCCCTTCAACATCATATATAAATCCAGCCGCTTCTTCCTTATTCAGTGTGCATTTCATTGTGTTTGTGCTCCTCTTTACAAGGTCAATTTCCCAGAAAATTTCTTGGCAGACCAGCTTACCAGCCAGGTGCAGGCCTTTAGAAGTTTGGAATTCTATGTTTGCTACTATTTCTGGGGAAACTTCAAGACCAGATCAAACAACTGCCTCAAAAGTGATGTCTACAAAGCATTTTACTTAATTGTAGCTATTATTCCATTCTGGATCCGTTGTCTTCAGTGCTTTCGACGCTTGCTTGAAGAAAGAAATACAATGCATGGGCTCAATGGGCTAAAATACATCTCAACAGTAGTAGCACTTGTCTTGAGGACTACCAATGAGTTCCAAAGAGGAATGGTTTGGAAAATTCTAGCTGCAACTTCTTCAGGCATTGCAACGATTGTTAATACATATTGGGATATTGTCATAGATTGGGGTTTGCTGAGAAGGAATTCAAGAAATCCATGGTTGAGAGAAAAACTCTCTGTACCAAACAAAAATGTATATTTTGTTGCTATGGTGTTGAATGTTATACTGCGACTTGCATGGATGCAATCTGTTTTAGGCATTAGGGAAACTCCTATCCTGCATAGAACAGCTTTGACTGCTCTAGTAACTTGCTTGGAGATCCTTCGCCGTGGCATATGGAATTTTTTCAGGTTGGAGAATGAGCACTTGAACAATGTCGGCAACTATCGAGCATTCAAATCAGTACCCCTGCCTTTTAATTACGAAGATGAGGAAGAGAATACAGTCATATAAACATATGTGGGAATGAGGAGGAGGGAGCCATGAAAATACTAAAAGGTGACGAAAAGCAGGAAACTAAAATGAAGATAGCAAGATTGGCTTAAACAGAGTAATAGGGGAAGAGGGGTTCTACCCTTGTTATTCATATTGATTTCAATGTAATTTTTCCTATCTTTATGAGATAAGTTACTTGGCTGACTTGTCGTATATGTAAAGGAAACAAAGTCATATGTAAGGGTCTAACAAATGCTGGATTATTAATTTATGTGTGGATTAACATTATTTAATTTAAAATGATTTTTGAATTATTAAATATATTAATTAAAATCAGATCTCAATCACAACTTATG

Coding sequences of Glyma.18g261900

Limit To All Plant Sequences

>Glyma.18g261900.1 sequence-type=CDS polypeptide=Glyma.18g261900.1.p locus=Glyma.18g261900 ID=Glyma.18g261900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGTTTGGGAAAGAATTTGTCTCACAAATGGTGCCAGAATGGGAAGAAGCATACATGGATTACAACTCTCTCAAAGCCACTCTGAAAAACATGTCAAAGTTTAGAGAGCTAAACGAGTCAGCACCAATGGCATCCACACCAAAAGGGTCTCTGAAGAGAAGGTTAACACTCTATAGAGCCTTTAGTGGTCTTACTGATAGACAAAGAGGGTCTCCTAGGAAGGGTGAGGATGAAGTTATACTTGTTCGTGCTGAGGAGGGTGAAGGCTCAGAAGGGTTGTATCAGACCATGTTCCTCAAGCCTTCTGAAGAAGGGGCAGAACAAGATCTTGTGTTTTTCAAGAAACTTGATCATGAGTTTAATAAGGTGAATAGCTTCTACAAGAAAATGGTGAATGGAATGGTTGAGGAGGCAGAGGAGTTGAGTAAGCAAATGAATGCTCTGATTGCTCTTAGAATAAAGGTGGACAATGTGGGGTTCAGAAATCTTGGTAGCAATGGGATCTCAACTTCATTTTCCATGAATCATGATATAAATGATGCAAAAACTGGTCTCTCACGTGTGCACATGGATGTGATTCATGAAGTTGAGATGAGCAATGGAACGCATTTGGAAAATGGAAGTGGAAATTATGAGGAACAAACCACTTCTAAGACTTCTGTTGGGGCCTTTAGACCTGCTTCATTGGAGACCCTTGATCACGTGAAGATCAACATGACCACACCAGAAACTCCTTTGTCAACCATAAAAGGGCTTCTCTCAAGTTCAAAATCTGACCAGTCATTTAGCAAGAAAGAGCTCAGGAAAGCTGAGGAACAAATAAGCATAGCCTTAAAGGAATTCTATAATAAGCTTCGGCTTCTAAAAAGCTATAGCTTCTTAAACTTGTTGGCATTCTCAAAAATCATGAAGAAGTATGACAAGGTTAGTTCAAGGAATGCATCAAAGGATTACTTAAAGATGGTGGACAGTTCATATGTTGGAAGCTCAGATGAGGTCAATAGGCTCATGGAAAGGGTGGAACATGCCTTCATTAAGCACTTTGCAAATGGGAATCACAGAAAGGGAATGAACACATTGAGACCAACTGCTAAGAAGGAGCGGCATAGAATTACATTCTTATTGGGACTGTTTACTGGCTGCTCAATTGCCCTCATTGTGGCACTGATTATACTAATACATGCAAGAAATATTCTATATAGCGAGGGTCGTACTAGATATATGGACAACATATTTCCTCTTTACAGTCTCTTTGGATACATAGTCTTGCATATGATCATTTACTCTGCAAATATATACCTATGGAGGCGTTATAAAATCAACTTCCCCTTTATATTTGGCTTCAAGGAAGGAACAGAATTGGGATACAGAGAAGTCTTTCTTCTTAGCTCAGGCCTCGCAGTACTCTCATTGGCTGCTGTCCTCTCAAACTTGGATATGGAGATGGACCAGAGAACAAAAAGTTTTTCAGCATTGACAGAATTAGTCCCTTTATGCCTTGTCATTGTTCTGCTGCTCATAACATTTTGTCCCTTCAACATCATATATAAATCCAGCCGCTTCTTCCTTATTCAGTGTGCATTTCATTGTGTTTGTGCTCCTCTTTACAAGGTCAATTTCCCAGAAAATTTCTTGGCAGACCAGCTTACCAGCCAGGTGCAGGCCTTTAGAAGTTTGGAATTCTATGTTTGCTACTATTTCTGGGGAAACTTCAAGACCAGATCAAACAACTGCCTCAAAAGTGATGTCTACAAAGCATTTTACTTAATTGTAGCTATTATTCCATTCTGGATCCGTTGTCTTCAGTGCTTTCGACGCTTGCTTGAAGAAAGAAATACAATGCATGGGCTCAATGGGCTAAAATACATCTCAACAGTAGTAGCACTTGTCTTGAGGACTACCAATGAGTTCCAAAGAGGAATGGTTTGGAAAATTCTAGCTGCAACTTCTTCAGGCATTGCAACGATTGTTAATACATATTGGGATATTGTCATAGATTGGGGTTTGCTGAGAAGGAATTCAAGAAATCCATGGTTGAGAGAAAAACTCTCTGTACCAAACAAAAATGTATATTTTGTTGCTATGGTGTTGAATGTTATACTGCGACTTGCATGGATGCAATCTGTTTTAGGCATTAGGGAAACTCCTATCCTGCATAGAACAGCTTTGACTGCTCTAGTAACTTGCTTGGAGATCCTTCGCCGTGGCATATGGAATTTTTTCAGGTTGGAGAATGAGCACTTGAACAATGTCGGCAACTATCGAGCATTCAAATCAGTACCCCTGCCTTTTAATTACGAAGATGAGGAAGAGAATACAGTCATATAA

>Glyma.18g261900.2 sequence-type=CDS polypeptide=Glyma.18g261900.2.p locus=Glyma.18g261900 ID=Glyma.18g261900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGTTTGGGAAAGAATTTGTCTCACAAATGGTGCCAGAATGGGAAGAAGCATACATGGATTACAACTCTCTCAAAGCCACTCTGAAAAACATGTCAAAGTTTAGAGAGCTAAACGAGTCAGCACCAATGGCATCCACACCAAAAGGGTCTCTGAAGAGAAGGTTAACACTCTATAGAGCCTTTAGTGGTCTTACTGATAGACAAAGAGGGTCTCCTAGGAAGGGTGAGGATGAAGTTATACTTGTTCGTGCTGAGGAGGGTGAAGGCTCAGAAGGGTTGTATCAGACCATGTTCCTCAAGCCTTCTGAAGAAGGGGCAGAACAAGATCTTGTGTTTTTCAAGAAACTTGATCATGAGTTTAATAAGGTGAATAGCTTCTACAAGAAAATGGTGAATGGAATGGTTGAGGAGGCAGAGGAGTTGAGTAAGCAAATGAATGCTCTGATTGCTCTTAGAATAAAGGTGGACAATGTGGGGTTCAGAAATCTTGGTAGCAATGGGATCTCAACTTCATTTTCCATGAATCATGATATAAATGATGCAAAAACTGGTCTCTCACGTGTGCACATGGATGTGATTCATGAAGTTGAGATGAGCAATGGAACGCATTTGGAAAATGGAAGTGGAAATTATGAGGAACAAACCACTTCTAAGACTTCTGTTGGGGCCTTTAGACCTGCTTCATTGGAGACCCTTGATCACGTGAAGATCAACATGACCACACCAGAAACTCCTTTGTCAACCATAAAAGGGCTTCTCTCAAGTTCAAAATCTGACCAGTCATTTAGCAAGAAAGAGCTCAGGAAAGCTGAGGAACAAATAAGCATAGCCTTAAAGGAATTCTATAATAAGCTTCGGCTTCTAAAAAGCTATAGCTTCTTAAACTTGTTGGCATTCTCAAAAATCATGAAGAAGTATGACAAGGTTAGTTCAAGGAATGCATCAAAGGATTACTTAAAGATGGTGGACAGTTCATATGTTGGAAGCTCAGATGAGGTCAATAGGCTCATGGAAAGGGTGGAACATGCCTTCATTAAGCACTTTGCAAATGGGAATCACAGAAAGGGAATGAACACATTGAGACCAACTGCTAAGAAGGAGCGGCATAGAATTACATTCTTATTGGGACTGTTTACTGGCTGCTCAATTGCCCTCATTGTGGCACTGATTATACTAATACATGCAAGAAATATTCTATATAGCGAGGGTCGTACTAGATATATGGACAACATATTTCCTCTTTACAGTCTCTTTGGATACATAGTCTTGCATATGATCATTTACTCTGCAAATATATACCTATGGAGGCGTTATAAAATCAACTTCCCCTTTATATTTGGCTTCAAGGAAGGAACAGAATTGGGATACAGAGAAGTCTTTCTTCTTAGCTCAGGCCTCGCAGTACTCTCATTGGCTGCTGTCCTCTCAAACTTGGATATGGAGATGGACCAGAGAACAAAAAGTTTTTCAGCATTGACAGAATTAGTCCCTTTATGCCTTGTCATTGTTCTGCTGCTCATAACATTTTGTCCCTTCAACATCATATATAAATCCAGCCGCTTCTTCCTTATTCAGTGTGCATTTCATTGTGTTTGTGCTCCTCTTTACAAGGTCAATTTCCCAGAAAATTTCTTGGCAGACCAGCTTACCAGCCAGGTGCAGGCCTTTAGAAGTTTGGAATTCTATGTTTGCTACTATTTCTGGGGAAACTTCAAGACCAGATCAAACAACTGCCTCAAAAGTGATGTCTACAAAGCATTTTACTTAATTGTAGCTATTATTCCATTCTGGATCCGTTGTCTTCAGTGCTTTCGACGCTTGCTTGAAGAAAGAAATACAATGCATGGGCTCAATGGGCTAAAATACATCTCAACAGTAGTAGCACTTGTCTTGAGGACTACCAATGAGTTCCAAAGAGGAATGGTTTGGAAAATTCTAGCTGCAACTTCTTCAGGCATTGCAACGATTGTTAATACATATTGGGATATTGTCATAGATTGGGGTTTGCTGAGAAGGAATTCAAGAAATCCATGGTTGAGAGAAAAACTCTCTGTACCAAACAAAAATGTATATTTTGTTGCTATGGTGTTGAATGTTATACTGCGACTTGCATGGATGCAATCTGTTTTAGGCATTAGGGAAACTCCTATCCTGCATAGAACAGCTTTGACTGCTCTAGTAACTTGCTTGGAGATCCTTCGCCGTGGCATATGGAATTTTTTCAGGTTGGAGAATGAGCACTTGAACAATGTCGGCAACTATCGAGCATTCAAATCAGTACCCCTGCCTTTTAATTACGAAGATGAGGAAGAGAATACAGTCATATAA

Predicted protein sequences of Glyma.18g261900

Limit To All Plant Sequences

>Glyma.18g261900.1.p sequence-type=predicted peptide transcript=Glyma.18g261900.1 locus=Glyma.18g261900 ID=Glyma.18g261900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKFGKEFVSQMVPEWEEAYMDYNSLKATLKNMSKFRELNESAPMASTPKGSLKRRLTLYRAFSGLTDRQRGSPRKGEDEVILVRAEEGEGSEGLYQTMFLKPSEEGAEQDLVFFKKLDHEFNKVNSFYKKMVNGMVEEAEELSKQMNALIALRIKVDNVGFRNLGSNGISTSFSMNHDINDAKTGLSRVHMDVIHEVEMSNGTHLENGSGNYEEQTTSKTSVGAFRPASLETLDHVKINMTTPETPLSTIKGLLSSSKSDQSFSKKELRKAEEQISIALKEFYNKLRLLKSYSFLNLLAFSKIMKKYDKVSSRNASKDYLKMVDSSYVGSSDEVNRLMERVEHAFIKHFANGNHRKGMNTLRPTAKKERHRITFLLGLFTGCSIALIVALIILIHARNILYSEGRTRYMDNIFPLYSLFGYIVLHMIIYSANIYLWRRYKINFPFIFGFKEGTELGYREVFLLSSGLAVLSLAAVLSNLDMEMDQRTKSFSALTELVPLCLVIVLLLITFCPFNIIYKSSRFFLIQCAFHCVCAPLYKVNFPENFLADQLTSQVQAFRSLEFYVCYYFWGNFKTRSNNCLKSDVYKAFYLIVAIIPFWIRCLQCFRRLLEERNTMHGLNGLKYISTVVALVLRTTNEFQRGMVWKILAATSSGIATIVNTYWDIVIDWGLLRRNSRNPWLREKLSVPNKNVYFVAMVLNVILRLAWMQSVLGIRETPILHRTALTALVTCLEILRRGIWNFFRLENEHLNNVGNYRAFKSVPLPFNYEDEEENTVI*

>Glyma.18g261900.2.p sequence-type=predicted peptide transcript=Glyma.18g261900.2 locus=Glyma.18g261900 ID=Glyma.18g261900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKFGKEFVSQMVPEWEEAYMDYNSLKATLKNMSKFRELNESAPMASTPKGSLKRRLTLYRAFSGLTDRQRGSPRKGEDEVILVRAEEGEGSEGLYQTMFLKPSEEGAEQDLVFFKKLDHEFNKVNSFYKKMVNGMVEEAEELSKQMNALIALRIKVDNVGFRNLGSNGISTSFSMNHDINDAKTGLSRVHMDVIHEVEMSNGTHLENGSGNYEEQTTSKTSVGAFRPASLETLDHVKINMTTPETPLSTIKGLLSSSKSDQSFSKKELRKAEEQISIALKEFYNKLRLLKSYSFLNLLAFSKIMKKYDKVSSRNASKDYLKMVDSSYVGSSDEVNRLMERVEHAFIKHFANGNHRKGMNTLRPTAKKERHRITFLLGLFTGCSIALIVALIILIHARNILYSEGRTRYMDNIFPLYSLFGYIVLHMIIYSANIYLWRRYKINFPFIFGFKEGTELGYREVFLLSSGLAVLSLAAVLSNLDMEMDQRTKSFSALTELVPLCLVIVLLLITFCPFNIIYKSSRFFLIQCAFHCVCAPLYKVNFPENFLADQLTSQVQAFRSLEFYVCYYFWGNFKTRSNNCLKSDVYKAFYLIVAIIPFWIRCLQCFRRLLEERNTMHGLNGLKYISTVVALVLRTTNEFQRGMVWKILAATSSGIATIVNTYWDIVIDWGLLRRNSRNPWLREKLSVPNKNVYFVAMVLNVILRLAWMQSVLGIRETPILHRTALTALVTCLEILRRGIWNFFRLENEHLNNVGNYRAFKSVPLPFNYEDEEENTVI*

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