SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.18g280200

Feature Type:gene_model
Chromosome:Gm18
Start:56100685
stop:56107771
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g280200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G38560.1AT Protein kinase superfamily protein JGI N/AIEA
GO:0006468GO-bp protein phosphorylation EnsemblGenomesN/AIEA
GO:0006468GO-bp protein phosphorylation JGI N/AIEA
GO:0007166GO-bp cell surface receptor signaling pathway EnsemblGenomesN/AIEA
GO:0007178GO-bp transmembrane receptor protein serine/threonine kinase signaling pathway EnsemblGenomesN/AIEA
GO:0005886GO-cc plasma membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity JGI N/AIEA
GO:0004675GO-mf transmembrane receptor protein serine/threonine kinase activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
KOG1187 KOG Serine/threonine protein kinase JGI N/AIEA
PTHR24420Panther LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE JGI N/AIEA
PTHR24420:SF644Panther LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXL1-RELATED JGI N/AIEA
PF00069PFAM Protein kinase domain JGI N/AIEA
PF07714PFAM Protein tyrosine kinase JGI N/AIEA

Expression Patterns of Glyma.18g280200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g280200
ParalogEvidenceComments
Glyma.08g256200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g280200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g51520 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g280200
>Glyma.18g280200.2 sequence-type=transcript locus=Glyma.18g280200 ID=Glyma.18g280200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
taaaaacaaaacaaaaTCATATACGGTTGAATGATTGTTTGTCCCAATTTTCAATTGGGACACGACCTTTTTTCTTTGGCAATGCATGTGAGTGAAGAAGGACTGACATAGAGAGAGAGTGAAACGGTGCCTATTCTGAAAGTCGTCTCCACGTTCTCCTTTGCGCATATTGTGGGGTGTGCTGTGCTGTGTGTGCCACTATTGTCATATTCCGCAAAATGAGCTTTTTCCTGTAGAGTTCTGAACCTTCCTTTCTTTTGTACATGCAAGGACCCTCTTGGCCGATATTGCTGAAGGTTGCATTTTTAGGTCATTAGTGAGTTTCGGAGATCTGGGTATGTTGCAAGCTGCATTTTGGCAACGCCAGTGTGTTAGAGCAGTGACAAATCTGGGCCATAATAATGCTTGGAGATTAGATGCTCCTTGATTTGCAAAAAGGTTTTGTTTCATAAGCTGGGTTTCTTTTCCCACTGAATTTGCTTTTTGTCAGGTGTTGTACCCTACAAAAGCATTAGCTCTTCTTGAAAGTAGTTTGTGGGTATTGACTTTTTGCACTTTGCCAAAGTTAAGTTTTTTATTATTTTTTATTTTCAAGAAATTGGGTTGTCTTCGTCGTTGTGTTGTTTTTTTTTTTCTCTGAAGAAATTTGAGCATTGCCAGTGGAATGGTTGATCTGAAATCTTAAGTTGATGCTTGATATGGGGTGTTGTGATGAAATTTGATTCTGGGAAAAGATCGGAAATTGGAGAGTTTTAGTGAGTGGTTTTGGAAAGTATCATCATCAAAGTAGTGGTGACGGAATTGTTTAACTTTAACTAGTACATTTTGTTCTTGAGGGAAGATTTGTGCAGTGATGGCTTCAGCAAACCCTTCCCCAAATGCTTCCCCTGTTGCAGTGCCTCCAGCACTTGGTGCTATTTTATCACCACCTCCTTCTTCATCTTCTCCAACAAACACTTCCACCCCACCATCACCTCCCAGTTCTTCTCAGCCTAATcaaacacaaacacaaacacaaacacCCAATtcccctgctccttcatctccttctgacccttctgctccacctccttctcctcctcAGGCAGTGCCATTAACCCCTCCTCCTTCCATATCACTGTCTCCTCCACCATCATCTACACCACCACCAACTTTGCCCCCTCCATCACCACCTGATTCTCCACCACCATTGCCACCTGCATCTCCAACCCCACCAGTTACAACATCTCCCCCCTCACCACCAGTTACAACATCTCCCCCCTCACCACCAGCTACCACATCCCCTCCTCCAGCTGAAACTCCACCTTCCCTTCCAAATTTGTCTCCACCATCTCCACCAGCCGGTTCCCCTCCTCCTCAATCACCTCCCACAACAATTCCACCTCCCTCTCGACCGATTTCGCCATCTCCTCCTCCTCCGGCCAATTTTCCAAGGCCACCAACCACTAGAACTCCTCCAGAGAAAGAAAATCCACCAAAAACTACTCCTTCACATGCATCTCCTCCATCAGTTTCTGAAACTCCTCCTAAACCTCCTTCCTCTGATGTTCCCCCTCCATCCACATTGCCTTCAACTCCTCCTTCAGACCCTTCAGGATCTTCACCTCCAGCTTCTTTGCCTGATCCCCCAACTAATAAAACAGTGGTGGGGGGTCCGAAGGTGTCGCTACCCTCTCTTCCAACTGAGAAACCCACTGCTAGACCTACTAATGATGGTACTAACAGTATGTCTTCAAACAACACACCTTCACATTCTGGAGGGTTGAGCACTGGAGGATCTGTGGCTATTGGAATTGTAGTTGGTTTTATTGTCCTCAGCCTTCTTGTTATGGCTGTGTGGTTTGCACAGAAGAAAAAGAAGAAGGGAACAGGATCAAGAGGTAGTTATGCTGCTCCTTCTCCATTTACCTCATCCCACAATTCAGGTACCTTATTCTTGAGGCCGCAGTCTCCGGCCAACTTTTTAGGTAGTGGCTCTGGTAGTGATTTTGTATATTCTCCATCAGAGCCTGGTGGTGTAAGTAGTTCAAGATCATGGTTCACATATGAAGAACTTATTCAAGCTACAAATGGGTTTTCAGCACAAAATTTGTTGGGAGAAGGTGGATTTGGCTGTGTTTATAAAGGTTTGCTGATAGATGGAAGAGAAGTAGCTGTGAAACAGCTCAAAATTGGTGGTGGGCAAGGGGAACGCGAATTCAGGGCAGAAGTTGAGATTATTAGCCGTGTACATCATCGTCATCTGGTTTCTTTAGTTGGTTACTGTATATCCGAGCATCAGAGATTGCTTGTATATGACTATGTTCCCAACGATACTCTTCATTACCATCTCCACGGTGAAAATAGACCAGTTCTAGATTGGCCTACCAGAGTCAAGGTTGCTGCTGGTGCAGCTCGTGGAATAGCTTACTTGCATGAAGACTGTCATCCACGCATTATTCATCGAGATATTAAGTCATCAAACATCCTACTTGATCTCAACTATGAAGCTCAAGTACATGGCACCAGAATATGCGACAAGTGGAAAACTTACTGAAAAGTCTGATGTATATTCTTTTGGGGTTGTGCTTTTGGAGCTAATTACAGGTCGGAAGCCTGTAGATGCATCTCAACCAATTGGTGATGAGAGCCTGGTTGAATGGGCTCGACCTCTGTTGACGGAAGCACTTGACAATGAGGACTTTGAAATTTTGGTGGATCCAAGACTGGGGAAGAACTACGATAGAAATGAAATGTTTCGGATGATCGAGGCTGCCGCAGCCTGTGTACGCCACTCATCGGTGAAGAGACCACGCATGAGTCAGGTGGTGAGAGCTTTAGATTCCTTGGATGAGTTTACGGATCTCAATAACGGAATGAAACCGGGACAGAGTTCGGTGTTTGATTCGGCGCAGCAATCTGCACAAATCAGAATGTTTAGGAGGATGGCTTTTGGGAGCCAAGATAGTTCCGGTTTCTTCAATGAGTCTCAGAGTAGCTGGAGGAGTAGAGATCACGACCCAACAACTGTCTTCTCCCAAAATAAAACTGGGCATGGGAACGTTTGAGTGACATGACTCACTCACTCTTTCTTTAAGGGATTGCATGCACACAGCACCCACCTGTCAATGCATTTCCTGTGGTGTAAATCTCATTTTTACTATTTTTGTTCTCATTTTCCTAACATGATTTTGCTTGCTATGGCCCTTTGTATTCTTTGTAAATTAGGCTATTTGTTACATAACGCAATGTATTTATTTATTCATGTATAATACCATGATCGATCTGAATTCAACACTGCCCTTAAAATCACAATTTATGCTTATATATTGTTTTTGTTTGTAGGGAAAGAGAGTAAAAAAGAGAGAAATGAACAATGAAATAACAAGAGTTTCACACTTTTACATCCAATTT
Coding sequences of Glyma.18g280200
>Glyma.18g280200.1 sequence-type=CDS polypeptide=Glyma.18g280200.1.p locus=Glyma.18g280200 ID=Glyma.18g280200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCAGCAAACCCTTCCCCAAATGCTTCCCCTGTTGCAGTGCCTCCAGCACTTGGTGCTATTTTATCACCACCTCCTTCTTCATCTTCTCCAACAAACACTTCCACCCCACCATCACCTCCCAGTTCTTCTCAGCCTAATCAAACACAAACACAAACACAAACACCCAATTCCCCTGCTCCTTCATCTCCTTCTGACCCTTCTGCTCCACCTCCTTCTCCTCCTCAGGCAGTGCCATTAACCCCTCCTCCTTCCATATCACTGTCTCCTCCACCATCATCTACACCACCACCAACTTTGCCCCCTCCATCACCACCTGATTCTCCACCACCATTGCCACCTGCATCTCCAACCCCACCAGTTACAACATCTCCCCCCTCACCACCAGTTACAACATCTCCCCCCTCACCACCAGCTACCACATCCCCTCCTCCAGCTGAAACTCCACCTTCCCTTCCAAATTTGTCTCCACCATCTCCACCAGCCGGTTCCCCTCCTCCTCAATCACCTCCCACAACAATTCCACCTCCCTCTCGACCGATTTCGCCATCTCCTCCTCCTCCGGCCAATTTTCCAAGGCCACCAACCACTAGAACTCCTCCAGAGAAAGAAAATCCACCAAAAACTACTCCTTCACATGCATCTCCTCCATCAGTTTCTGAAACTCCTCCTAAACCTCCTTCCTCTGATGTTCCCCCTCCATCCACATTGCCTTCAACTCCTCCTTCAGACCCTTCAGGATCTTCACCTCCAGCTTCTTTGCCTGATCCCCCAACTAATAAAACAGTGGTGGGGGGTCCGAAGGTGTCGCTACCCTCTCTTCCAACTGAGAAACCCACTGCTAGACCTACTAATGATGGTACTAACAGTATGTCTTCAAACAACACACCTTCACATTCTGGAGGGTTGAGCACTGGAGGATCTGTGGCTATTGGAATTGTAGTTGGTTTTATTGTCCTCAGCCTTCTTGTTATGGCTGTGTGGTTTGCACAGAAGAAAAAGAAGAAGGGAACAGGATCAAGAGGTAGTTATGCTGCTCCTTCTCCATTTACCTCATCCCACAATTCAGGTACCTTATTCTTGAGGCCGCAGTCTCCGGCCAACTTTTTAGGTAGTGGCTCTGGTAGTGATTTTGTATATTCTCCATCAGAGCCTGGTGGTGTAAGTAGTTCAAGATCATGGTTCACATATGAAGAACTTATTCAAGCTACAAATGGGTTTTCAGCACAAAATTTGTTGGGAGAAGGTGGATTTGGCTGTGTTTATAAAGGTTTGCTGATAGATGGAAGAGAAGTAGCTGTGAAACAGCTCAAAATTGGTGGTGGGCAAGGGGAACGCGAATTCAGGGCAGAAGTTGAGATTATTAGCCGTGTACATCATCGTCATCTGGTTTCTTTAGTTGGTTACTGTATATCCGAGCATCAGAGATTGCTTGTATATGACTATGTTCCCAACGATACTCTTCATTACCATCTCCACGGTGAAAATAGACCAGTTCTAGATTGGCCTACCAGAGTCAAGGTTGCTGCTGGTGCAGCTCGTGGAATAGCTTACTTGCATGAAGACTGTCATCCACGCATTATTCATCGAGATATTAAGTCATCAAACATCCTACTTGATCTCAACTATGAAGCTCAAGTTTCGGACTTTGGGCTTGCAAAATTGGCATTAGATTCAAATACACATGTAACTACACGTGTAATGGGAACCTTTGGGTACATGGCACCAGAATATGCGACAAGTGGAAAACTTACTGAAAAGTCTGATGTATATTCTTTTGGGGTTGTGCTTTTGGAGCTAATTACAGGTCGGAAGCCTGTAGATGCATCTCAACCAATTGGTGATGAGAGCCTGGTTGAATGGGCTCGACCTCTGTTGACGGAAGCACTTGACAATGAGGACTTTGAAATTTTGGTGGATCCAAGACTGGGGAAGAACTACGATAGAAATGAAATGTTTCGGATGATCGAGGCTGCCGCAGCCTGTGTACGCCACTCATCGGTGAAGAGACCACGCATGAGTCAGGTGGTGAGAGCTTTAGATTCCTTGGATGAGTTTACGGATCTCAATAACGGAATGAAACCGGGACAGAGTTCGGTGTTTGATTCGGCGCAGCAATCTGCACAAATCAGAATGTTTAGGAGGATGGCTTTTGGGAGCCAAGATAGTTCCGGTTTCTTCAATGAGTCTCAGAGTAGCTGGAGGAGTAGAGATCACGACCCAACAACTGTCTTCTCCCAAAATAAAACTGGGCATGGGAACGTTTGA

>Glyma.18g280200.2 sequence-type=CDS polypeptide=Glyma.18g280200.2.p locus=Glyma.18g280200 ID=Glyma.18g280200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCAGCAAACCCTTCCCCAAATGCTTCCCCTGTTGCAGTGCCTCCAGCACTTGGTGCTATTTTATCACCACCTCCTTCTTCATCTTCTCCAACAAACACTTCCACCCCACCATCACCTCCCAGTTCTTCTCAGCCTAATCAAACACAAACACAAACACAAACACCCAATTCCCCTGCTCCTTCATCTCCTTCTGACCCTTCTGCTCCACCTCCTTCTCCTCCTCAGGCAGTGCCATTAACCCCTCCTCCTTCCATATCACTGTCTCCTCCACCATCATCTACACCACCACCAACTTTGCCCCCTCCATCACCACCTGATTCTCCACCACCATTGCCACCTGCATCTCCAACCCCACCAGTTACAACATCTCCCCCCTCACCACCAGTTACAACATCTCCCCCCTCACCACCAGCTACCACATCCCCTCCTCCAGCTGAAACTCCACCTTCCCTTCCAAATTTGTCTCCACCATCTCCACCAGCCGGTTCCCCTCCTCCTCAATCACCTCCCACAACAATTCCACCTCCCTCTCGACCGATTTCGCCATCTCCTCCTCCTCCGGCCAATTTTCCAAGGCCACCAACCACTAGAACTCCTCCAGAGAAAGAAAATCCACCAAAAACTACTCCTTCACATGCATCTCCTCCATCAGTTTCTGAAACTCCTCCTAAACCTCCTTCCTCTGATGTTCCCCCTCCATCCACATTGCCTTCAACTCCTCCTTCAGACCCTTCAGGATCTTCACCTCCAGCTTCTTTGCCTGATCCCCCAACTAATAAAACAGTGGTGGGGGGTCCGAAGGTGTCGCTACCCTCTCTTCCAACTGAGAAACCCACTGCTAGACCTACTAATGATGGTACTAACAGTATGTCTTCAAACAACACACCTTCACATTCTGGAGGGTTGAGCACTGGAGGATCTGTGGCTATTGGAATTGTAGTTGGTTTTATTGTCCTCAGCCTTCTTGTTATGGCTGTGTGGTTTGCACAGAAGAAAAAGAAGAAGGGAACAGGATCAAGAGGTAGTTATGCTGCTCCTTCTCCATTTACCTCATCCCACAATTCAGGTACCTTATTCTTGAGGCCGCAGTCTCCGGCCAACTTTTTAGGTAGTGGCTCTGGTAGTGATTTTGTATATTCTCCATCAGAGCCTGGTGGTGTAAGTAGTTCAAGATCATGGTTCACATATGAAGAACTTATTCAAGCTACAAATGGGTTTTCAGCACAAAATTTGTTGGGAGAAGGTGGATTTGGCTGTGTTTATAAAGGTTTGCTGATAGATGGAAGAGAAGTAGCTGTGAAACAGCTCAAAATTGGTGGTGGGCAAGGGGAACGCGAATTCAGGGCAGAAGTTGAGATTATTAGCCGTGTACATCATCGTCATCTGGTTTCTTTAGTTGGTTACTGTATATCCGAGCATCAGAGATTGCTTGTATATGACTATGTTCCCAACGATACTCTTCATTACCATCTCCACGGTGAAAATAGACCAGTTCTAGATTGGCCTACCAGAGTCAAGGTTGCTGCTGGTGCAGCTCGTGGAATAGCTTACTTGCATGAAGACTGTCATCCACGCATTATTCATCGAGATATTAAGTCATCAAACATCCTACTTGATCTCAACTATGAAGCTCAAGTACATGGCACCAGAATATGCGACAAGTGGAAAACTTACTGA
Predicted protein sequences of Glyma.18g280200
>Glyma.18g280200.1.p sequence-type=predicted peptide transcript=Glyma.18g280200.1 locus=Glyma.18g280200 ID=Glyma.18g280200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASANPSPNASPVAVPPALGAILSPPPSSSSPTNTSTPPSPPSSSQPNQTQTQTQTPNSPAPSSPSDPSAPPPSPPQAVPLTPPPSISLSPPPSSTPPPTLPPPSPPDSPPPLPPASPTPPVTTSPPSPPVTTSPPSPPATTSPPPAETPPSLPNLSPPSPPAGSPPPQSPPTTIPPPSRPISPSPPPPANFPRPPTTRTPPEKENPPKTTPSHASPPSVSETPPKPPSSDVPPPSTLPSTPPSDPSGSSPPASLPDPPTNKTVVGGPKVSLPSLPTEKPTARPTNDGTNSMSSNNTPSHSGGLSTGGSVAIGIVVGFIVLSLLVMAVWFAQKKKKKGTGSRGSYAAPSPFTSSHNSGTLFLRPQSPANFLGSGSGSDFVYSPSEPGGVSSSRSWFTYEELIQATNGFSAQNLLGEGGFGCVYKGLLIDGREVAVKQLKIGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDYVPNDTLHYHLHGENRPVLDWPTRVKVAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDLNYEAQVSDFGLAKLALDSNTHVTTRVMGTFGYMAPEYATSGKLTEKSDVYSFGVVLLELITGRKPVDASQPIGDESLVEWARPLLTEALDNEDFEILVDPRLGKNYDRNEMFRMIEAAAACVRHSSVKRPRMSQVVRALDSLDEFTDLNNGMKPGQSSVFDSAQQSAQIRMFRRMAFGSQDSSGFFNESQSSWRSRDHDPTTVFSQNKTGHGNV*

>Glyma.18g280200.2.p sequence-type=predicted peptide transcript=Glyma.18g280200.2 locus=Glyma.18g280200 ID=Glyma.18g280200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASANPSPNASPVAVPPALGAILSPPPSSSSPTNTSTPPSPPSSSQPNQTQTQTQTPNSPAPSSPSDPSAPPPSPPQAVPLTPPPSISLSPPPSSTPPPTLPPPSPPDSPPPLPPASPTPPVTTSPPSPPVTTSPPSPPATTSPPPAETPPSLPNLSPPSPPAGSPPPQSPPTTIPPPSRPISPSPPPPANFPRPPTTRTPPEKENPPKTTPSHASPPSVSETPPKPPSSDVPPPSTLPSTPPSDPSGSSPPASLPDPPTNKTVVGGPKVSLPSLPTEKPTARPTNDGTNSMSSNNTPSHSGGLSTGGSVAIGIVVGFIVLSLLVMAVWFAQKKKKKGTGSRGSYAAPSPFTSSHNSGTLFLRPQSPANFLGSGSGSDFVYSPSEPGGVSSSRSWFTYEELIQATNGFSAQNLLGEGGFGCVYKGLLIDGREVAVKQLKIGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDYVPNDTLHYHLHGENRPVLDWPTRVKVAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDLNYEAQVHGTRICDKWKTY*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo