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Report for Sequence Feature Glyma.18g290800

Feature Type:gene_model
Chromosome:Gm18
Start:56972637
stop:56976362
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g290800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G12110.1AT actin-11 JGI N/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005856GO-cc cytoskeleton EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
KOG0676 KOG Actin and related proteins JGI N/AIEA
PTHR11937Panther ACTIN JGI N/AIEA
PTHR11937:SF77Panther JGI N/AIEA
PF00022PFAM Actin JGI N/AIEA

Proteins Associated with Glyma.18g290800
LocusGene SymbolProtein Name
SAC6 Actin 6 gene
ACTIN actin-6

Expression Patterns of Glyma.18g290800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g290800
ParalogEvidenceComments
Glyma.02g091900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g290800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g52780 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.18g290800
>Glyma.18g290800.1 sequence-type=CDS polypeptide=Glyma.18g290800.1.p locus=Glyma.18g290800 ID=Glyma.18g290800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAGACGCTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTTAAGGCTGGTTTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTAGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAAGATGCATATGTTGGTGATGAGGCACAGTCTAAGAGGGGTATTTTGACTCTCAAGTACCCCATTGAACACGGAATTGTGAGCAATTGGGATGATATGGAAAAGATTTGGCATCATACCTTCTATAATGAGCTTCGTGTTGCCCCAGAAGAGCATCCAGTTCTCTTAACTGAGGCCCCTCTTAACCCTAAGGCTAATCGTGAGAAGATGACCCAAATCATGTTTGAGACCTTTAACACCCCTGCTATGTATGTAGCCATCCAGGCTGTTCTTTCACTTTATGCAAGTGGTCGTACAACTGGTATTGTGTTGGATTCTGGTGATGGTGTCAGCCACACTGTCCCTATCTATGAGGGTTATGCCCTCCCACATGCCATCCTTCGTCTTGATCTGGCTGGTCGTGACCTCACAGATTTCTTGATGAAAATCTTGACTGAGCGTGGTTATTCCTTCACCACCTCAGCCGAGCGGGAAATTGTAAGGGATGTGAAAGAAAAGCTTTCTTACATTGCCCTTGACTACGAGCAAGAACTGGAGACAGCCAGGACCAGCTCGTCTGTGGAGAAGAGCTATGAGTTGCCTGATGGGCAGGTCATCACCATTGGCGATGAGCGTTTCAGATGTCCAGAGGTTCTGTTCCAACCATCCATGATTGGAATGGAAGCTTCAGGCATTCACGAGACAACATACAACTCCATAATGAAGTGCGATGTTGATATCAGGAAGGACCTCTATGGTAACATTGTTCTTTCAGGAGGAACAACCATGTTCCCTGGTATTGCTGACAGAATGAGCAAGGAAATTTCGGCATTGGCACCCAGCAGCATGAAGATCAAGGTTGTAGCACCACCGGAGAGAAAATACAGTGTCTGGATCGGTGGTTCTATCTTGGCATCTCTTAGCACCTTCCAGCAGATGTGGATTGCAAAGGCAGAATATGACGAGTCTGGTCCATCAATTGTGCACAGAAAGTGCTTCTAA
Predicted protein sequences of Glyma.18g290800
>Glyma.18g290800.1.p sequence-type=predicted peptide transcript=Glyma.18g290800.1 locus=Glyma.18g290800 ID=Glyma.18g290800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDFLMKILTERGYSFTTSAEREIVRDVKEKLSYIALDYEQELETARTSSSVEKSYELPDGQVITIGDERFRCPEVLFQPSMIGMEASGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF*






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