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Report for Sequence Feature Glyma.19G120200

Feature Type:gene_model
Chromosome:Gm19
Start:37773951
stop:37778723
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19G120200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G33110.1AT MATE efflux family protein JGI N/AIEA
GO:0006855GO-bp drug transmembrane transport EnsemblGenomesN/AIEA
GO:0006855GO-bp drug transmembrane transport JGI N/AIEA
GO:0055085GO-bp transmembrane transport EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0015238GO-mf drug transmembrane transporter activity EnsemblGenomesN/AIEA
GO:0015238GO-mf drug transmembrane transporter activity JGI N/AIEA
GO:0015297GO-mf antiporter activity EnsemblGenomesN/AIEA
GO:0015297GO-mf antiporter activity JGI N/AIEA
KOG1347 KOG Uncharacterized membrane protein, predicted efflux pump JGI N/AIEA
PTHR11206Panther MULTIDRUG RESISTANCE PROTEIN JGI N/AIEA
PTHR11206:SF9Panther JGI N/AIEA
PF01554PFAM MatE JGI N/AIEA

Expression Patterns of Glyma.19G120200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.19G120200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g120200 Wm82.a4.v1ISS As supplied by JGI
Glyma19g29860 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19G120200
>Glyma.19g120200.1 sequence-type=CDS polypeptide=Glyma.19g120200.1.p locus=Glyma.19g120200 ID=Glyma.19g120200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAATGGAAGAGGAGCTAAAGGAGACGCTTATGCATCATCCAAACAACACTTCTTTGGAGAGTGTTGAAAAGGAAGAGTCATTGAGGAAAAGGGCATGGGAAGAAAGCAAGAAGATGTGGGTGGTAGCAGGCCCCGCCATATTCACAAGGTTTTCAACGTTTGGAATCATGGTGGTTAGTCAATCCTTCATTGGGCATATTGGCTCAACTGAACTAGCTGCCTATGCCATTGTTATGACTGTCCTAGTCAGGTTTGCAAATGGTGTATTGATTGGAATGGCAAGTGCATTGGATACTCTTTGTGGGCAAGCATATGGGGCCAAAAAATATGACATGCTAGGAGTGTATCTTCAAAGATCATGGATAGTGTTGTTCATGACCTCAATACTCCTTCTTCCTATTTACATCTTTACCACTCCTTTGTTAGAGGCTCTAGGCCAAGATAAAACCATTGCTCAAGTTGCTGGAAGCATTTCTCTGTGGTCAATAGGTATAATATTTGCTTTCTCTGTCTCATTCACCAGCCAAATGTTCCTACAATCACAGAGCAAGAACAAGATCATTGCCTACCTTGCAGCAGTTTCAATTTCAATTCATGTTTTGTTGTCATGGGTTTTAACTGTTCAGTTCAAGTTTGGGCTCAACGGTGCAATGACATCAACACTTTTAGCATATTGGATTCCTAACATTGGCCAGCTTGTGTTTATAATGACTAAGTGCCCTGACACATGGAAAGGTTTCTCATTCTTGGCCTTCAAAGATCTTTTGCCTGTTATCAAGCTTTCCCTCTCTTCTGGAGCTATGTTATGTCTTGAGATCTGGTACAACACTGTTTTGATTCTTCTTACAGGCAACATGAAAAATGCTGAAGTGTCTATTGATGCTCTGGCCATATGCCTCAACATTAGTGGGTGGGAAATGATGATAGCCCTTGGTTTCTTTGCTGCAGCAAGCGTCCGAGTGGCAAATGAGCTTGGAAGAGGGAATTCAAAGGCTACAAAATTTTCCATTCTGATAACAGTCCTCACATCATTTTCCATTGGATTCGTGTTATTCTTGGTGTTCCTATTTCTGAGGGGAAAACTTGCTTACATTTTCACTCCAGACCCTGAGGTTGCTAAAGCTGTTGGCGATTTATCACCATTGCTCTCATTTTCCTTCTTGTTGAACAGTGTCCAACCTGTGCTTTCTGGAGTTTCTGTGGGTGCTGGGTGGCAAAGCGTTGTAGCATATGTAAACATAGGCTGCTATTATCTTATTGGTATTCCTGTTGGAGTGCTGCTTGATAATCTTTTCCATTTGGAAGTTAAGGGTATTTGGATTGGAATGTTGTTTGGAACATTTGTTCAAACCGTAATGCTTATTACAATCACATTTAAAACTGATTGGGACAAGCAGGTAGAGATAGCTCGAAATCGTGTTAACAAATGGGCAGTGACGACGGAGAACGAAGAATCAAACAGTAGATCAAGCATATCTAGCTAG
Predicted protein sequences of Glyma.19G120200
>Glyma.19g120200.1.p sequence-type=predicted peptide transcript=Glyma.19g120200.1 locus=Glyma.19g120200 ID=Glyma.19g120200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEMEEELKETLMHHPNNTSLESVEKEESLRKRAWEESKKMWVVAGPAIFTRFSTFGIMVVSQSFIGHIGSTELAAYAIVMTVLVRFANGVLIGMASALDTLCGQAYGAKKYDMLGVYLQRSWIVLFMTSILLLPIYIFTTPLLEALGQDKTIAQVAGSISLWSIGIIFAFSVSFTSQMFLQSQSKNKIIAYLAAVSISIHVLLSWVLTVQFKFGLNGAMTSTLLAYWIPNIGQLVFIMTKCPDTWKGFSFLAFKDLLPVIKLSLSSGAMLCLEIWYNTVLILLTGNMKNAEVSIDALAICLNISGWEMMIALGFFAAASVRVANELGRGNSKATKFSILITVLTSFSIGFVLFLVFLFLRGKLAYIFTPDPEVAKAVGDLSPLLSFSFLLNSVQPVLSGVSVGAGWQSVVAYVNIGCYYLIGIPVGVLLDNLFHLEVKGIWIGMLFGTFVQTVMLITITFKTDWDKQVEIARNRVNKWAVTTENEESNSRSSISS*






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