SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.19g131500

Feature Type:gene_model
Chromosome:Gm19
Start:39199359
stop:39203599
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g131500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G14800.1AT pyrroline-5- carboxylate (P5C) reductase JGI N/AIEA
GO:0006098GO-bp pentose-phosphate shunt JGI N/AIEA
GO:0006561GO-bp proline biosynthetic process EnsemblGenomesN/AIEA
GO:0008652GO-bp cellular amino acid biosynthetic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0055129GO-bp L-proline biosynthetic process EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0004616GO-mf phosphogluconate dehydrogenase (decarboxylating) activity JGI N/AIEA
GO:0004735GO-mf pyrroline-5-carboxylate reductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
KOG3124 KOG Pyrroline-5-carboxylate reductase JGI N/AIEA
PTHR11645Panther PYRROLINE-5-CARBOXYLATE REDUCTASE JGI N/AIEA
PF03807PFAM NADP oxidoreductase coenzyme F420-dependent JGI N/AIEA
ARG-PRO-PWYSoyCyc9 L-arginine degradation VI (arginase 2 pathway) Plant Metabolic Network ISS
PROSYN-PWYSoyCyc9 L-proline biosynthesis I Plant Metabolic Network ISS
PWY-3341SoyCyc9 L-proline biosynthesis III Plant Metabolic Network ISS
GN7V-47126SoyCyc9-rxn pyrroline-5-carboxylate reductase Plant Metabolic Network ISS

Proteins Associated with Glyma.19g131500
LocusGene SymbolProtein Name
P5CR pyrroline-5-carboxylate reductase

Expression Patterns of Glyma.19g131500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g131500
ParalogEvidenceComments
Glyma.03g129100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g131500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g31230 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g131500
>Glyma.19g131500.1 sequence-type=CDS polypeptide=Glyma.19g131500.1.p locus=Glyma.19g131500 ID=Glyma.19g131500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAATCTTTCCGATTCCCGCCGAATCCTACACTCTCGGCTTCATCGGCGCCGGAAAAATGGCCGAGTCCATTGCCCGAGGCGCCGTCCGCTCCGGCGTCCTGCCGCCTTCTCGCATTCGGACCGCCGTCCACTTCAACCTCGCCCGCCGTGGCGCCTTCGAGTCCTTCGGCGTCACCGTTCTCCCTTCAAACGACGACGTCGTTCGCGAAAGCGACGTCGTCGTTTTGTCGGTCAAACCTCAATTAGTGAAAGACGTGGTGTCGAAATTGACGCCGCTTTTGACGAAGAACAAGCTTTTGGTTTCGGTCGCTGCTGGTACCAAATTGAAAGATCTTCAGGAATGGGCTGGGAACGACAGATTTATAAGAGTGATGCCTAATACCCCAGCAGCTGTTGGCCAGGCAGCATCTGTAATGAGCTTGGGGGGATCTGCAACGGAAGAAGATGGAAATATTATAGCCCAATTATTTGGGTCAATTGGCAAAATATGGAAAGCTGAGGAAAAGTATTTTGATGCAATAACTGGCCTGAGTGGCAGTGGTCCTGCTTATGTTTATTTAGCAATAGAGGCTTTGGCTGATGGAGGAGTAGCAGCTGGTTTACCACGTGATCTTTCATTAAGTCTAGCTTCTCAAACTGTATTAGGGGCAGCATCAATGGTCTCCCAGACTGGGAAGCACCCGGGACAGCTCAAAGATGACGTTACTTCTCCAGGTGGGACAACAATTACGGGCATTCATGAGTTAGAAAATGGTGGGTTCCGTGGAACACTGATGAATGCTGTTGTTGCTGCTGCTAAGCGCAGCCGAGAGCTTTCCTGA
Predicted protein sequences of Glyma.19g131500
>Glyma.19g131500.1.p sequence-type=predicted peptide transcript=Glyma.19g131500.1 locus=Glyma.19g131500 ID=Glyma.19g131500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEIFPIPAESYTLGFIGAGKMAESIARGAVRSGVLPPSRIRTAVHFNLARRGAFESFGVTVLPSNDDVVRESDVVVLSVKPQLVKDVVSKLTPLLTKNKLLVSVAAGTKLKDLQEWAGNDRFIRVMPNTPAAVGQAASVMSLGGSATEEDGNIIAQLFGSIGKIWKAEEKYFDAITGLSGSGPAYVYLAIEALADGGVAAGLPRDLSLSLASQTVLGAASMVSQTGKHPGQLKDDVTSPGGTTITGIHELENGGFRGTLMNAVVAAAKRSRELS*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo