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Report for Sequence Feature Glyma.20g146200

Feature Type:gene_model
Chromosome:Gm20
Start:38469427
stop:38471651
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.20g146200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G22640.1AT cupin family protein JGI N/AIEA
GO:0005773GO-cc vacuole EnsemblGenomesN/AIEA
GO:0033095GO-cc aleurone grain EnsemblGenomesN/AIEA
GO:0045735GO-mf nutrient reservoir activity EnsemblGenomesN/AIEA
GO:0045735GO-mf nutrient reservoir activity JGI N/AIEA
PF00190PFAM Cupin JGI N/AIEA

Proteins Associated with Glyma.20g146200
LocusGene SymbolProtein Name
Cgy4 beta-conglycinin beta-subunit 4
CG-BETA-1 beta-conglycinin beta-subunit

Expression Patterns of Glyma.20g146200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.20g146200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma20g28460 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.20g146200
>Glyma.20g146200.1 sequence-type=CDS polypeptide=Glyma.20g146200.1.p locus=Glyma.20g146200 ID=Glyma.20g146200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGAGAGTGCGGTTTCCTTTGTTGGTGTTGCTGGGAACTGTTTTCCTGGCATCAGTTTGTGTCTCATTAAAGGTGAGAGAGGATGAGAATAACCCTTTCTACTTGAGAAGCTCTAACAGCTTCCAAACTCTCTTTGAGAACCAAAACGGTCGCATTCGTCTCCTCCAGAGATTCAACAAACGCTCCCCACAACTTGAGAACCTTCGAGACTACCGGATTGTCCAGTTTCAGTCAAAACCCAACACAATCCTTCTCCCCCACCATGCTGACGCCGATTTCCTCCTCTTTGTCCTTAGCGGGAGAGCCATACTTACCTTGGTGAACAACGACGACAGAGACTCCTACAACCTTCACCCTGGCGATGCCCAGAGAATCCCAGCTGGAACCACTTACTATTTGGTTAACCCTCACGACCACCAGAATCTCAAAATAATCAAACTTGCCATACCCGTCAACAAACCTGGCAGATATGATGATTTCTTCTTATCTAGCACTCAAGCCCAACAGTCCTACTTGCAAGGCTTCAGCCATAATATTCTAGAGACCTCCTTCCATAGCGAATTCGAGGAGATAAACAGGGTTTTGTTTGGAGAGGAAGAGGAGCAGAGGCAGCAAGAGGGAGTGATCGTGGAACTCTCAAAGGAACAAATTCGGCAACTGAGCAGACGTGCCAAATCTAGTTCAAGGAAAACCATTTCCTCCGAAGATGAACCATTCAACTTGAGAAGCCGCAACCCCATCTATTCCAACAACTTTGGAAAGTTCTTTGAGATCACCCCTGAGAAAAACCCACAGCTTCGGGACTTGGATATCTTCCTCAGTTCTGTGGATATCAACGAAGGAGCTCTTCTTCTACCACACTTCAATTCAAAGGCCATAGTGATACTAGTGATTAATGAAGGAGATGCAAACATTGAACTTGTTGGCATTAAAGAACAACAACAGAAGCAGAAACAGGAAGAGGAACCTTTGGAAGTGCAAAGGTACAGAGCTGAATTGTCTGAAGACGATGTATTTGTAATTCCAGCAGCTTATCCATTTGTCGTCAACGCTACCTCAAACCTCAATTTCCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTGCGTTCCCTGGGTCTGCACAAGATGTTGAGAGGCTATTAAAGAAGCAGAGGGAATCCTACTTTGTTGATGCTCAGCCTCAGCAGAAGGAGGAGGGGAGTAAGGGAAGAAAGGGTCCTTTTCCTTCAATCTTAGGTGCTCTCTACTGA
Predicted protein sequences of Glyma.20g146200
>Glyma.20g146200.1.p sequence-type=predicted peptide transcript=Glyma.20g146200.1 locus=Glyma.20g146200 ID=Glyma.20g146200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMRVRFPLLVLLGTVFLASVCVSLKVREDENNPFYLRSSNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKIIKLAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLFGEEEEQRQQEGVIVELSKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVGIKEQQQKQKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNATSNLNFLAFGINAENNQRNFLAGEKDNVVRQIERQVQELAFPGSAQDVERLLKKQRESYFVDAQPQQKEEGSKGRKGPFPSILGALY*






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