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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G36280 | AT | Annotation by Michelle Graham. TAIR10: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein | chr4:17165513-17169277 REVERSE LENGTH=626 | SoyBase | E_val: 5.00E-25 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| PTHR23336 | Panther | ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. | JGI | ISS | |
| PTHR23336:SF8 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF02518 | PFAM | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | JGI | ISS | |
| PF07496 | PFAM | CW-type Zinc Finger | JGI | ISS | |
| UniRef100_G7K2L3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: MORC family CW-type zinc finger protein n=1 Tax=Medicago truncatula RepID=G7K2L3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023372C7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023372C7 related cluster n=1 Tax=unknown RepID=UPI00023372C7 | SoyBase | E_val: 0 | ISS |
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Glyma01g36091 not represented in the dataset |
Glyma01g36091 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g156800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g36091.1 sequence type=CDS gene model=Glyma01g36091 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAATCAACAACACTTTGTTCTTTTTGCAGGTTGCTATTATAAACTTTCAGAAGTACAAGTTTTTCATTCTACCCCCTTCTATAGCTTCAGAATCTAGCCCGGTCAATGTTGCATATGAGATAGATAATACATGTTCAGTAGATACTCATCCAAGGGATTATGAATCAGCTAAAGATCTTAAGTTTCCTCCTCGAGCTGAAGACCATGTCAATCTTTTTACAGCTGAAACTTGCAATGAATTTCAATCTCGACTCCCTGTGAAAAATTTCATACGGGTAGACCCAAGTTACCTGAAAACTCTTGGTCAGGTTCATTCTGGATGGATTTTTGGTGGAATAGCTGAGCTTGTTGATAATTCCAGAGATGCCAAAGCAACTAAGATGGACATTTTTGTAGATCTGATCAACTTAAAGAAATCTGGGAAGGATGTCCCTATGCTGTCAGTTATTGATGATGGTAATGGGATGAACCATGCAGAGGTTATGAAAATGGTATCTTTTGGGCACAAACAATCTGATAAAGATGACAAGGATCACATTGGCAAGTTTGGTGTTGGATTCAAAACTGGAGCAATGAGGCTTGGGAGGGATGTCCTGGTTCTAACACAGACAACTAATTCCAGATCACTAGCTTTTCTTTCACAATCATTGAATGAAGGCAAAGATAATATTGAAATTCCCATAGTTAGTTATTGTCGACATGGACAACGTATGGAAGTTGACTTAAGTATGCAGTCTGAAGCTTTGGCTAAATACAATTTGAAAGCTATTAAGGAATTTTCACCCTTTAATAAGTATCTTATTGGTGAAAAGGCAGCCTTGTTTGGCGGCGGTACAGGAACACAGATATACATATGGAACTTGGATGAATGGGGATCAAAGTATTGTTTAGAATGGCATGATGGATTGAAAGGTGGGAGTTCTTTTCACCAAGGTGACATTTTAATCAGCAGCAAAAGGATTCGTTCTCGTCCAGGCCAGATTAGTCAAAAGGTTCCATTGGATTACTCATTACGAGCTTATTTAGAAGTTATTTTCTTAGTTCCTCGAATGAAGATAAGTGTACAAGGGACACTGGTAAAAAGTCGACCACTAGGGAATTTCCTGACTCAAATTGTTATAGAAACTGATAACATCTTGGGAAGGCCTGTTGAATTAATTCTCGGATTTAGTCAATTAGAGTGGGAGCAAGCAAACTGTGGAATGTTTTTGTATTGGCATGGCCGCTTAATTGAGGCTTACAAGAGAGTTGGTGGCATGATTCATAATGCAGATGTTGGCCGTGGTGTAATTGGTGTTGTAAATGTGACCAATTTAATGGATGAGCAGGATGGAAGGGTGTGGGTACATAATAACAAGCAGGGATTCCAAGACTCTCAACCATATGCATGTCTTGAGCAGTGGCTGGGTAGAAAAGCAGATAAATACTGGGACGATAATTTTGATTCTCTTACGTTGGACAAACAAAATTGTGTCTTCAAACCTGACCATGAGTGGGTGCAATGTGACAAGTGCAGAAAGTGGAGAATATTACCTTCTGATTTTGATAGCAGAAAATTACCTGTGCAATGGTTTTGTTATATGGATCCTTTCAAAGGTCAATGTGCAGATGCTGAACAGAAGATGGAACCTGGCATAGTTAATGTTTCCACGAAGCGGTCAGGTTATGATTGCTTGCTGAAGGATTCTGATAATGAAAAGATGGAGGTTGTTACAACCTCTGCTACAGGTTCAGGTTAG
>Glyma01g36091.1 sequence type=predicted peptide gene model=Glyma01g36091 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKINNTLFFLQVAIINFQKYKFFILPPSIASESSPVNVAYEIDNTCSVDTHPRDYESAKDLKFPPRAEDHVNLFTAETCNEFQSRLPVKNFIRVDPSYLKTLGQVHSGWIFGGIAELVDNSRDAKATKMDIFVDLINLKKSGKDVPMLSVIDDGNGMNHAEVMKMVSFGHKQSDKDDKDHIGKFGVGFKTGAMRLGRDVLVLTQTTNSRSLAFLSQSLNEGKDNIEIPIVSYCRHGQRMEVDLSMQSEALAKYNLKAIKEFSPFNKYLIGEKAALFGGGTGTQIYIWNLDEWGSKYCLEWHDGLKGGSSFHQGDILISSKRIRSRPGQISQKVPLDYSLRAYLEVIFLVPRMKISVQGTLVKSRPLGNFLTQIVIETDNILGRPVELILGFSQLEWEQANCGMFLYWHGRLIEAYKRVGGMIHNADVGRGVIGVVNVTNLMDEQDGRVWVHNNKQGFQDSQPYACLEQWLGRKADKYWDDNFDSLTLDKQNCVFKPDHEWVQCDKCRKWRILPSDFDSRKLPVQWFCYMDPFKGQCADAEQKMEPGIVNVSTKRSGYDCLLKDSDNEKMEVVTTSATGSG*
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