Report for Sequence Feature Glyma02g16960
Feature Type: gene_model
Chromosome: Gm02
Start: 15304031
stop: 15306594
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g16960
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G48010 AT
Annotation by Michelle Graham. TAIR10: receptor-like kinase in in flowers 3 | chr2:19641465-19643318 FORWARD LENGTH=617
SoyBase E_val: 0 ISS
GO:0006468 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein phosphorylation
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0004672 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein kinase activity
SoyBase N/A ISS
GO:0004674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity
SoyBase N/A ISS
GO:0004702 GO-mf
Annotation by Michelle Graham. GO Molecular Function: receptor signaling protein serine/threonine kinase activity
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0016301 GO-mf
Annotation by Michelle Graham. GO Molecular Function: kinase activity
SoyBase N/A ISS
GO:0016772 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups
SoyBase N/A ISS
KOG1187
KOG
Serine/threonine protein kinase
JGI ISS
PTHR24420 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24420:SF895 Panther
JGI ISS
PF00069 PFAM
Protein kinase domain
JGI ISS
UniRef100_B9SFK9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Kinase, putative n=1 Tax=Ricinus communis RepID=B9SFK9_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1JFE0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JFE0_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma02g16960
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma02g16960
Paralog Evidence Comments
Glyma10g02840 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g16960 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g150600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g16960
Coding sequences of Glyma02g16960
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g16960.1 sequence type=CDS gene model=Glyma02g16960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATTTCCCTCTTCCACCTCTTTCTCTTCCTATCTCTCCCTCTCTCTTGTCTATGTGACACGTGTCCCCTGAACTTCACCATCCTGGGCAGCACGAAACCCAGCTCCTTCGACACCTCGCGGTGCCAGGTGATCAGCCAATCCCTCCGCCTCGTCCTATCCGACTACCTCCGCCGCAGCGGCTTCTTCCTCCCTCCCCTCAACGCCTCCGACACATGCTGGACCCACTTCCAGTCCTACGTTAACAACTTCGACCCAACCTACAATATCACCTCCTCCTGCGGTTTCCAAACCTCGTGGATCTCCCAAGGCTGCAACAACGTCACCACCAAACAAGACTTCGAGTCCCTGGTCCCTCAACCATCCCTCCAGAACATCCGTAACAACTGCAACCAATCGCTCGAGAACAACTCCCCCTGCGCCCTCTGCACCTCTTCGTTTTCCCCTCTCCCGCCACTGGGAGACTCCGTCGGAAACCTCACCCACTGCACCGACTACGCTTTTATCTACGCCGCCGCTTTCGCCAACCGCTTCGGCCCCTCCGACCCCGGCACCGCCAAGTGCTTGTTCTCCCTTCAGTTCTCCTCTAACAACAACAATTCCTCCTCCAAGAGAAAAAAGGTTATTATTGCTGTTGTTTCTGTTGTCTGTGTCTTGGTCGTGTTACTGCTGGCTCTCTGGGTTTGGGTTTATTGCAAGCTGGAAGACAAGGTTTTGGCCGGGGATAAGGATGTTCGTGTCTCGGAAATCAGTTTGGTTTCTGGATTGGATTCCATGGAGCAGAGCACAACCTTGATCAGGTTCACTTTTGATGATATTAAGAAAGCAACCAAGAATTTCTCGAGGGATAACATAGTTGGGAGAGGTGGCTACGGGAATGTGTACAAAGGCTTGCTTCCTGATGGGAGCGAGGTTGCGTTTAAGAGGTTCAAGAATTGTTCTGCTTCCGGTGATGCAAGCTTCACTCACGAAGTTGAGGTTATTGCAAGTGTCAGACATGTCAACCTTGTTGCTTTGAGAGGCTATTGTTCTGTTACTACTCGTTTGGAAGGTTACCAGAGGATCATTGTTTGTGATATGGTGAAAAACGGGAGCCTCCACGACCATTTGTTTGGTTCTAATGGTATGAAATTGAGTTGGCCAATTCGTCAGAAGATTGCTCTAGGCACTGCTAGAGGGTTGGCTTATTTGCATTATGGGGCTCAACCTGCAATCATTCATAGAGATATTAAAGCAAGTAATATACTTCTTGATGATAAGTTTGAAGCTAAAGTTGCAGATTTTGGACTAGCCAAGTTCAACCCTGAGGGGATGACACATATGAGCACTAGGGTTGCTGGAACAATGGGGTATGTTGCTCCTGAATATGCTTTGTATGGGCAATTGACAGAGAGAAGCGATGTGTTCAGTTTTGGGGTTGTGCTTCTTGAGCTTTTGAGTGGGAGGAAGGCTCTTCAGATGAACAATGATGGTCAACCTTCTGCTTTGACTGATTGGGCTTGGTCATTGGTTAGAACGGGTAAAGCTTTGAGTGTTATTGAAGATGGCATGCCACAACCGGGTTCAGAACAAGTTCTTGAGAAGTATGTGTTAATTGCTGTGCTTTGTTCTCATCCACAGTTGTATGCTAGGCCTACAATGGATCAGGTTGTTAAAATGATGGAGACTGATGAATCAGTGCCTTCAATACCTGAAAGGCCAATTCCTCTTGTTGCTGGGAGGCTTGATATTGAGAGATCTGTGAGTAGTAGTGGCTCTGGTCAGCTCTCTAGTCCAACGGGTTATCAATCATATACTATAGAAAGTGATCGTCAATCTTCTAATTCTAGGGATGAAAGAAGCTCAAGCTCTAGCTCTAGGATTTTGAGTACAGATTGA
Predicted protein sequences of Glyma02g16960
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g16960.1 sequence type=predicted peptide gene model=Glyma02g16960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MISLFHLFLFLSLPLSCLCDTCPLNFTILGSTKPSSFDTSRCQVISQSLRLVLSDYLRRSGFFLPPLNASDTCWTHFQSYVNNFDPTYNITSSCGFQTSWISQGCNNVTTKQDFESLVPQPSLQNIRNNCNQSLENNSPCALCTSSFSPLPPLGDSVGNLTHCTDYAFIYAAAFANRFGPSDPGTAKCLFSLQFSSNNNNSSSKRKKVIIAVVSVVCVLVVLLLALWVWVYCKLEDKVLAGDKDVRVSEISLVSGLDSMEQSTTLIRFTFDDIKKATKNFSRDNIVGRGGYGNVYKGLLPDGSEVAFKRFKNCSASGDASFTHEVEVIASVRHVNLVALRGYCSVTTRLEGYQRIIVCDMVKNGSLHDHLFGSNGMKLSWPIRQKIALGTARGLAYLHYGAQPAIIHRDIKASNILLDDKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGRKALQMNNDGQPSALTDWAWSLVRTGKALSVIEDGMPQPGSEQVLEKYVLIAVLCSHPQLYARPTMDQVVKMMETDESVPSIPERPIPLVAGRLDIERSVSSSGSGQLSSPTGYQSYTIESDRQSSNSRDERSSSSSSRILSTD*
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