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SoyBase
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G28780 | AT | Annotation by Michelle Graham. TAIR10: PIF1 helicase | chr5:10812907-10814173 REVERSE LENGTH=337 | SoyBase | E_val: 1.00E-49 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG0987 | KOG | DNA helicase PIF1/RRM3 | JGI | ISS | |
| PTHR10492 | Panther | HELICASE-RELATED | JGI | ISS | |
| PF05970 | PFAM | PIF1 helicase | JGI | ISS | |
| UniRef100_G7JLV8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Helicase-like protein n=1 Tax=Medicago truncatula RepID=G7JLV8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002337699 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337699 related cluster n=1 Tax=unknown RepID=UPI0002337699 | SoyBase | E_val: 0 | ISS |
|
Glyma02g29564 not represented in the dataset |
Glyma02g29564 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g175300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g29564.1 sequence type=CDS gene model=Glyma02g29564 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATAACCATGAGCATGCAAATCATCGTGATACAGCACAAGCCAGGATAAAGAATAAAGGTATCAGGCAGCACAAAGTTAATGACGAGGCTCAGAATATTGATTCTAATGACCCCGCAATTAATAGAGAAGGATATTCTGATCTTGGTGACCAACTCATGCAGTGTAGTCACTGTAATGCAAATATGTGGTATGATGAAAGAGTCTCAAAAGATAAAAGAACTACAAATTCAAGATTCAGTTTATGTTGTGGAAATGGCAAAGTTGAACTTCCATTGTTACAGAATCCACCTAAATATCTCTACCAACTTTTGTATGATCATGGTACATCTGATAGTAAAAATTACCAACAGAACATAAGGACATATAACATGATGTTTGCCTTTACTTCTGCTGGTATTAAGTTTGACAAATCGATTAATCATTATAGAGGACCTCCTACAATAAGAATTCAAGGTCAACCATGTCATAGAATAGGTAGTATGTTACCAATGCCTGTGAAAGAACCAAAATTTGCACAATTGTATATCTTTGACACAGAAAATGAAGTGCAGAATAGGATTAATGCAATAAGTCCACATAATCAAATTCAAGAACACATTGTTTCACAACTCAGTGAGATGCTGGATGAATACAACGTGCATGCAAAAACTTTCAGGATGGCGAGAGATAGATTGCAAGATGTTCAAGTGGATAATATCAAGTTGAAATTGATTGCTAATCGTGAGAAAGATGGTCGTACATATAATGTACCTATTGTTCCTGAAGTTGCAGCACTAATAGTAGGAAATTTTGATGCAAATTCAAAAAGAGATATTATTATTGAAACTCAGCATGGACAACTACAAAGGATCCATGAATTACATTCTAGCTATCTAGCTCTACAATACCCTATCTTATTTCCTTACGGGGAAGATGGATATAGACCTGATATTCTACATAGCAGTCGATCAGATGGTAAGAAAAGGAAAAGAAATCGTTTTACAATGAGAGAGTGGTTTTCTTATAGGCTACAATGTAGATCAAATGAGTCTAAAACTTTGTTGAATTCTAGGAGACTATTCCAACGATTTGTTGTTGACGGTCCGCACTATATGGATCAACTTTATTTTGATGGTATGATCATATGTATCCATGTGGGCTTCCCAAATATGTTTATTACTTTAACCTGCAATCCAAACTGGCCTGAAATCCATAGATTGCTGAATCCGTTGAATCTGAAAGCAGCAGATAGGCCAGACATAATCTCCAAAGTCTTCAAACTAAAGTATGAGCAAATGCTTATGAACCTGACAAAGAATCACATGCTAGGCAAAGTTATTGCATATGAAATTGATCAAATTATATCAGCAGAGATACCTTCACAGCAAGATGATCCAGAACTGTATTCATTAGTAAAAAACCATATGGTTCATGGTCCATGTGGAAGTCTGAATCCTGGATCTCCATGCATGAAAGAAGGCAAGTGTAGTCGTTTCTATCCTAAAATGTTCCAGCCGCATACTGTTTTAGATGCTGATGGTTTTCCAGTCTATCGTAGAAGAAATAATGGTAATGCAATTGAGAAAAATGGTGTTATAATTGATAACATGTATATTGTACCTTACAATCCTAGATTGCTTAGAAAATACCAAGCGCATATCAATATTGAATGGTGTAACGAAAACACTTCTATCAAATATTTATTTAAGTACATCAACAAGGGATATGATAGAGTGACTGCTGTTTTGATTGATGAAGATAACGGTCAAACTGAGAATGGTGGCACTCATAATGATGAGATCAAAGAATATCTAGATTGCAGATACATATGTCCCTGTGAATCTACTTGGAGAATCTTTGGATTTCCAATACATGGAAAAAAACCTGCTGTTGAAAGATTACACTTCCATCTTCTAGGCCAACATAGTGTTCTCTACGAAGACCATGATGATATTCATGATGTATTGTCTAAGCCAAGTATCTTTGATTCAAAGTTTATTTCATGGATGAACACCAACCAAAATTCTGTTGAAGGGAGAAATCTTACTTATGCAGAATTTGTTTCTAAGTTTGTATACAATCAGAAGAAAAGATGTTGGCACCTTAGGAAGAAAGGCTATACCATTGGCAGATTACTATGGGTTCCACCAATTACAGGGGAATTATTTTATTTGAGAATGATGCTTACTGTTTGTAAAGGACCTACCTCATTTGAAGATTTGAGAACAGTTGATAATGTTCAGTATTCTACATATAAAGAAGCATGTTTTGCTATGGGATTTTTACAAGATGATAAAGAATTTATTGAGGCTATCAAGGAAGCAAAAGACTGGGGTTTAACACATTATATAAGAAAGCTATTTGTGTTGTTACTTTTAACTGCAACAATGAGCAAACCTAAACAAGTTTGGGACCAAACTTGGCATTGGATGGCTGATGACATTGTCTATAATTATAAAAAATTATCAACAAGTCCAGCATTACAGCTTGATGATAGAACTCTTCAAAATCTGGTCTTGCTTGAAATTGAAGAACTGCTGCAAGTAAATCAAAGATCGTTTAGAGACTATCCTTCAATGCCATATCCAGAGGATGCGAATTGTCCAGCTTATCTAGACAATAGCCTTATATTAGCTGAACTGAACTACAACAATGAAGAACTTAGATCAAAGTTTGAACATCTATTTTCTCACATGACAGATGATCAAGCTTCAATTTACAACCAGATTGTTGAAGCTATTAATAAAGATGAAGGTGGTATGTTTTTTCTCTATGGATATGGAGGTACAGGAAAAACATACATTTGGAAAATACTTGCAAGTTCACTGAGAGCTGACAATAAAATTGTAATAATGGTAGCCTCTAGCGGCATAGCTTCTCTGCTATTGCCTGGAGGTAGAACTGCACATTCAAAATTTAAAATTCCAGTTCCAGTTTTTGAAGACTCAACTTGCAATATCCATCAAGGAACTCAATTAGCCAAACTATTAAATCAGACAAGTCTAATCATTTGGGATGAAGCACCCATGGCTCACAAATTCTGCTTTGAGGCACTTGATCACAGTCTTAGAGATATCATCAAACACAACTCAAAGGACAATAAAATCTTTGGAGGTAAAGTCATGGTCTTTGGTGGAGATTTCCGGCAGATCCTGCCAGTCATTCCAAGAGGCAGTCGCTCTGATATTGTTAACGCAACAATTAATTCCTCTTATCTATGGGATCATTGTCAGATCTTAAGACTGACAAAAAACATGCGTTTACAAAACAACATGCAAGCAACAGATCAAGAAGAAACTGCAGCTTTTGCACAGTGGATTATAGATATTGGTGATGGTATTATTGGAGATGAAAATGATGGCTATGCTACTATTGAAATTTCACAGGAACTATTAATCACAGAATATAATGATCTTATTCATAGTGAACAAATTGAATATCTAAGCTCTGATTCAGTTGACAAATCCGAAACCATTGAAAGTTGTCATTTCCGCTCGCTGACAACTGAATTTCTGAATTCATTGACAACATCTGGCTTACCCAATCACTGTCTCAAACTCAAGATTGGAACACCAATAATGCTATTAAGGAACTTAGACCAAACTCAAGGGTTGTGTAACGGTACTAGGTTAATTATCACAAGACTAGCAAAACATGTTATTGCAGCTGACATAATTTCTGGGACAAATATCGGAGATTATGTTTATATCCCACGAATGTCTATGTCGCCTTCACAGTCACCATGGCCTTTTAAGCTATTGAGGAGACAATTTCCAATAATGATTTCTTATGCCATGATAATTAATAAATCCCAAGGACAATCACTATCTTCAGTTGGACTTTACTTGCCAAAACCAGTTTTTTCACATGGCCAACTATATGTTGCATTATCAAGAGACAAGTCAAAGAAAGGACTTCGAATTTTAATACATGATCAGGACAAAAAGAAAATTACTTCAACCACGAATGTGGTTTTCAAAGAGGTCTTTACAAATATTAGAAGCAATAAAAATACCTCTTCACCTGCCTCCACCACCACAGTCTTTCATACTTATCATTCTGCCAATTCACGTCCAATCTTTGAACGGAACATTCAATGCTCCATAGTTCCCAAACCACTTAACTTGCCGTCACTTACACCCCCCCGAAAAGCAATGACCCTTCCATCACCCACTACTTTACATCATCAGACCACGGTTCATTTCTCTACCACCTTCATTTCAACTCTAACCAAATTATTCTCTCGAAGCGACTACCACCATGTCTCCCGCTTCATCGACTGCCTCAAGCAA
>Glyma02g29564.1 sequence type=predicted peptide gene model=Glyma02g29564 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDNHEHANHRDTAQARIKNKGIRQHKVNDEAQNIDSNDPAINREGYSDLGDQLMQCSHCNANMWYDERVSKDKRTTNSRFSLCCGNGKVELPLLQNPPKYLYQLLYDHGTSDSKNYQQNIRTYNMMFAFTSAGIKFDKSINHYRGPPTIRIQGQPCHRIGSMLPMPVKEPKFAQLYIFDTENEVQNRINAISPHNQIQEHIVSQLSEMLDEYNVHAKTFRMARDRLQDVQVDNIKLKLIANREKDGRTYNVPIVPEVAALIVGNFDANSKRDIIIETQHGQLQRIHELHSSYLALQYPILFPYGEDGYRPDILHSSRSDGKKRKRNRFTMREWFSYRLQCRSNESKTLLNSRRLFQRFVVDGPHYMDQLYFDGMIICIHVGFPNMFITLTCNPNWPEIHRLLNPLNLKAADRPDIISKVFKLKYEQMLMNLTKNHMLGKVIAYEIDQIISAEIPSQQDDPELYSLVKNHMVHGPCGSLNPGSPCMKEGKCSRFYPKMFQPHTVLDADGFPVYRRRNNGNAIEKNGVIIDNMYIVPYNPRLLRKYQAHINIEWCNENTSIKYLFKYINKGYDRVTAVLIDEDNGQTENGGTHNDEIKEYLDCRYICPCESTWRIFGFPIHGKKPAVERLHFHLLGQHSVLYEDHDDIHDVLSKPSIFDSKFISWMNTNQNSVEGRNLTYAEFVSKFVYNQKKRCWHLRKKGYTIGRLLWVPPITGELFYLRMMLTVCKGPTSFEDLRTVDNVQYSTYKEACFAMGFLQDDKEFIEAIKEAKDWGLTHYIRKLFVLLLLTATMSKPKQVWDQTWHWMADDIVYNYKKLSTSPALQLDDRTLQNLVLLEIEELLQVNQRSFRDYPSMPYPEDANCPAYLDNSLILAELNYNNEELRSKFEHLFSHMTDDQASIYNQIVEAINKDEGGMFFLYGYGGTGKTYIWKILASSLRADNKIVIMVASSGIASLLLPGGRTAHSKFKIPVPVFEDSTCNIHQGTQLAKLLNQTSLIIWDEAPMAHKFCFEALDHSLRDIIKHNSKDNKIFGGKVMVFGGDFRQILPVIPRGSRSDIVNATINSSYLWDHCQILRLTKNMRLQNNMQATDQEETAAFAQWIIDIGDGIIGDENDGYATIEISQELLITEYNDLIHSEQIEYLSSDSVDKSETIESCHFRSLTTEFLNSLTTSGLPNHCLKLKIGTPIMLLRNLDQTQGLCNGTRLIITRLAKHVIAADIISGTNIGDYVYIPRMSMSPSQSPWPFKLLRRQFPIMISYAMIINKSQGQSLSSVGLYLPKPVFSHGQLYVALSRDKSKKGLRILIHDQDKKKITSTTNVVFKEVFTNIRSNKNTSSPASTTTVFHTYHSANSRPIFERNIQCSIVPKPLNLPSLTPPRKAMTLPSPTTLHHQTTVHFSTTFISTLTKLFSRSDYHHVSRFIDCLKQ
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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